© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS100_1|g1490.t1 |
| Gene name | |
| Location | scaffold_005:448874..450409 |
| Strand | - |
| Gene length (bp) | 1535 |
| Transcript length (bp) | 1377 |
| Coding sequence length (bp) | 1377 |
| Protein length (aa) | 459 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13639 | zf-RING_2 | Ring finger domain | 2.2E-13 | 314 | 356 |
| PF17123 | zf-RING_11 | RING-like zinc finger | 1.0E-12 | 314 | 342 |
| PF13923 | zf-C3HC4_2 | Zinc finger, C3HC4 type (RING finger) | 1.2E-09 | 314 | 355 |
| PF13920 | zf-C3HC4_3 | Zinc finger, C3HC4 type (RING finger) | 4.0E-08 | 313 | 360 |
| PF12678 | zf-rbx1 | RING-H2 zinc finger domain | 2.3E-07 | 318 | 356 |
| PF00097 | zf-C3HC4 | Zinc finger, C3HC4 type (RING finger) | 5.0E-06 | 315 | 355 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0046872 | metal ion binding | Yes |
| GO:0008270 | zinc ion binding | Yes |
| GO:0043169 | cation binding | No |
| GO:0005488 | binding | No |
| GO:0043167 | ion binding | No |
| GO:0046914 | transition metal ion binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 24 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g1490.t1 MADVGDRMFCHACGGVWLREAHGMICPHCESDFTEIIEIPPDPDAEPPPSFHRPPSPPAADNARSPNPWADHNPW AHQEEDDDIDHGWGPGHGNGFTHRTYRSPDGRFTFSTTTYTHGLRGGSPPTQQRQANPDPLMPMVQGLDSIFHGL ASTYRQQNRPGGQAQAPGSDRDRGRTLGSFAFDIEAEGRTGTQAGGLHPRDADGPQPVNNPLRTLGDILELFRSD FGTNTQAGGTGGVRVMTGPNPLAMLSTLLNFDRHGDAVYSQEELDRVISQLMEQNANRGAPPPAPPSAIQSLPKK KVDEEMLGSEGRAECSICMDAVELGTEVTVLPCSHWFHYSCIELWLNQHNTCPHCRRSIDAPQSESANSPPGNRP AAEGTSGNPVVIPDSPERERSQPSAARDAASPSGWSSQSFSSWSSPWSGSEAPEQQQQRRSSRGEGSGGFTGWVR SRLGGGSS* |
| Coding | >Ani_SJS100_1|g1490.t1 ATGGCCGACGTGGGGGATCGCATGTTCTGCCATGCTTGTGGCGGCGTCTGGCTGCGCGAAGCCCACGGCATGATC TGTCCGCACTGCGAGTCAGACTTTACGGAAATTATCGAAATCCCGCCAGATCCCGACGCCGAACCCCCGCCCTCA TTCCACCGCCCCCCCTCGCCCCCCGCCGCGGACAACGCCCGCTCCCCGAACCCATGGGCAGACCATAATCCCTGG GCACACCAGGAGGAAGATGATGATATCGATCATGGTTGGGGACCGGGACATGGAAATGGATTCACCCATCGCACA TATCGGTCCCCGGACGGCCGCTTCACCTTTTCCACCACAACCTATACCCACGGTCTCCGAGGGGGGTCACCCCCA ACCCAACAGCGACAAGCGAACCCCGACCCACTGATGCCGATGGTGCAGGGTCTAGACAGCATCTTCCATGGTCTC GCAAGCACCTACAGACAGCAAAACCGCCCAGGCGGCCAAGCTCAGGCTCCAGGCTCGGATCGCGACCGCGGGAGG ACACTGGGATCTTTTGCGTTCGACATCGAGGCGGAGGGCCGGACCGGCACGCAGGCCGGCGGTCTGCACCCGCGA GATGCGGATGGTCCGCAACCGGTGAATAATCCTCTGCGGACTCTGGGCGATATTTTGGAGCTGTTCCGCTCGGAT TTCGGTACAAATACACAGGCAGGCGGCACTGGCGGCGTGCGGGTGATGACGGGGCCAAATCCCCTCGCCATGCTG TCCACGCTGCTAAACTTTGATCGTCATGGAGACGCAGTATACTCGCAAGAGGAGCTGGACCGCGTGATCTCTCAG CTGATGGAACAGAACGCCAATCGGGGAGCGCCACCACCAGCCCCGCCCAGTGCGATCCAATCGCTGCCGAAGAAG AAGGTCGATGAGGAGATGCTGGGGAGCGAAGGGCGAGCGGAATGCTCGATTTGCATGGACGCGGTGGAACTAGGG ACAGAGGTCACGGTGCTACCTTGCAGCCACTGGTTTCACTACAGCTGCATCGAGCTGTGGCTGAACCAGCACAAC ACGTGTCCGCACTGTCGGCGAAGCATTGATGCGCCCCAATCCGAAAGCGCCAACAGTCCTCCCGGAAACCGGCCA GCAGCAGAGGGCACAAGCGGCAACCCAGTAGTTATTCCCGACAGTCCGGAGCGCGAACGGAGCCAGCCATCAGCA GCGCGAGACGCTGCATCACCATCGGGCTGGAGCTCACAGTCATTCTCCTCGTGGTCATCGCCATGGTCAGGCTCA GAGGCCCCAGAGCAACAACAACAACGCCGGAGTAGTCGCGGAGAAGGGTCCGGAGGGTTTACGGGATGGGTGCGC AGCCGACTCGGCGGAGGGAGCAGCTGA |
| Transcript | >Ani_SJS100_1|g1490.t1 ATGGCCGACGTGGGGGATCGCATGTTCTGCCATGCTTGTGGCGGCGTCTGGCTGCGCGAAGCCCACGGCATGATC TGTCCGCACTGCGAGTCAGACTTTACGGAAATTATCGAAATCCCGCCAGATCCCGACGCCGAACCCCCGCCCTCA TTCCACCGCCCCCCCTCGCCCCCCGCCGCGGACAACGCCCGCTCCCCGAACCCATGGGCAGACCATAATCCCTGG GCACACCAGGAGGAAGATGATGATATCGATCATGGTTGGGGACCGGGACATGGAAATGGATTCACCCATCGCACA TATCGGTCCCCGGACGGCCGCTTCACCTTTTCCACCACAACCTATACCCACGGTCTCCGAGGGGGGTCACCCCCA ACCCAACAGCGACAAGCGAACCCCGACCCACTGATGCCGATGGTGCAGGGTCTAGACAGCATCTTCCATGGTCTC GCAAGCACCTACAGACAGCAAAACCGCCCAGGCGGCCAAGCTCAGGCTCCAGGCTCGGATCGCGACCGCGGGAGG ACACTGGGATCTTTTGCGTTCGACATCGAGGCGGAGGGCCGGACCGGCACGCAGGCCGGCGGTCTGCACCCGCGA GATGCGGATGGTCCGCAACCGGTGAATAATCCTCTGCGGACTCTGGGCGATATTTTGGAGCTGTTCCGCTCGGAT TTCGGTACAAATACACAGGCAGGCGGCACTGGCGGCGTGCGGGTGATGACGGGGCCAAATCCCCTCGCCATGCTG TCCACGCTGCTAAACTTTGATCGTCATGGAGACGCAGTATACTCGCAAGAGGAGCTGGACCGCGTGATCTCTCAG CTGATGGAACAGAACGCCAATCGGGGAGCGCCACCACCAGCCCCGCCCAGTGCGATCCAATCGCTGCCGAAGAAG AAGGTCGATGAGGAGATGCTGGGGAGCGAAGGGCGAGCGGAATGCTCGATTTGCATGGACGCGGTGGAACTAGGG ACAGAGGTCACGGTGCTACCTTGCAGCCACTGGTTTCACTACAGCTGCATCGAGCTGTGGCTGAACCAGCACAAC ACGTGTCCGCACTGTCGGCGAAGCATTGATGCGCCCCAATCCGAAAGCGCCAACAGTCCTCCCGGAAACCGGCCA GCAGCAGAGGGCACAAGCGGCAACCCAGTAGTTATTCCCGACAGTCCGGAGCGCGAACGGAGCCAGCCATCAGCA GCGCGAGACGCTGCATCACCATCGGGCTGGAGCTCACAGTCATTCTCCTCGTGGTCATCGCCATGGTCAGGCTCA GAGGCCCCAGAGCAACAACAACAACGCCGGAGTAGTCGCGGAGAAGGGTCCGGAGGGTTTACGGGATGGGTGCGC AGCCGACTCGGCGGAGGGAGCAGCTGA |
| Gene | >Ani_SJS100_1|g1490.t1 ATGGCCGACGTGGGGGATCGCATGTTCTGCCATGCTTGTGGCGGCGTCTGGCTGCGCGAAGCCCACGGCATGATC TGTCCGCACTGCGAGTCAGACTTTACGGAAATTGTATGATCTCTTCCTCTATCGGTTCCTTCATCCCTATCTGAC CATTCCAGATCGAAATCCCGCCAGATCCCGACGCCGAACCCCCGCCCTCATTCCACCGCCCCCCCTCGCCCCCCG CCGCGGACAACGCCCGCTCCCCGAACCCATGGGCAGACCATAATCCCTGGGCACACCAGGAGGAAGATGATGATA TCGATCATGGTTGGGGACCGGGACATGGAAATGGATTCACCCATCGCACATATCGGTCCCCGGACGGCCGCTTCA CCTTTTCCACCACAACCTATACCCACGGTCTCCGAGGGGGGTCACCCCCAACCCAACAGCGACAAGCGAACCCCG ACCCACTGATGCCGATGGTGCAGGGTCTAGACAGCATCTTCCATGGTCTCGCAAGCACCTACAGACAGCAAAACC GCCCAGGCGGCCAAGCTCAGGCTCCAGGCTCGGATCGCGACCGCGGGAGGACACTGGGATCTTTTGCGTTCGACA TCGAGGCGGAGGGCCGGACCGGCACGCAGGCCGGCGGTCTGCACCCGCGAGATGCGGATGGTCCGCAACCGGTGA ATAATCCTCTGCGGACTCTGGGCGAGTAGGTGCTGCTGATGACGTTACTGCACGTTGCAGGGCTAACGAATATCA GTATTTTGGAGCTGTTCCGCTCGGATTTCGGTACAAATACACAGGCAGGCGGCACTGGCGGCGTGCGGGTGATGA CGGGGCCAAATCCCCTCGCCATGCTGTCCACGCTGCTAAACTTTGATCGTCATGGAGACGCAGTATACTCGCAAG AGGAGCTGGACCGCGTGATCTCTCAGCTGATGGAACAGAACGCCAATCGGGGAGCGCCACCACCAGCCCCGCCCA GTGCGATCCAATCGCTGCCGAAGAAGAAGGTCGATGAGGAGATGCTGGGGAGCGAAGGGCGAGCGGAATGCTCGA TTTGCATGGACGCGGTGGAACTAGGGACAGAGGTCACGGTGCTACCTTGCAGCCACTGGTTTCACTACAGCTGCA TCGAGCTGTGGCTGAACCAGCACAACACGTGTCCGCACTGTCGGCGAAGCATTGATGCGCCCCAGTGAGTTCCCT TTTCTATGTTTGCTTCGTTACGCAGACCCTCTCTAACGACATGCAGATCCGAAAGCGCCAACAGTCCTCCCGGAA ACCGGCCAGCAGCAGAGGGCACAAGCGGCAACCCAGTAGTTATTCCCGACAGTCCGGAGCGCGAACGGAGCCAGC CATCAGCAGCGCGAGACGCTGCATCACCATCGGGCTGGAGCTCACAGTCATTCTCCTCGTGGTCATCGCCATGGT CAGGCTCAGAGGCCCCAGAGCAACAACAACAACGCCGGAGTAGTCGCGGAGAAGGGTCCGGAGGGTTTACGGGAT GGGTGCGCAGCCGACTCGGCGGAGGGAGCAGCTGA |