© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS100_1|g1489.t1 |
| Gene name | |
| Location | scaffold_005:445852..448158 |
| Strand | + |
| Gene length (bp) | 2306 |
| Transcript length (bp) | 2172 |
| Coding sequence length (bp) | 2172 |
| Protein length (aa) | 724 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00290 | Trp_syntA | Tryptophan synthase alpha chain | 2.6E-91 | 8 | 254 |
| PF00291 | PALP | Pyridoxal-phosphate dependent enzyme | 3.0E-51 | 374 | 697 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006568 | tryptophan metabolic process | Yes |
| GO:0004834 | tryptophan synthase activity | Yes |
| GO:0009072 | aromatic amino acid family metabolic process | No |
| GO:0006082 | organic acid metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:0044106 | cellular amine metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0042430 | indole-containing compound metabolic process | No |
| GO:0019752 | carboxylic acid metabolic process | No |
| GO:0044281 | small molecule metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0016829 | lyase activity | No |
| GO:0006576 | cellular biogenic amine metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0016835 | carbon-oxygen lyase activity | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0009308 | amine metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0006520 | cellular amino acid metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0043436 | oxoacid metabolic process | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0003824 | catalytic activity | No |
| GO:0006586 | indolalkylamine metabolic process | No |
| GO:1901605 | alpha-amino acid metabolic process | No |
| GO:0016836 | hydro-lyase activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g1489.t1 MDGIKNAFARAKQEKRAALVAYFTAGYPTVEETVDVLMGLENGGADIIEMGVPFTDPIADGPTIQKANTQALANG VTIPMVLDQVRAARSRGLRAPVLLMGYYNPLMQYGEELMLQHCKEAGVNGFIMVDLPPEEAVRFRDLCASAGLSY VPLIAPATSESRMKLLCKIADSFIYVVSRMGVTGATGKLSSNLPELLSRVHTWSGNVPTALGFGVSTREHFLSVQ NISEGVVIGSQIITVLGDAPAGQAAKHAQDYLTSVTGRRLERDAQGKVTGSVNVLDPVLKEAPPALSQPTDVITN DDTPAGPGLVDQIEALNGSGDPALIPSRFGEFGGQYVPESLMDCLAELERGFDEARNDPKFWEEYRSYYPYMGRP SSLHLADRLTEHVGGANIWLKREDLNHTGSHKINNALGQILLARRLGKKRIIAETGAGQHGVATATVCAKFGMEC VVYMGAEDVRRQALNVFRMRLLGASVVAVDAGSRTLRDAVNEALRAWVVHLDTTHYIIGSAIGPHPFPTIVRTFQ SVIGDETKEQMKTLIGKLPDAVVACVGGGSNAVGMFYPFSNDPSVKLLGVEAGGDGVDTDRHSATLSGGSKGVFH GVRTYVLQDKHGQISETHSISAGLDYPGVGPELSNWKDSDRAKFIAATDAEALTGFRALAQTEGIIPALESSHAV FGAMELAKSMKKGDNIVLNLSGRGDKDVQSVADELPRLGPKIGWDLRF* |
| Coding | >Ani_SJS100_1|g1489.t1 ATGGACGGAATCAAGAATGCATTCGCCAGAGCTAAGCAGGAGAAGCGTGCTGCTCTGGTCGCCTACTTCACTGCA GGATATCCTACTGTCGAGGAGACCGTAGATGTTCTGATGGGCCTGGAAAATGGTGGTGCTGACATTATCGAAATG GGTGTCCCTTTCACCGACCCCATCGCAGACGGACCGACTATTCAGAAGGCCAACACTCAGGCTTTGGCCAATGGT GTCACGATCCCCATGGTCCTGGACCAGGTCCGCGCCGCTAGAAGCCGCGGTCTGAGGGCACCCGTTCTTTTGATG GGCTACTACAACCCTCTGATGCAGTATGGTGAGGAGCTCATGCTCCAACACTGCAAGGAAGCCGGCGTCAATGGA TTCATCATGGTCGATCTGCCCCCGGAGGAGGCCGTTCGCTTCAGAGATCTTTGCGCCAGCGCTGGTCTCTCTTAC GTTCCCCTCATTGCTCCCGCCACCTCCGAGTCCCGTATGAAGCTTCTTTGCAAGATTGCCGATTCCTTCATCTAC GTCGTCTCCAGAATGGGTGTCACCGGTGCCACCGGAAAGCTCAGCTCGAACCTGCCCGAACTCCTGTCTCGCGTT CACACTTGGTCCGGAAACGTGCCTACGGCACTAGGATTCGGTGTTAGCACCCGCGAGCACTTCCTGTCCGTCCAG AACATCTCCGAGGGTGTTGTTATTGGTAGTCAGATCATCACCGTTTTGGGTGACGCCCCTGCCGGCCAGGCGGCT AAGCATGCCCAGGACTACCTTACCAGCGTGACCGGTCGTCGCCTTGAGAGAGACGCTCAGGGCAAGGTGACTGGC TCCGTCAACGTGCTTGACCCCGTCCTGAAGGAGGCTCCTCCTGCCCTCTCTCAGCCCACTGATGTCATTACCAAC GACGACACCCCGGCTGGCCCGGGCCTGGTCGACCAGATTGAAGCTCTGAACGGCTCTGGTGACCCTGCTCTCATT CCCTCCCGTTTCGGTGAGTTCGGTGGCCAGTACGTGCCCGAATCCCTGATGGACTGCTTGGCCGAGCTCGAGCGT GGCTTTGATGAGGCGCGCAACGACCCTAAGTTCTGGGAGGAATACCGCTCCTACTACCCCTACATGGGCCGCCCC AGCAGCCTTCATCTTGCTGACCGCTTGACGGAGCATGTCGGCGGTGCCAACATCTGGTTGAAGCGTGAGGATCTT AACCACACTGGAAGTCACAAGATCAACAACGCTCTCGGTCAGATCCTGCTTGCCCGCCGTCTGGGCAAGAAGAGA ATCATTGCCGAGACTGGTGCTGGCCAGCACGGTGTCGCCACGGCTACCGTTTGCGCCAAGTTCGGCATGGAGTGT GTCGTGTACATGGGTGCCGAGGATGTCCGTCGTCAGGCTCTCAATGTCTTCCGTATGAGACTTCTTGGTGCTTCC GTCGTTGCCGTCGACGCCGGCAGCCGCACCCTCCGTGATGCTGTCAACGAGGCCCTCCGCGCCTGGGTTGTCCAC CTCGACACTACCCACTACATCATCGGTTCCGCCATCGGGCCTCACCCCTTCCCGACCATCGTGCGTACCTTCCAG TCTGTCATTGGTGATGAAACCAAGGAACAGATGAAGACCCTCATCGGCAAGTTGCCCGATGCTGTCGTCGCCTGC GTCGGTGGTGGCAGTAACGCCGTGGGTATGTTCTACCCCTTCTCAAACGACCCCAGCGTCAAGCTCCTGGGTGTT GAAGCCGGTGGTGATGGTGTCGACACCGACCGCCACTCCGCCACCCTCTCCGGCGGCAGCAAGGGTGTCTTCCAC GGTGTCCGCACCTACGTTCTCCAGGACAAGCACGGCCAGATCTCCGAAACCCACTCCATCTCCGCCGGTCTCGAC TACCCCGGTGTCGGCCCCGAGCTCTCCAACTGGAAGGACAGCGACCGCGCTAAGTTCATTGCCGCCACCGACGCC GAAGCCCTCACCGGCTTCCGTGCTCTCGCTCAGACCGAGGGTATCATCCCCGCTCTGGAGTCCTCCCACGCCGTC TTCGGTGCCATGGAGCTCGCCAAGTCCATGAAGAAGGGTGACAACATCGTCCTTAACCTCAGTGGAAGAGGTGAC AAGGATGTCCAGAGCGTGGCTGATGAGTTGCCTCGTCTGGGTCCTAAGATCGGCTGGGACTTGCGCTTCTAA |
| Transcript | >Ani_SJS100_1|g1489.t1 ATGGACGGAATCAAGAATGCATTCGCCAGAGCTAAGCAGGAGAAGCGTGCTGCTCTGGTCGCCTACTTCACTGCA GGATATCCTACTGTCGAGGAGACCGTAGATGTTCTGATGGGCCTGGAAAATGGTGGTGCTGACATTATCGAAATG GGTGTCCCTTTCACCGACCCCATCGCAGACGGACCGACTATTCAGAAGGCCAACACTCAGGCTTTGGCCAATGGT GTCACGATCCCCATGGTCCTGGACCAGGTCCGCGCCGCTAGAAGCCGCGGTCTGAGGGCACCCGTTCTTTTGATG GGCTACTACAACCCTCTGATGCAGTATGGTGAGGAGCTCATGCTCCAACACTGCAAGGAAGCCGGCGTCAATGGA TTCATCATGGTCGATCTGCCCCCGGAGGAGGCCGTTCGCTTCAGAGATCTTTGCGCCAGCGCTGGTCTCTCTTAC GTTCCCCTCATTGCTCCCGCCACCTCCGAGTCCCGTATGAAGCTTCTTTGCAAGATTGCCGATTCCTTCATCTAC GTCGTCTCCAGAATGGGTGTCACCGGTGCCACCGGAAAGCTCAGCTCGAACCTGCCCGAACTCCTGTCTCGCGTT CACACTTGGTCCGGAAACGTGCCTACGGCACTAGGATTCGGTGTTAGCACCCGCGAGCACTTCCTGTCCGTCCAG AACATCTCCGAGGGTGTTGTTATTGGTAGTCAGATCATCACCGTTTTGGGTGACGCCCCTGCCGGCCAGGCGGCT AAGCATGCCCAGGACTACCTTACCAGCGTGACCGGTCGTCGCCTTGAGAGAGACGCTCAGGGCAAGGTGACTGGC TCCGTCAACGTGCTTGACCCCGTCCTGAAGGAGGCTCCTCCTGCCCTCTCTCAGCCCACTGATGTCATTACCAAC GACGACACCCCGGCTGGCCCGGGCCTGGTCGACCAGATTGAAGCTCTGAACGGCTCTGGTGACCCTGCTCTCATT CCCTCCCGTTTCGGTGAGTTCGGTGGCCAGTACGTGCCCGAATCCCTGATGGACTGCTTGGCCGAGCTCGAGCGT GGCTTTGATGAGGCGCGCAACGACCCTAAGTTCTGGGAGGAATACCGCTCCTACTACCCCTACATGGGCCGCCCC AGCAGCCTTCATCTTGCTGACCGCTTGACGGAGCATGTCGGCGGTGCCAACATCTGGTTGAAGCGTGAGGATCTT AACCACACTGGAAGTCACAAGATCAACAACGCTCTCGGTCAGATCCTGCTTGCCCGCCGTCTGGGCAAGAAGAGA ATCATTGCCGAGACTGGTGCTGGCCAGCACGGTGTCGCCACGGCTACCGTTTGCGCCAAGTTCGGCATGGAGTGT GTCGTGTACATGGGTGCCGAGGATGTCCGTCGTCAGGCTCTCAATGTCTTCCGTATGAGACTTCTTGGTGCTTCC GTCGTTGCCGTCGACGCCGGCAGCCGCACCCTCCGTGATGCTGTCAACGAGGCCCTCCGCGCCTGGGTTGTCCAC CTCGACACTACCCACTACATCATCGGTTCCGCCATCGGGCCTCACCCCTTCCCGACCATCGTGCGTACCTTCCAG TCTGTCATTGGTGATGAAACCAAGGAACAGATGAAGACCCTCATCGGCAAGTTGCCCGATGCTGTCGTCGCCTGC GTCGGTGGTGGCAGTAACGCCGTGGGTATGTTCTACCCCTTCTCAAACGACCCCAGCGTCAAGCTCCTGGGTGTT GAAGCCGGTGGTGATGGTGTCGACACCGACCGCCACTCCGCCACCCTCTCCGGCGGCAGCAAGGGTGTCTTCCAC GGTGTCCGCACCTACGTTCTCCAGGACAAGCACGGCCAGATCTCCGAAACCCACTCCATCTCCGCCGGTCTCGAC TACCCCGGTGTCGGCCCCGAGCTCTCCAACTGGAAGGACAGCGACCGCGCTAAGTTCATTGCCGCCACCGACGCC GAAGCCCTCACCGGCTTCCGTGCTCTCGCTCAGACCGAGGGTATCATCCCCGCTCTGGAGTCCTCCCACGCCGTC TTCGGTGCCATGGAGCTCGCCAAGTCCATGAAGAAGGGTGACAACATCGTCCTTAACCTCAGTGGAAGAGGTGAC AAGGATGTCCAGAGCGTGGCTGATGAGTTGCCTCGTCTGGGTCCTAAGATCGGCTGGGACTTGCGCTTCTAA |
| Gene | >Ani_SJS100_1|g1489.t1 ATGGACGGAATCAAGAATGCATTCGCCAGAGCTAAGCAGGAGAAGCGTGCTGCTCTGGTCGCCTACTTCACTGCA GGATATCCTACTGTCGAGGAGACCGTAGATGTTCTGATGGGCCTGGAAAATGGTGGTGCTGGTATGTTGTCGACC CCCCGCCTTCTGCAACATTTCAAGATGGAGGGGAACTAATCGATGCTGGTGACCTGCAACAGACATTATCGAAAT GGGTGTCCCTTTCACCGACCCCATCGCAGACGGACCGACTATTCAGAAGGCCAACACTCAGGCTTTGGCCAATGG TGTCACGATCCCCATGGTCCTGGACCAGGTCCGCGCCGCTAGAAGCCGCGGTCTGAGGGCACCCGTTCTTTTGAT GGGCTACTACAACCCTCTGATGCAGTATGGTGAGGAGCTCATGCTCCAACACTGCAAGGAAGCCGGCGTCAATGG ATTCATCATGGTCGATCTGCCCCCGGAGGAGGCCGTTCGCTTCAGAGATCTTTGCGCCAGCGCTGGGTACGTTTT GACTGCATCCTGTGCGCAAAATGGGTAGCTGGTCTAACATTTTCTATAGTCTCTCTTACGTTCCCCTCATTGCTC CCGCCACCTCCGAGTCCCGTATGAAGCTTCTTTGCAAGATTGCCGATTCCTTCATCTACGTCGTCTCCAGAATGG GTGTCACCGGTGCCACCGGAAAGCTCAGCTCGAACCTGCCCGAACTCCTGTCTCGCGTTCACACTTGGTCCGGAA ACGTGCCTACGGCACTAGGATTCGGTGTTAGCACCCGCGAGCACTTCCTGTCCGTCCAGAACATCTCCGAGGGTG TTGTTATTGGTAGTCAGATCATCACCGTTTTGGGTGACGCCCCTGCCGGCCAGGCGGCTAAGCATGCCCAGGACT ACCTTACCAGCGTGACCGGTCGTCGCCTTGAGAGAGACGCTCAGGGCAAGGTGACTGGCTCCGTCAACGTGCTTG ACCCCGTCCTGAAGGAGGCTCCTCCTGCCCTCTCTCAGCCCACTGATGTCATTACCAACGACGACACCCCGGCTG GCCCGGGCCTGGTCGACCAGATTGAAGCTCTGAACGGCTCTGGTGACCCTGCTCTCATTCCCTCCCGTTTCGGTG AGTTCGGTGGCCAGTACGTGCCCGAATCCCTGATGGACTGCTTGGCCGAGCTCGAGCGTGGCTTTGATGAGGCGC GCAACGACCCTAAGTTCTGGGAGGAATACCGCTCCTACTACCCCTACATGGGCCGCCCCAGCAGCCTTCATCTTG CTGACCGCTTGACGGAGCATGTCGGCGGTGCCAACATCTGGTTGAAGCGTGAGGATCTTAACCACACTGGAAGTC ACAAGATCAACAACGCTCTCGGTCAGATCCTGCTTGCCCGCCGTCTGGGCAAGAAGAGAATCATTGCCGAGACTG GTGCTGGCCAGCACGGTGTCGCCACGGCTACCGTTTGCGCCAAGTTCGGCATGGAGTGTGTCGTGTACATGGGTG CCGAGGATGTCCGTCGTCAGGCTCTCAATGTCTTCCGTATGAGACTTCTTGGTGCTTCCGTCGTTGCCGTCGACG CCGGCAGCCGCACCCTCCGTGATGCTGTCAACGAGGCCCTCCGCGCCTGGGTTGTCCACCTCGACACTACCCACT ACATCATCGGTTCCGCCATCGGGCCTCACCCCTTCCCGACCATCGTGCGTACCTTCCAGTCTGTCATTGGTGATG AAACCAAGGAACAGATGAAGACCCTCATCGGCAAGTTGCCCGATGCTGTCGTCGCCTGCGTCGGTGGTGGCAGTA ACGCCGTGGGTATGTTCTACCCCTTCTCAAACGACCCCAGCGTCAAGCTCCTGGGTGTTGAAGCCGGTGGTGATG GTGTCGACACCGACCGCCACTCCGCCACCCTCTCCGGCGGCAGCAAGGGTGTCTTCCACGGTGTCCGCACCTACG TTCTCCAGGACAAGCACGGCCAGATCTCCGAAACCCACTCCATCTCCGCCGGTCTCGACTACCCCGGTGTCGGCC CCGAGCTCTCCAACTGGAAGGACAGCGACCGCGCTAAGTTCATTGCCGCCACCGACGCCGAAGCCCTCACCGGCT TCCGTGCTCTCGCTCAGACCGAGGGTATCATCCCCGCTCTGGAGTCCTCCCACGCCGTCTTCGGTGCCATGGAGC TCGCCAAGTCCATGAAGAAGGGTGACAACATCGTCCTTAACCTCAGTGGAAGAGGTGACAAGGATGTCCAGAGCG TGGCTGATGAGTTGCCTCGTCTGGGTCCTAAGATCGGCTGGGACTTGCGCTTCTAA |