© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS100_1|g1798.t1 |
| Gene name | |
| Location | scaffold_007:57291..58673 |
| Strand | + |
| Gene length (bp) | 1382 |
| Transcript length (bp) | 1257 |
| Coding sequence length (bp) | 1257 |
| Protein length (aa) | 419 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF16893 | fn3_2 | Fibronectin type III domain | 1.1E-37 | 75 | 162 |
| PF16892 | CHS5_N | Chitin biosynthesis protein CHS5 N-terminus | 2.2E-24 | 3 | 49 |
| PF12738 | PTCB-BRCT | twin BRCT domain | 1.2E-11 | 174 | 233 |
| PF00533 | BRCT | BRCA1 C Terminus (BRCT) domain | 5.6E-08 | 164 | 237 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0046983 | protein dimerization activity | Yes |
| GO:0005515 | protein binding | No |
| GO:0005488 | binding | No |
| GO:0003674 | molecular_function | No |
| Orthofinder run ID | 3 |
| Orthogroup | 2097 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g1798.t1 MLVSLTVGKVDAGVAVLLTQDNRLIEFPSVLLPSNITSGSIVDITVARNHTAESASAANFQSLQKRILNTYGIKT PTPPVLRLRNATQTSLVLEWEPIDLATASLKSLSLYRNGSKAGSIPRPLETRSTKISGLAIHTEYTFHLVLRTTA GTYQSEKLTCRTHKMTDLSGITVTAGVLPPQQKDALAAALDRIGGKLIDSVRIDTTHFVCTEGRGPLWEKAVEMN IPVVVPEWVDACEAEGTIVSVRGYYLNADPKARQLGPIHSSTQHQRTVSTATSNLAPPAAQAQTPSRQAAQEDEQ NVEPPVTPFPGAEMTGQPIAEEKEVGSDESTESPPPPPPKDEEKEDETAEQNGDHETPPSPPEKDEDEGEGKDEE EKTEENTREQEEEEEEEEKGDSSNTKERKSKEGGEGDFNEVPL* |
| Coding | >Ani_SJS100_1|g1798.t1 ATGTTGGTCTCCTTGACAGTCGGCAAGGTAGACGCAGGAGTCGCTGTACTCTTGACCCAGGACAACAGACTGATC GAATTTCCCTCCGTCCTTCTCCCCAGCAACATCACGTCCGGTAGTATCGTCGACATCACCGTCGCGCGCAACCAC ACAGCCGAATCCGCCAGTGCCGCCAACTTCCAGTCGCTCCAAAAACGCATCCTCAATACCTACGGCATCAAGACC CCCACACCCCCGGTTCTCCGTCTCCGCAACGCAACTCAAACTTCCCTCGTCTTGGAATGGGAACCTATTGACCTA GCCACCGCATCCCTGAAATCACTCTCCCTGTACCGCAATGGCTCTAAAGCCGGATCCATTCCCCGTCCGCTTGAG ACGCGAAGCACCAAAATTAGCGGTCTAGCCATCCACACCGAATACACCTTCCATCTCGTCCTGCGCACCACCGCC GGCACCTACCAGTCGGAGAAGCTGACTTGCCGCACGCACAAGATGACGGATCTCTCCGGTATCACGGTGACGGCG GGTGTCCTTCCCCCGCAACAGAAGGATGCTCTTGCAGCTGCGTTGGATCGCATCGGTGGAAAGCTGATCGACTCG GTCCGCATTGATACCACCCACTTTGTCTGTACGGAGGGGAGAGGCCCGCTCTGGGAGAAGGCGGTTGAGATGAAT ATTCCCGTGGTCGTTCCGGAGTGGGTGGATGCTTGCGAGGCCGAAGGCACTATTGTCAGTGTTCGCGGGTATTAC CTGAATGCTGACCCCAAGGCAAGACAGCTGGGCCCGATTCACAGCTCTACGCAGCATCAGCGAACGGTTTCTACT GCCACCTCGAACCTGGCGCCCCCGGCTGCGCAGGCTCAGACCCCATCACGGCAGGCGGCGCAGGAAGACGAGCAG AACGTTGAGCCTCCGGTTACGCCGTTCCCGGGAGCCGAGATGACCGGCCAGCCCATCGCGGAAGAGAAGGAGGTG GGATCGGACGAGAGTACAGAGTCGCCGCCACCTCCACCTCCGAAGGATGAAGAAAAGGAGGATGAAACTGCCGAG CAGAATGGTGATCACGAGACACCGCCATCTCCGCCGGAGAAGGACGAGGACGAGGGCGAAGGCAAGGACGAGGAA GAGAAGACCGAAGAGAACACGCGAGAGCAAGAAGAGGAAGAGGAAGAGGAAGAGAAAGGCGACTCATCAAATACC AAAGAGCGCAAATCAAAGGAGGGTGGAGAAGGGGACTTTAATGAAGTCCCTCTGTAA |
| Transcript | >Ani_SJS100_1|g1798.t1 ATGTTGGTCTCCTTGACAGTCGGCAAGGTAGACGCAGGAGTCGCTGTACTCTTGACCCAGGACAACAGACTGATC GAATTTCCCTCCGTCCTTCTCCCCAGCAACATCACGTCCGGTAGTATCGTCGACATCACCGTCGCGCGCAACCAC ACAGCCGAATCCGCCAGTGCCGCCAACTTCCAGTCGCTCCAAAAACGCATCCTCAATACCTACGGCATCAAGACC CCCACACCCCCGGTTCTCCGTCTCCGCAACGCAACTCAAACTTCCCTCGTCTTGGAATGGGAACCTATTGACCTA GCCACCGCATCCCTGAAATCACTCTCCCTGTACCGCAATGGCTCTAAAGCCGGATCCATTCCCCGTCCGCTTGAG ACGCGAAGCACCAAAATTAGCGGTCTAGCCATCCACACCGAATACACCTTCCATCTCGTCCTGCGCACCACCGCC GGCACCTACCAGTCGGAGAAGCTGACTTGCCGCACGCACAAGATGACGGATCTCTCCGGTATCACGGTGACGGCG GGTGTCCTTCCCCCGCAACAGAAGGATGCTCTTGCAGCTGCGTTGGATCGCATCGGTGGAAAGCTGATCGACTCG GTCCGCATTGATACCACCCACTTTGTCTGTACGGAGGGGAGAGGCCCGCTCTGGGAGAAGGCGGTTGAGATGAAT ATTCCCGTGGTCGTTCCGGAGTGGGTGGATGCTTGCGAGGCCGAAGGCACTATTGTCAGTGTTCGCGGGTATTAC CTGAATGCTGACCCCAAGGCAAGACAGCTGGGCCCGATTCACAGCTCTACGCAGCATCAGCGAACGGTTTCTACT GCCACCTCGAACCTGGCGCCCCCGGCTGCGCAGGCTCAGACCCCATCACGGCAGGCGGCGCAGGAAGACGAGCAG AACGTTGAGCCTCCGGTTACGCCGTTCCCGGGAGCCGAGATGACCGGCCAGCCCATCGCGGAAGAGAAGGAGGTG GGATCGGACGAGAGTACAGAGTCGCCGCCACCTCCACCTCCGAAGGATGAAGAAAAGGAGGATGAAACTGCCGAG CAGAATGGTGATCACGAGACACCGCCATCTCCGCCGGAGAAGGACGAGGACGAGGGCGAAGGCAAGGACGAGGAA GAGAAGACCGAAGAGAACACGCGAGAGCAAGAAGAGGAAGAGGAAGAGGAAGAGAAAGGCGACTCATCAAATACC AAAGAGCGCAAATCAAAGGAGGGTGGAGAAGGGGACTTTAATGAAGTCCCTCTGTAA |
| Gene | >Ani_SJS100_1|g1798.t1 ATGTTGGTCTCCTTGACAGTCGGCAAGGTAGACGCAGGAGTCGCTGTACTCTTGACCCAGGACAACAGACTGGTG AGTTCAATTTCCATCCCCACACACTTACAGCAAGCGATTGACGCACGAGCCTGCACGATATTGCCTCAAAATAAT CCACTCTTCTTTCAGAGTAGCCCTGATACTCAACTAACCCGCCCCAGATCGAATTTCCCTCCGTCCTTCTCCCCA GCAACATCACGTCCGGTAGTATCGTCGACATCACCGTCGCGCGCAACCACACAGCCGAATCCGCCAGTGCCGCCA ACTTCCAGTCGCTCCAAAAACGCATCCTCAATACCTACGGCATCAAGACCCCCACACCCCCGGTTCTCCGTCTCC GCAACGCAACTCAAACTTCCCTCGTCTTGGAATGGGAACCTATTGACCTAGCCACCGCATCCCTGAAATCACTCT CCCTGTACCGCAATGGCTCTAAAGCCGGATCCATTCCCCGTCCGCTTGAGACGCGAAGCACCAAAATTAGCGGTC TAGCCATCCACACCGAATACACCTTCCATCTCGTCCTGCGCACCACCGCCGGCACCTACCAGTCGGAGAAGCTGA CTTGCCGCACGCACAAGATGACGGATCTCTCCGGTATCACGGTGACGGCGGGTGTCCTTCCCCCGCAACAGAAGG ATGCTCTTGCAGCTGCGTTGGATCGCATCGGTGGAAAGCTGATCGACTCGGTCCGCATTGATACCACCCACTTTG TCTGTACGGAGGGGAGAGGCCCGCTCTGGGAGAAGGCGGTTGAGATGAATATTCCCGTGGTCGTTCCGGAGTGGG TGGATGCTTGCGAGGCCGAAGGCACTATTGTCAGTGTTCGCGGGTATTACCTGAATGCTGACCCCAAGGCAAGAC AGCTGGGCCCGATTCACAGCTCTACGCAGCATCAGCGAACGGTTTCTACTGCCACCTCGAACCTGGCGCCCCCGG CTGCGCAGGCTCAGACCCCATCACGGCAGGCGGCGCAGGAAGACGAGCAGAACGTTGAGCCTCCGGTTACGCCGT TCCCGGGAGCCGAGATGACCGGCCAGCCCATCGCGGAAGAGAAGGAGGTGGGATCGGACGAGAGTACAGAGTCGC CGCCACCTCCACCTCCGAAGGATGAAGAAAAGGAGGATGAAACTGCCGAGCAGAATGGTGATCACGAGACACCGC CATCTCCGCCGGAGAAGGACGAGGACGAGGGCGAAGGCAAGGACGAGGAAGAGAAGACCGAAGAGAACACGCGAG AGCAAGAAGAGGAAGAGGAAGAGGAAGAGAAAGGCGACTCATCAAATACCAAAGAGCGCAAATCAAAGGAGGGTG GAGAAGGGGACTTTAATGAAGTCCCTCTGTAA |