Fungal Genomics

at Utrecht University

General Properties

Protein IDAni_SJS100_1|g1473.t1
Gene name
Locationscaffold_005:385079..385721
Strand+
Gene length (bp)642
Transcript length (bp)573
Coding sequence length (bp)573
Protein length (aa) 191

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF03073 TspO_MBR TspO/MBR family 2.8E-41 19 177

GO

GO Term Description Terminal node
GO:0016021 integral component of membrane Yes
GO:0005575 cellular_component No
GO:0110165 cellular anatomical entity No
GO:0031224 intrinsic component of membrane No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 19 0.5

Transmembrane Domains

Domain # Start End Length
1 10 32 22
2 56 78 22
3 126 148 22
4 161 183 22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ani_SJS100_1|g1473.t1
MPWSAALPQAMFAHPLVSVVTPIATGSLVGYHTNRKGRTKQVYHSLKKPPLYPPTWAFPVVWTVLYGMMGFAIHH
ATVSGTIATAYPPSSSSSIVQDWAVKSQTLYISQLALNHLWMPLFFMFRKPAWALADLLLLSGNVATLMHIWWKH
DRVAFWLMTPYAAWLGVATYLNAGVGYLNNWVIGDGRKEE*
Coding >Ani_SJS100_1|g1473.t1
ATGCCCTGGTCCGCCGCTCTCCCTCAGGCGATGTTCGCCCACCCCCTAGTATCCGTCGTGACGCCCATCGCGACG
GGTTCTCTAGTCGGGTACCATACCAACCGCAAAGGTCGCACCAAACAAGTCTACCATTCTCTCAAAAAACCCCCT
CTCTACCCCCCAACCTGGGCCTTCCCGGTCGTCTGGACCGTCCTCTACGGCATGATGGGCTTCGCAATCCACCAC
GCAACAGTATCAGGAACCATAGCTACCGCATACCCACCTTCCTCATCATCATCTATTGTCCAAGACTGGGCCGTC
AAGTCTCAGACCCTATATATTTCCCAGCTGGCGTTGAATCACCTCTGGATGCCGCTGTTCTTCATGTTCCGGAAG
CCGGCGTGGGCGTTGGCGGATCTGCTGCTTCTGAGCGGGAATGTGGCGACGTTGATGCATATCTGGTGGAAGCAT
GACCGGGTGGCGTTCTGGTTGATGACGCCGTATGCGGCTTGGTTGGGGGTTGCGACGTATTTGAATGCTGGGGTG
GGGTACTTGAATAATTGGGTGATTGGGGATGGGAGGAAGGAGGAGTGA
Transcript >Ani_SJS100_1|g1473.t1
ATGCCCTGGTCCGCCGCTCTCCCTCAGGCGATGTTCGCCCACCCCCTAGTATCCGTCGTGACGCCCATCGCGACG
GGTTCTCTAGTCGGGTACCATACCAACCGCAAAGGTCGCACCAAACAAGTCTACCATTCTCTCAAAAAACCCCCT
CTCTACCCCCCAACCTGGGCCTTCCCGGTCGTCTGGACCGTCCTCTACGGCATGATGGGCTTCGCAATCCACCAC
GCAACAGTATCAGGAACCATAGCTACCGCATACCCACCTTCCTCATCATCATCTATTGTCCAAGACTGGGCCGTC
AAGTCTCAGACCCTATATATTTCCCAGCTGGCGTTGAATCACCTCTGGATGCCGCTGTTCTTCATGTTCCGGAAG
CCGGCGTGGGCGTTGGCGGATCTGCTGCTTCTGAGCGGGAATGTGGCGACGTTGATGCATATCTGGTGGAAGCAT
GACCGGGTGGCGTTCTGGTTGATGACGCCGTATGCGGCTTGGTTGGGGGTTGCGACGTATTTGAATGCTGGGGTG
GGGTACTTGAATAATTGGGTGATTGGGGATGGGAGGAAGGAGGAGTGA
Gene >Ani_SJS100_1|g1473.t1
ATGCCCTGGTCCGCCGCTCTCCCTCAGGCGATGTTCGCCCACCCCCTAGTATCCGTCGTGACGCCCATCGCGACG
GGTTCTCTAGTCGGGTACCATACCAACCGTGAGCTTCCCCTACCTATGTCTACCACTCAATTCCACCTCTTTGAG
TTCAAATATTAACTAAAACCAGGCAAAGGTCGCACCAAACAAGTCTACCATTCTCTCAAAAAACCCCCTCTCTAC
CCCCCAACCTGGGCCTTCCCGGTCGTCTGGACCGTCCTCTACGGCATGATGGGCTTCGCAATCCACCACGCAACA
GTATCAGGAACCATAGCTACCGCATACCCACCTTCCTCATCATCATCTATTGTCCAAGACTGGGCCGTCAAGTCT
CAGACCCTATATATTTCCCAGCTGGCGTTGAATCACCTCTGGATGCCGCTGTTCTTCATGTTCCGGAAGCCGGCG
TGGGCGTTGGCGGATCTGCTGCTTCTGAGCGGGAATGTGGCGACGTTGATGCATATCTGGTGGAAGCATGACCGG
GTGGCGTTCTGGTTGATGACGCCGTATGCGGCTTGGTTGGGGGTTGCGACGTATTTGAATGCTGGGGTGGGGTAC
TTGAATAATTGGGTGATTGGGGATGGGAGGAAGGAGGAGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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