© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS100_1|g1643.t1 |
| Gene name | |
| Location | scaffold_006:206176..206890 |
| Strand | + |
| Gene length (bp) | 714 |
| Transcript length (bp) | 564 |
| Coding sequence length (bp) | 564 |
| Protein length (aa) | 188 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00080 | Sod_Cu | Copper/zinc superoxide dismutase (SODC) | 4.4E-11 | 52 | 182 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0046872 | metal ion binding | Yes |
| GO:0006801 | superoxide metabolic process | Yes |
| GO:0008150 | biological_process | No |
| GO:0043169 | cation binding | No |
| GO:0008152 | metabolic process | No |
| GO:0072593 | reactive oxygen species metabolic process | No |
| GO:0005488 | binding | No |
| GO:0009987 | cellular process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0043167 | ion binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 23 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g1643.t1 MLFKSTFLATATALCLSATATAQGASTNAPVVTDNDDVLYYAQLQPKDNTTVRGSVTIFPKPDSVGVLVSAQFWG IPDNDQQLVYHIHQKPVPQDGNCYSTGAHLDPYGRGDATPCDINAPQTCQVGDLSGKHGPIWAPDNEVFSTTYTD WFLSNVEGEPAFFGNLSLVVHAADNSRLACGNFVQLK* |
| Coding | >Ani_SJS100_1|g1643.t1 ATGCTTTTCAAATCCACCTTCCTCGCAACTGCCACGGCTCTGTGCCTCTCCGCCACGGCTACAGCTCAGGGCGCC AGCACCAATGCCCCCGTCGTCACAGACAATGATGATGTCCTCTACTACGCCCAGCTCCAGCCCAAGGATAACACC ACAGTCCGCGGGTCTGTAACCATCTTCCCTAAGCCCGATAGTGTGGGTGTCCTTGTTTCGGCGCAGTTCTGGGGC ATCCCCGACAATGACCAGCAGTTGGTCTACCACATCCACCAAAAGCCAGTCCCTCAGGACGGAAACTGCTACAGC ACCGGTGCACACCTGGACCCTTACGGCCGGGGCGATGCCACCCCCTGCGACATCAACGCGCCACAGACCTGTCAA GTTGGCGACCTCAGTGGCAAGCATGGACCGATCTGGGCGCCCGACAACGAGGTATTCTCCACCACGTATACGGAC TGGTTCCTTTCCAATGTGGAGGGGGAGCCTGCCTTCTTTGGAAACCTCTCGTTGGTCGTGCATGCAGCGGATAAC TCGCGCCTGGCGTGTGGAAACTTCGTGCAGCTGAAGTAA |
| Transcript | >Ani_SJS100_1|g1643.t1 ATGCTTTTCAAATCCACCTTCCTCGCAACTGCCACGGCTCTGTGCCTCTCCGCCACGGCTACAGCTCAGGGCGCC AGCACCAATGCCCCCGTCGTCACAGACAATGATGATGTCCTCTACTACGCCCAGCTCCAGCCCAAGGATAACACC ACAGTCCGCGGGTCTGTAACCATCTTCCCTAAGCCCGATAGTGTGGGTGTCCTTGTTTCGGCGCAGTTCTGGGGC ATCCCCGACAATGACCAGCAGTTGGTCTACCACATCCACCAAAAGCCAGTCCCTCAGGACGGAAACTGCTACAGC ACCGGTGCACACCTGGACCCTTACGGCCGGGGCGATGCCACCCCCTGCGACATCAACGCGCCACAGACCTGTCAA GTTGGCGACCTCAGTGGCAAGCATGGACCGATCTGGGCGCCCGACAACGAGGTATTCTCCACCACGTATACGGAC TGGTTCCTTTCCAATGTGGAGGGGGAGCCTGCCTTCTTTGGAAACCTCTCGTTGGTCGTGCATGCAGCGGATAAC TCGCGCCTGGCGTGTGGAAACTTCGTGCAGCTGAAGTAA |
| Gene | >Ani_SJS100_1|g1643.t1 ATGCTTTTCAAATCCACCTTCCTCGCAACTGCCACGGCTCTGTGCCTCTCCGCCACGGCTACAGCTCAGGGCGCC AGCACCAATGCCCCCGTCGTCACAGACAATGATGATGTCCTCTACTACGCCCAGCTCCAGCCCAAGGATAACACC ACAGTCCGCGGGTCTGTAACCATCTTCCCTAAGCCCGATAGTGTGGGTGTCCTTGTTTCGGCGCAGTTCTGGGGC ATCCCCGACAATGACCAGCAGTTGGGTACGCCTCCCTTTCCTCCCGCTCCTTCAATATCTATCCCATCATATGGG CTTGTGTTTAGAGTTTCCCTACGAATCCGAACCCAAACTCAAACTTTGAGTTAATAACAAACCTACACCTCAATA CTAACCTCTTTATGAAATTGATCAGTCTACCACATCCACCAAAAGCCAGTCCCTCAGGACGGAAACTGCTACAGC ACCGGTGCACACCTGGACCCTTACGGCCGGGGCGATGCCACCCCCTGCGACATCAACGCGCCACAGACCTGTCAA GTTGGCGACCTCAGTGGCAAGCATGGACCGATCTGGGCGCCCGACAACGAGGTATTCTCCACCACGTATACGGAC TGGTTCCTTTCCAATGTGGAGGGGGAGCCTGCCTTCTTTGGAAACCTCTCGTTGGTCGTGCATGCAGCGGATAAC TCGCGCCTGGCGTGTGGAAACTTCGTGCAGCTGAAGTAA |