© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS100_1|g1560.t1 |
| Gene name | |
| Location | scaffold_005:662012..662737 |
| Strand | - |
| Gene length (bp) | 725 |
| Transcript length (bp) | 579 |
| Coding sequence length (bp) | 579 |
| Protein length (aa) | 193 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02845 | CUE | CUE domain | 5.6E-11 | 50 | 89 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0043130 | ubiquitin binding | Yes |
| GO:0032182 | ubiquitin-like protein binding | No |
| GO:0005515 | protein binding | No |
| GO:0005488 | binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 36 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 10 | 29 | 19 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g1560.t1 MPEEEPSLNIPSLLTLAVVSFFVLRWFLNRDGGEAGPGSSRSRARGTVDPAQVEQISQMFPQLSAREIMWDLQRN GGSVAATTERILTGRGLEVPPPSFQPQIAIPTTAPVQSQPTQTATSKADAQDLISRYNLRAKLEAENSAAESAPS QASSTTGWSQSKEERQRLLQKRRDEMILAARRKMMQKDQAAQ* |
| Coding | >Ani_SJS100_1|g1560.t1 ATGCCAGAAGAAGAGCCGTCTCTGAACATCCCCTCTCTCCTCACCCTCGCTGTGGTGTCATTCTTCGTGCTGCGA TGGTTTCTCAACCGCGATGGAGGAGAGGCCGGACCCGGCAGCAGTCGCAGTCGGGCGCGAGGCACCGTCGACCCA GCCCAAGTCGAGCAAATATCCCAGATGTTCCCTCAGCTCAGCGCCCGTGAGATCATGTGGGATTTGCAGCGCAAC GGGGGAAGTGTTGCGGCGACAACGGAGAGAATCCTGACCGGTCGGGGCCTGGAAGTGCCGCCCCCATCCTTCCAA CCTCAGATCGCTATCCCCACTACGGCCCCTGTTCAATCACAACCCACTCAAACGGCGACCTCCAAGGCCGATGCC CAGGACCTGATCTCCCGCTATAATCTCCGCGCGAAACTTGAGGCCGAGAACAGCGCCGCCGAGTCCGCACCGTCG CAGGCTTCTTCCACGACAGGCTGGTCGCAGAGCAAGGAGGAGCGCCAGCGCTTGCTGCAGAAGCGGAGGGACGAG ATGATTCTGGCGGCGCGGAGGAAGATGATGCAGAAGGATCAGGCTGCTCAATGA |
| Transcript | >Ani_SJS100_1|g1560.t1 ATGCCAGAAGAAGAGCCGTCTCTGAACATCCCCTCTCTCCTCACCCTCGCTGTGGTGTCATTCTTCGTGCTGCGA TGGTTTCTCAACCGCGATGGAGGAGAGGCCGGACCCGGCAGCAGTCGCAGTCGGGCGCGAGGCACCGTCGACCCA GCCCAAGTCGAGCAAATATCCCAGATGTTCCCTCAGCTCAGCGCCCGTGAGATCATGTGGGATTTGCAGCGCAAC GGGGGAAGTGTTGCGGCGACAACGGAGAGAATCCTGACCGGTCGGGGCCTGGAAGTGCCGCCCCCATCCTTCCAA CCTCAGATCGCTATCCCCACTACGGCCCCTGTTCAATCACAACCCACTCAAACGGCGACCTCCAAGGCCGATGCC CAGGACCTGATCTCCCGCTATAATCTCCGCGCGAAACTTGAGGCCGAGAACAGCGCCGCCGAGTCCGCACCGTCG CAGGCTTCTTCCACGACAGGCTGGTCGCAGAGCAAGGAGGAGCGCCAGCGCTTGCTGCAGAAGCGGAGGGACGAG ATGATTCTGGCGGCGCGGAGGAAGATGATGCAGAAGGATCAGGCTGCTCAATGA |
| Gene | >Ani_SJS100_1|g1560.t1 ATGCCAGAAGAAGAGCCGTCTCTGAACATCCCCTCTCTCCTCACCCTCGCTGTGGTGTCATTCTTCGTGCTGCGA TGGTTTCTCAACCGCGATGGAGGAGAGGCCGGACCCGGCAGCAGTCGCAGTCGGGCGCGAGGCACCGTCGACCCA GCCCAAGTCGAGCAAATATCCCAGATGTTCCCTCAGCTCAGCGCCCGTGAGATCATGTGGGATTTGCAGCGCAAC GGGGGAAGTGTTGCGGCGACAACGGAGAGAATCCTGACCGGTCGGGGCCTGGAAGTGGTGAGTTTATTCCCTTAT TCCTTCCTCTCTTGGATGCATCTTGACCTGCGTCGCTGGTCATTCATCATCTGCTCCTCTTTCTTCCCCTATCTC GTTCCCCCGCATTGAGTCAGATGCATAGCCAGCTAACCCAAACTACCTTGTAGCCGCCCCCATCCTTCCAACCTC AGATCGCTATCCCCACTACGGCCCCTGTTCAATCACAACCCACTCAAACGGCGACCTCCAAGGCCGATGCCCAGG ACCTGATCTCCCGCTATAATCTCCGCGCGAAACTTGAGGCCGAGAACAGCGCCGCCGAGTCCGCACCGTCGCAGG CTTCTTCCACGACAGGCTGGTCGCAGAGCAAGGAGGAGCGCCAGCGCTTGCTGCAGAAGCGGAGGGACGAGATGA TTCTGGCGGCGCGGAGGAAGATGATGCAGAAGGATCAGGCTGCTCAATGA |