© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS100_1|g178.t1 |
| Gene name | |
| Location | scaffold_001:597018..598028 |
| Strand | - |
| Gene length (bp) | 1010 |
| Transcript length (bp) | 783 |
| Coding sequence length (bp) | 783 |
| Protein length (aa) | 261 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04479 | RTA1 | RTA1 like protein | 3.5E-61 | 49 | 256 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0005575 | cellular_component | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0031224 | intrinsic component of membrane | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 19 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 13 | 35 | 22 |
| 2 | 42 | 64 | 22 |
| 3 | 79 | 101 | 22 |
| 4 | 121 | 143 | 22 |
| 5 | 158 | 177 | 19 |
| 6 | 197 | 216 | 19 |
| 7 | 231 | 253 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g178.t1 MAVQVEYLGIYDFVPSEAAAIVFAILFLITTILHYYQAFRWRVWFFIPFLIGCAFEVIGYIARAKSSTQYPDYDI GPELIQYILILVAPALLAASIYMEFGRLMIMVEGEQYSIIRRAWLTKIFVLGDVISFFAQFISAAMLAKTTTASK GQTIMKLGVLVQIVFFGLFLVTIIIFHKRLTKYKSRAYGLVPWRKHLLALYATGLLIFVRSIFRFAEFVESSDGP LTRYEWVSYVFDAVMMLATCAVLNWVHPAEIKKNY* |
| Coding | >Ani_SJS100_1|g178.t1 ATGGCAGTTCAGGTGGAGTACCTGGGCATATATGATTTTGTGCCCTCTGAAGCGGCCGCCATTGTATTTGCGATT CTCTTTCTTATCACCACAATTTTACATTATTACCAGGCCTTCCGCTGGCGGGTGTGGTTCTTCATCCCTTTCCTT ATCGGATGTGCCTTCGAGGTCATTGGATACATAGCGCGCGCAAAATCTTCAACCCAGTATCCAGACTATGACATC GGCCCGGAGCTCATTCAGTACATCCTAATTTTAGTTGCCCCGGCGCTACTAGCAGCAAGCATCTACATGGAATTT GGCCGGCTTATGATCATGGTCGAAGGGGAACAATACTCCATCATTCGGCGCGCTTGGCTCACCAAGATCTTCGTC CTAGGCGATGTCATATCCTTCTTTGCACAATTCATCAGCGCCGCAATGCTCGCCAAAACCACGACAGCCAGTAAA GGCCAAACGATCATGAAACTCGGTGTCCTTGTGCAAATCGTCTTCTTCGGGCTCTTTCTCGTCACGATAATTATC TTCCATAAGCGTCTCACGAAATATAAATCCCGGGCATACGGGCTCGTGCCGTGGCGGAAGCATCTGCTGGCGTTA TACGCGACAGGCCTATTGATCTTCGTGCGGTCGATCTTCCGGTTCGCGGAGTTTGTAGAGAGCTCTGATGGTCCT CTGACGCGGTATGAGTGGGTGTCGTATGTGTTCGATGCCGTGATGATGTTGGCGACGTGCGCGGTACTAAATTGG GTGCATCCAGCGGAGATCAAGAAAAATTATTGA |
| Transcript | >Ani_SJS100_1|g178.t1 ATGGCAGTTCAGGTGGAGTACCTGGGCATATATGATTTTGTGCCCTCTGAAGCGGCCGCCATTGTATTTGCGATT CTCTTTCTTATCACCACAATTTTACATTATTACCAGGCCTTCCGCTGGCGGGTGTGGTTCTTCATCCCTTTCCTT ATCGGATGTGCCTTCGAGGTCATTGGATACATAGCGCGCGCAAAATCTTCAACCCAGTATCCAGACTATGACATC GGCCCGGAGCTCATTCAGTACATCCTAATTTTAGTTGCCCCGGCGCTACTAGCAGCAAGCATCTACATGGAATTT GGCCGGCTTATGATCATGGTCGAAGGGGAACAATACTCCATCATTCGGCGCGCTTGGCTCACCAAGATCTTCGTC CTAGGCGATGTCATATCCTTCTTTGCACAATTCATCAGCGCCGCAATGCTCGCCAAAACCACGACAGCCAGTAAA GGCCAAACGATCATGAAACTCGGTGTCCTTGTGCAAATCGTCTTCTTCGGGCTCTTTCTCGTCACGATAATTATC TTCCATAAGCGTCTCACGAAATATAAATCCCGGGCATACGGGCTCGTGCCGTGGCGGAAGCATCTGCTGGCGTTA TACGCGACAGGCCTATTGATCTTCGTGCGGTCGATCTTCCGGTTCGCGGAGTTTGTAGAGAGCTCTGATGGTCCT CTGACGCGGTATGAGTGGGTGTCGTATGTGTTCGATGCCGTGATGATGTTGGCGACGTGCGCGGTACTAAATTGG GTGCATCCAGCGGAGATCAAGAAAAATTATTGA |
| Gene | >Ani_SJS100_1|g178.t1 ATGGCAGTTCAGGTGGAGTACCTGGGCATATATGATTTTGTGCCCTCTGAAGCGGCCGCCATTGTATTTGCGATT CTCTTTCTTATCACCACAATTTTACATTATTACCAGGCCTTCCGCTGGCGGGTGTGGTTCTTCATCCCTTTCCTT ATCGGATGTGCCTGTAAGTTGCTTGTTCACGGGCCACATCCTCTTTCTCTCAGCAAGCTAACCACCAATCTGTCC CTTATAGTCGAGGTCATTGGATACATAGCGGTCAGTCAACCTAGTCTCCAAGTTCCAAATGTTAGATCTTAACTC AGGTCTCAGCGCGCAAAATCTTCAACCCAGTATCCAGACTATGACATCGGCCCGGAGCTCATTCAGTACATCCTA ATTTTAGTTGCCCCGGCGCTACTAGCAGCAAGCATCTACATGGAATTTGGCCGGCTTATGATCATGGTCGAAGGG GAACAATACTCCATCATTCGGCGCGCTTGGCTCACCAAGATCTTCGTCCTAGGCGATGTCATATCCTTCTTTGCA CAATTCATCAGTAAGTCTTCAATCCTGTCAGGACGTTTTGATCCCAACTTCAACTACTAGAGGTAGCTGTGCGTT ACACAGCAGTCAACTGACCGCATGATAACACCATTATAGGCGCCGCAATGCTCGCCAAAACCACGACAGCCAGTA AAGGCCAAACGATCATGAAACTCGGTGTCCTTGTGCAAATCGTCTTCTTCGGGCTCTTTCTCGTCACGATAATTA TCTTCCATAAGCGTCTCACGAAATATAAATCCCGGGCATACGGGCTCGTGCCGTGGCGGAAGCATCTGCTGGCGT TATACGCGACAGGCCTATTGATCTTCGTGCGGTCGATCTTCCGGTTCGCGGAGTTTGTAGAGAGCTCTGATGGTC CTCTGACGCGGTATGAGTGGGTGTCGTATGTGTTCGATGCCGTGATGATGTTGGCGACGTGCGCGGTACTAAATT GGGTGCATCCAGCGGAGATCAAGAAAAATTATTGA |