Protein ID | Ani_SJS100_1|g1507.t1 |
Gene name | |
Location | scaffold_005:485781..486683 |
Strand | + |
Gene length (bp) | 902 |
Transcript length (bp) | 828 |
Coding sequence length (bp) | 828 |
Protein length (aa) | 276 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF04479 | RTA1 | RTA1 like protein | 1.1E-57 | 52 | 254 |
GO Term | Description | Terminal node |
---|---|---|
GO:0016021 | integral component of membrane | Yes |
GO:0005575 | cellular_component | No |
GO:0110165 | cellular anatomical entity | No |
GO:0031224 | intrinsic component of membrane | No |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 70 | 0.5 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 20 | 39 | 19 |
2 | 46 | 68 | 22 |
3 | 78 | 100 | 22 |
4 | 113 | 135 | 22 |
5 | 155 | 177 | 22 |
6 | 189 | 211 | 22 |
7 | 226 | 248 | 22 |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ani_SJS100_1|g1507.t1 MAKLEPFSGDYYLWDYVPSIAASIIFFLIYLALTLFHVWKAWITRARFCIPFIIGGFFEVIGFAVRAACTNATAN LILYILQSVFILIGPVLFSASVYMVLGRLIRSVNAEKYSLIRITRVTKVFVTGDILSFLVQGQGSGLMATDGLEN IAKAIVIIGLMIQIIMFGFFIVVATVFEKRMKRAPTSQAPYTHHLYPLYAVSWLIMLRSIFRVFEYALGQKGYLL AHEWPLFVFDAVPMSAVMVVWGYWHPGTLKAEGGLGAQQEVGMGWYRSMA* |
Coding | >Ani_SJS100_1|g1507.t1 ATGGCAAAACTCGAACCTTTTAGCGGCGACTACTATCTATGGGACTATGTCCCTTCCATAGCCGCCTCGATCATC TTCTTCCTCATCTACCTCGCTCTAACTCTATTCCATGTCTGGAAGGCCTGGATAACCCGCGCACGCTTCTGCATC CCCTTCATCATCGGTGGATTCTTTGAAGTAATCGGCTTCGCCGTCCGCGCCGCGTGCACCAACGCAACCGCCAAC CTAATCCTCTACATCCTGCAAAGCGTCTTCATCCTAATCGGCCCCGTTCTCTTCTCCGCAAGCGTCTACATGGTC CTAGGCCGTCTGATTCGCAGCGTCAACGCAGAAAAGTACTCCCTCATCCGCATCACCCGAGTAACCAAAGTCTTC GTCACCGGCGACATCCTCTCATTCCTAGTACAGGGCCAAGGCTCAGGGTTAATGGCCACGGACGGCCTAGAGAAC ATAGCAAAAGCCATCGTGATCATTGGATTGATGATCCAGATCATCATGTTTGGATTCTTCATCGTCGTAGCTACG GTCTTTGAGAAGAGGATGAAGCGCGCGCCGACGAGTCAGGCGCCGTACACGCATCATCTGTACCCTTTGTATGCG GTTAGTTGGCTGATTATGCTCCGCTCTATCTTTCGGGTTTTTGAGTATGCGTTGGGGCAGAAGGGCTATCTTTTG GCGCATGAGTGGCCGCTTTTTGTGTTTGATGCGGTGCCGATGTCTGCTGTGATGGTTGTCTGGGGGTATTGGCAT CCTGGGACGTTGAAGGCAGAGGGGGGTCTGGGGGCGCAGCAGGAGGTGGGGATGGGCTGGTATCGGAGTATGGCA TAG |
Transcript | >Ani_SJS100_1|g1507.t1 ATGGCAAAACTCGAACCTTTTAGCGGCGACTACTATCTATGGGACTATGTCCCTTCCATAGCCGCCTCGATCATC TTCTTCCTCATCTACCTCGCTCTAACTCTATTCCATGTCTGGAAGGCCTGGATAACCCGCGCACGCTTCTGCATC CCCTTCATCATCGGTGGATTCTTTGAAGTAATCGGCTTCGCCGTCCGCGCCGCGTGCACCAACGCAACCGCCAAC CTAATCCTCTACATCCTGCAAAGCGTCTTCATCCTAATCGGCCCCGTTCTCTTCTCCGCAAGCGTCTACATGGTC CTAGGCCGTCTGATTCGCAGCGTCAACGCAGAAAAGTACTCCCTCATCCGCATCACCCGAGTAACCAAAGTCTTC GTCACCGGCGACATCCTCTCATTCCTAGTACAGGGCCAAGGCTCAGGGTTAATGGCCACGGACGGCCTAGAGAAC ATAGCAAAAGCCATCGTGATCATTGGATTGATGATCCAGATCATCATGTTTGGATTCTTCATCGTCGTAGCTACG GTCTTTGAGAAGAGGATGAAGCGCGCGCCGACGAGTCAGGCGCCGTACACGCATCATCTGTACCCTTTGTATGCG GTTAGTTGGCTGATTATGCTCCGCTCTATCTTTCGGGTTTTTGAGTATGCGTTGGGGCAGAAGGGCTATCTTTTG GCGCATGAGTGGCCGCTTTTTGTGTTTGATGCGGTGCCGATGTCTGCTGTGATGGTTGTCTGGGGGTATTGGCAT CCTGGGACGTTGAAGGCAGAGGGGGGTCTGGGGGCGCAGCAGGAGGTGGGGATGGGCTGGTATCGGAGTATGGCA TAG |
Gene | >Ani_SJS100_1|g1507.t1 ATGGCAAAACTCGAACCTTTTAGCGGCGACTACTATCTATGGGACTATGTCCCTTCCATAGCCGCCTCGATCATC TTCTTCCTCATCTACCTCGCTCTAACTCTATTCCATGTCTGGAAGGCCTGGATAACCCGCGCACGCTTCTGCATC CCCTTCATCATCGGTGGATTCTGTACGTCCTTCCTCTTTTTACCTGTCCCTGCCATCTCGTTCACCATGACCCCT AACCATATGCAATCCACGCAGTTGAAGTAATCGGCTTCGCCGTCCGCGCCGCGTGCACCAACGCAACCGCCAACC TAATCCTCTACATCCTGCAAAGCGTCTTCATCCTAATCGGCCCCGTTCTCTTCTCCGCAAGCGTCTACATGGTCC TAGGCCGTCTGATTCGCAGCGTCAACGCAGAAAAGTACTCCCTCATCCGCATCACCCGAGTAACCAAAGTCTTCG TCACCGGCGACATCCTCTCATTCCTAGTACAGGGCCAAGGCTCAGGGTTAATGGCCACGGACGGCCTAGAGAACA TAGCAAAAGCCATCGTGATCATTGGATTGATGATCCAGATCATCATGTTTGGATTCTTCATCGTCGTAGCTACGG TCTTTGAGAAGAGGATGAAGCGCGCGCCGACGAGTCAGGCGCCGTACACGCATCATCTGTACCCTTTGTATGCGG TTAGTTGGCTGATTATGCTCCGCTCTATCTTTCGGGTTTTTGAGTATGCGTTGGGGCAGAAGGGCTATCTTTTGG CGCATGAGTGGCCGCTTTTTGTGTTTGATGCGGTGCCGATGTCTGCTGTGATGGTTGTCTGGGGGTATTGGCATC CTGGGACGTTGAAGGCAGAGGGGGGTCTGGGGGCGCAGCAGGAGGTGGGGATGGGCTGGTATCGGAGTATGGCAT AG |