© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS100_1|g1533.t1 |
| Gene name | |
| Location | scaffold_005:597394..598732 |
| Strand | + |
| Gene length (bp) | 1338 |
| Transcript length (bp) | 1338 |
| Coding sequence length (bp) | 1338 |
| Protein length (aa) | 446 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04090 | RNA_pol_I_TF | RNA polymerase I specific initiation factor | 4.5E-10 | 118 | 358 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0001164 | RNA polymerase I core promoter sequence-specific DNA binding | Yes |
| GO:0001181 | RNA polymerase I general transcription initiation factor activity | Yes |
| GO:0006361 | transcription initiation from RNA polymerase I promoter | Yes |
| GO:0003674 | molecular_function | No |
| GO:0009058 | biosynthetic process | No |
| GO:0003677 | DNA binding | No |
| GO:1901576 | organic substance biosynthetic process | No |
| GO:0019438 | aromatic compound biosynthetic process | No |
| GO:0006352 | DNA-templated transcription, initiation | No |
| GO:0043565 | sequence-specific DNA binding | No |
| GO:0008152 | metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003690 | double-stranded DNA binding | No |
| GO:0034654 | nucleobase-containing compound biosynthetic process | No |
| GO:0044271 | cellular nitrogen compound biosynthetic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0044249 | cellular biosynthetic process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0016070 | RNA metabolic process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0001046 | core promoter sequence-specific DNA binding | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0001067 | transcription regulatory region nucleic acid binding | No |
| GO:0009059 | macromolecule biosynthetic process | No |
| GO:0005488 | binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0018130 | heterocycle biosynthetic process | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0000976 | transcription cis-regulatory region binding | No |
| GO:1990837 | sequence-specific double-stranded DNA binding | No |
| GO:0008150 | biological_process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:1901362 | organic cyclic compound biosynthetic process | No |
| GO:0032774 | RNA biosynthetic process | No |
| GO:0001163 | RNA polymerase I transcription regulatory region sequence-specific DNA binding | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0140223 | general transcription initiation factor activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 23 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g1533.t1 MASVPAASVFSLPLAPWQQPSSVRVAQYEPRKRKKDLNDWGDDDDDVDGDTTDAASEAAASGPSLILSPDEAHQY RIAGLSFDQELPGGNFPHAPVKDQPTRRQTRNQVLKELTSLSSPIYPPQSAAHQGNLRLQHLAVLSSILHRCLLQ KDFVRAGRAWGLILREEVGGTPIDVRTEGRWGIGAEILLRRDCQVSDMTPDNAQESEAEPSEAPFSKLLFTRQGF EKAKQYYETLIIQHPYRKAAPDAISSLHFYPAMFGLWVYVTQEESNVSRQKIWDAHGASPDDSEEEDSAPDMQHH SSSRQNTHAMVASVRKSELEQAQKIAARMDEILGSPPYSDSPELLELRGMISLWIADLFVSSLPYARTEGDLDGY DSDETGSSSAEDLQDSLQERRERRLAVERKEYEVQKSQDYFEKAKHRGKGVTSTFGDLHIDDDASFGYAD* |
| Coding | >Ani_SJS100_1|g1533.t1 ATGGCATCTGTTCCTGCAGCGTCTGTCTTTTCTTTGCCCCTAGCCCCATGGCAACAACCTTCTAGTGTGCGCGTG GCTCAGTACGAGCCTAGGAAGCGCAAGAAGGATCTCAACGACTGGGGGGACGATGATGACGATGTTGATGGCGAC ACAACAGATGCGGCATCAGAGGCAGCTGCTTCTGGTCCGTCCCTCATCCTCTCCCCGGATGAAGCCCACCAATAT CGCATTGCTGGCCTTTCCTTTGACCAAGAACTGCCCGGGGGCAATTTCCCACATGCCCCGGTTAAAGATCAACCG ACCCGTCGGCAGACACGAAATCAGGTCCTGAAAGAATTGACGTCATTGTCGTCTCCCATCTATCCTCCCCAGTCT GCAGCTCATCAAGGGAATCTTCGTCTTCAGCATCTGGCTGTGCTATCCTCCATCTTGCACCGTTGCCTACTTCAG AAAGACTTCGTTCGAGCGGGCAGGGCCTGGGGGTTAATCCTCCGTGAAGAAGTTGGGGGCACCCCAATCGACGTT CGCACTGAAGGGAGATGGGGCATTGGCGCAGAAATCCTGCTCCGACGTGACTGTCAGGTCTCGGACATGACTCCT GATAATGCGCAGGAAAGTGAGGCAGAGCCGTCTGAGGCACCGTTTTCCAAATTATTATTCACAAGGCAGGGGTTT GAAAAGGCCAAACAGTATTACGAGACGCTCATCATTCAGCATCCATACCGAAAAGCTGCACCTGACGCTATAAGC TCTCTACACTTCTATCCTGCCATGTTTGGACTATGGGTGTATGTCACCCAAGAGGAGAGCAACGTTTCTCGACAA AAAATATGGGACGCCCATGGTGCTTCCCCTGATGACTCGGAAGAAGAAGATTCTGCGCCCGATATGCAACACCAT TCTAGCTCACGACAGAATACGCATGCGATGGTTGCCAGTGTTAGGAAGAGTGAACTGGAACAGGCCCAGAAGATC GCAGCTAGGATGGATGAGATTCTCGGATCCCCTCCGTACTCCGACTCCCCGGAGTTGCTGGAGCTCCGCGGAATG ATATCTCTCTGGATCGCTGATCTCTTCGTCTCATCACTGCCATATGCGCGGACAGAGGGAGATCTGGATGGTTAC GATTCGGATGAGACCGGTTCGTCATCCGCGGAAGATCTCCAAGACTCACTTCAAGAGCGGCGAGAACGCCGTCTT GCAGTTGAGAGGAAGGAATATGAGGTCCAAAAATCGCAGGATTACTTTGAAAAAGCCAAACATCGTGGCAAGGGA GTCACCTCTACGTTTGGAGACCTGCATATAGATGATGATGCTTCATTTGGGTATGCGGATTAA |
| Transcript | >Ani_SJS100_1|g1533.t1 ATGGCATCTGTTCCTGCAGCGTCTGTCTTTTCTTTGCCCCTAGCCCCATGGCAACAACCTTCTAGTGTGCGCGTG GCTCAGTACGAGCCTAGGAAGCGCAAGAAGGATCTCAACGACTGGGGGGACGATGATGACGATGTTGATGGCGAC ACAACAGATGCGGCATCAGAGGCAGCTGCTTCTGGTCCGTCCCTCATCCTCTCCCCGGATGAAGCCCACCAATAT CGCATTGCTGGCCTTTCCTTTGACCAAGAACTGCCCGGGGGCAATTTCCCACATGCCCCGGTTAAAGATCAACCG ACCCGTCGGCAGACACGAAATCAGGTCCTGAAAGAATTGACGTCATTGTCGTCTCCCATCTATCCTCCCCAGTCT GCAGCTCATCAAGGGAATCTTCGTCTTCAGCATCTGGCTGTGCTATCCTCCATCTTGCACCGTTGCCTACTTCAG AAAGACTTCGTTCGAGCGGGCAGGGCCTGGGGGTTAATCCTCCGTGAAGAAGTTGGGGGCACCCCAATCGACGTT CGCACTGAAGGGAGATGGGGCATTGGCGCAGAAATCCTGCTCCGACGTGACTGTCAGGTCTCGGACATGACTCCT GATAATGCGCAGGAAAGTGAGGCAGAGCCGTCTGAGGCACCGTTTTCCAAATTATTATTCACAAGGCAGGGGTTT GAAAAGGCCAAACAGTATTACGAGACGCTCATCATTCAGCATCCATACCGAAAAGCTGCACCTGACGCTATAAGC TCTCTACACTTCTATCCTGCCATGTTTGGACTATGGGTGTATGTCACCCAAGAGGAGAGCAACGTTTCTCGACAA AAAATATGGGACGCCCATGGTGCTTCCCCTGATGACTCGGAAGAAGAAGATTCTGCGCCCGATATGCAACACCAT TCTAGCTCACGACAGAATACGCATGCGATGGTTGCCAGTGTTAGGAAGAGTGAACTGGAACAGGCCCAGAAGATC GCAGCTAGGATGGATGAGATTCTCGGATCCCCTCCGTACTCCGACTCCCCGGAGTTGCTGGAGCTCCGCGGAATG ATATCTCTCTGGATCGCTGATCTCTTCGTCTCATCACTGCCATATGCGCGGACAGAGGGAGATCTGGATGGTTAC GATTCGGATGAGACCGGTTCGTCATCCGCGGAAGATCTCCAAGACTCACTTCAAGAGCGGCGAGAACGCCGTCTT GCAGTTGAGAGGAAGGAATATGAGGTCCAAAAATCGCAGGATTACTTTGAAAAAGCCAAACATCGTGGCAAGGGA GTCACCTCTACGTTTGGAGACCTGCATATAGATGATGATGCTTCATTTGGGTATGCGGATTAA |
| Gene | >Ani_SJS100_1|g1533.t1 ATGGCATCTGTTCCTGCAGCGTCTGTCTTTTCTTTGCCCCTAGCCCCATGGCAACAACCTTCTAGTGTGCGCGTG GCTCAGTACGAGCCTAGGAAGCGCAAGAAGGATCTCAACGACTGGGGGGACGATGATGACGATGTTGATGGCGAC ACAACAGATGCGGCATCAGAGGCAGCTGCTTCTGGTCCGTCCCTCATCCTCTCCCCGGATGAAGCCCACCAATAT CGCATTGCTGGCCTTTCCTTTGACCAAGAACTGCCCGGGGGCAATTTCCCACATGCCCCGGTTAAAGATCAACCG ACCCGTCGGCAGACACGAAATCAGGTCCTGAAAGAATTGACGTCATTGTCGTCTCCCATCTATCCTCCCCAGTCT GCAGCTCATCAAGGGAATCTTCGTCTTCAGCATCTGGCTGTGCTATCCTCCATCTTGCACCGTTGCCTACTTCAG AAAGACTTCGTTCGAGCGGGCAGGGCCTGGGGGTTAATCCTCCGTGAAGAAGTTGGGGGCACCCCAATCGACGTT CGCACTGAAGGGAGATGGGGCATTGGCGCAGAAATCCTGCTCCGACGTGACTGTCAGGTCTCGGACATGACTCCT GATAATGCGCAGGAAAGTGAGGCAGAGCCGTCTGAGGCACCGTTTTCCAAATTATTATTCACAAGGCAGGGGTTT GAAAAGGCCAAACAGTATTACGAGACGCTCATCATTCAGCATCCATACCGAAAAGCTGCACCTGACGCTATAAGC TCTCTACACTTCTATCCTGCCATGTTTGGACTATGGGTGTATGTCACCCAAGAGGAGAGCAACGTTTCTCGACAA AAAATATGGGACGCCCATGGTGCTTCCCCTGATGACTCGGAAGAAGAAGATTCTGCGCCCGATATGCAACACCAT TCTAGCTCACGACAGAATACGCATGCGATGGTTGCCAGTGTTAGGAAGAGTGAACTGGAACAGGCCCAGAAGATC GCAGCTAGGATGGATGAGATTCTCGGATCCCCTCCGTACTCCGACTCCCCGGAGTTGCTGGAGCTCCGCGGAATG ATATCTCTCTGGATCGCTGATCTCTTCGTCTCATCACTGCCATATGCGCGGACAGAGGGAGATCTGGATGGTTAC GATTCGGATGAGACCGGTTCGTCATCCGCGGAAGATCTCCAAGACTCACTTCAAGAGCGGCGAGAACGCCGTCTT GCAGTTGAGAGGAAGGAATATGAGGTCCAAAAATCGCAGGATTACTTTGAAAAAGCCAAACATCGTGGCAAGGGA GTCACCTCTACGTTTGGAGACCTGCATATAGATGATGATGCTTCATTTGGGTATGCGGATTAA |