© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ani_SJS100_1|g1598.t1 |
| Gene name | |
| Location | scaffold_006:62844..63668 |
| Strand | + |
| Gene length (bp) | 824 |
| Transcript length (bp) | 717 |
| Coding sequence length (bp) | 717 |
| Protein length (aa) | 239 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01652 | IF4E | Eukaryotic initiation factor 4E | 2.2E-30 | 46 | 204 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006413 | translational initiation | Yes |
| GO:0003723 | RNA binding | Yes |
| GO:0003743 | translation initiation factor activity | Yes |
| GO:0008150 | biological_process | No |
| GO:0045182 | translation regulator activity | No |
| GO:0090079 | translation regulator activity, nucleic acid binding | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0008152 | metabolic process | No |
| GO:0005488 | binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0009987 | cellular process | No |
| GO:0008135 | translation factor activity, RNA binding | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 39 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g1598.t1 MSTIPSVHINDKSPIEEHHQHDSTSTSPTTRKSLHQNIFGKLRPLPFQYHWTVWYDRHTDAPAASSATATADYDS RLYVLHEDVADIATFYRVYNNYPWDKIRLRDTVHIFRKGVRPVWEDPENRNGGCWRFRVPKSKAQAFFHEIAILC MANEFQAVLEKEHDHVLGVSTSVRFNSHLISVWNKLGSNDRSIKALEKTIIDRLSPELRPTGTGSTAYFYKRHDE NDGFKEAVERSKT* |
| Coding | >Ani_SJS100_1|g1598.t1 ATGAGCACCATCCCAAGCGTCCACATCAACGACAAAAGCCCCATAGAGGAGCACCACCAACACGACTCCACCTCC ACCTCCCCAACAACCCGCAAATCCCTGCATCAGAACATCTTCGGCAAGCTACGACCCCTCCCCTTCCAATACCAC TGGACTGTCTGGTACGACCGTCACACCGACGCCCCAGCAGCATCAAGCGCAACCGCAACAGCAGACTACGACTCC CGTCTATACGTCCTGCACGAGGATGTCGCCGATATCGCCACCTTCTACCGCGTGTACAACAACTACCCCTGGGAC AAGATCCGCCTGCGCGACACCGTCCATATCTTTCGCAAAGGCGTGAGACCCGTCTGGGAAGACCCCGAGAATCGG AATGGGGGGTGCTGGCGCTTCCGTGTTCCGAAGAGTAAAGCCCAAGCTTTCTTTCATGAGATTGCTATTCTGTGT ATGGCGAACGAGTTTCAGGCTGTTTTGGAGAAGGAACACGACCACGTCCTCGGAGTCTCAACCTCCGTCCGCTTC AACTCGCACCTCATCTCCGTCTGGAACAAGCTCGGCTCCAACGACCGGTCTATCAAGGCTCTCGAGAAAACCATT ATTGATCGATTATCCCCTGAACTACGGCCCACGGGGACGGGGTCCACTGCCTACTTTTACAAGCGACATGATGAG AATGATGGGTTTAAGGAGGCTGTGGAGAGGAGTAAGACATGA |
| Transcript | >Ani_SJS100_1|g1598.t1 ATGAGCACCATCCCAAGCGTCCACATCAACGACAAAAGCCCCATAGAGGAGCACCACCAACACGACTCCACCTCC ACCTCCCCAACAACCCGCAAATCCCTGCATCAGAACATCTTCGGCAAGCTACGACCCCTCCCCTTCCAATACCAC TGGACTGTCTGGTACGACCGTCACACCGACGCCCCAGCAGCATCAAGCGCAACCGCAACAGCAGACTACGACTCC CGTCTATACGTCCTGCACGAGGATGTCGCCGATATCGCCACCTTCTACCGCGTGTACAACAACTACCCCTGGGAC AAGATCCGCCTGCGCGACACCGTCCATATCTTTCGCAAAGGCGTGAGACCCGTCTGGGAAGACCCCGAGAATCGG AATGGGGGGTGCTGGCGCTTCCGTGTTCCGAAGAGTAAAGCCCAAGCTTTCTTTCATGAGATTGCTATTCTGTGT ATGGCGAACGAGTTTCAGGCTGTTTTGGAGAAGGAACACGACCACGTCCTCGGAGTCTCAACCTCCGTCCGCTTC AACTCGCACCTCATCTCCGTCTGGAACAAGCTCGGCTCCAACGACCGGTCTATCAAGGCTCTCGAGAAAACCATT ATTGATCGATTATCCCCTGAACTACGGCCCACGGGGACGGGGTCCACTGCCTACTTTTACAAGCGACATGATGAG AATGATGGGTTTAAGGAGGCTGTGGAGAGGAGTAAGACATGA |
| Gene | >Ani_SJS100_1|g1598.t1 ATGAGCACCATCCCAAGCGTCCACATCAACGACAAAAGCCCCATAGAGGAGCACCACCAACACGACTCCACCTCC ACCTCCCCAACAACCCGCAAATCCCTGCATCAGAACATCTTCGGCAAGCTACGACCCCTCCCCTTCCAATACCAC TGGACTGTCTGGTACGACCGTCACACCGACGCCCCAGCAGCATCAAGCGCAACCGCAACAGCAGACTACGACTCC CGTCTATACGTCCTGCACGAGGATGTCGCCGATATCGCCACCTTCTACCGCGTGTACAACAACTACCCCTGGGAC AAGATCCGCCTGCGCGACACCGTCCATATCTTTCGCAAAGGCGTGAGACCCGTCTGGGAAGACCCCGAGAATCGG AATGGGGGGTGCTGGCGCTTCCGTGTTCCGAAGAGTAAAGCCCAAGCTTTCTTTCATGAGATTGCTATTCTGTGT ATGGCGAACGAGTTTCAGGCTGTTTTGGAGAAGGGTTAGTCATCTTTTCCTTCTTTCATCTGTTCTGTTTTTCTA TGGTCTAGTAGATACACAACGGGTAAGTTTGGGACATACACTAACAAGACAATGGGGGAAATATAGAACACGACC ACGTCCTCGGAGTCTCAACCTCCGTCCGCTTCAACTCGCACCTCATCTCCGTCTGGAACAAGCTCGGCTCCAACG ACCGGTCTATCAAGGCTCTCGAGAAAACCATTATTGATCGATTATCCCCTGAACTACGGCCCACGGGGACGGGGT CCACTGCCTACTTTTACAAGCGACATGATGAGAATGATGGGTTTAAGGAGGCTGTGGAGAGGAGTAAGACATGA |