© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS100_1|g1450.t1 |
| Gene name | |
| Location | scaffold_005:315303..317848 |
| Strand | - |
| Gene length (bp) | 2545 |
| Transcript length (bp) | 2412 |
| Coding sequence length (bp) | 2412 |
| Protein length (aa) | 804 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04950 | RIBIOP_C | 40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal | 2.4E-108 | 489 | 792 |
| PF08142 | AARP2CN | AARP2CN (NUC121) domain | 2.0E-22 | 234 | 311 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005634 | nucleus | Yes |
| GO:0042254 | ribosome biogenesis | Yes |
| GO:0044085 | cellular component biogenesis | No |
| GO:0071840 | cellular component organization or biogenesis | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0008150 | biological_process | No |
| GO:0043231 | intracellular membrane-bounded organelle | No |
| GO:0043227 | membrane-bounded organelle | No |
| GO:0009987 | cellular process | No |
| GO:0043226 | organelle | No |
| GO:0022613 | ribonucleoprotein complex biogenesis | No |
| GO:0005575 | cellular_component | No |
| GO:0043229 | intracellular organelle | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 63 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g1450.t1 MAPTQTVQHHHRSTTKSANKPYKSRHASKSALKDKAKGKVERQERGTRKTPHQQLKSKLDRRNQARQKQQLKHQE KAQSVSIFSGQNGAPRHVAVVPLSVDIDVAAIIRALNESVDVSAEISPDSATRVRVDRFRQSLQYIPAKYDLMNA LDVCRMADFVVLALSAQVEVEEQGELLLRSIEGQGISNVIAMVQGLDQINPAKKRPQVAASLKSFANHFFPSVEK VLSVDSRQECSNAIRSLCTATPKGIRWRDERSWMFIENVEWPETNAEEVDDFVVTGVVRGKGLKADRLVHIPGWG DFQIGSITAAPLAAARGKRDDAMNVDETEAPQLLDGPSADCDDLATVAPEEIEMEDDDFPVEEERKGVLLDDHHY FSDDESHIPPKPKRLPKGTSEYQSAWFLDDVSDSGSDLEDEEDVEEMEMDTAGAPEDGVFPDNRDAMTEAGPSEY PQSEMFVDPSPEDEAKDLEEYRASRRKEANEDLEFPDEIELHPNVLARERLARFRGLKSFKTSPWETSEDRAYEP EDWRRLLQFADYKGSRNKFLREALVGGVTPGVRVDVHLKAVPATLRSRPQPTSLFSLLRHEHKHTVVNINMHLNS SVEEPLKSKEQLVVQCGPRRLVVNPIFSAGDNTPNNVHKFDRFLHPGRSAVASWIGPLTWGAVPVLVFKNKSNQD PEIMDSAEDDSLNNFDNLELIGNGTIVAPDQSRVVAKRAILTGHPYKIHKRVVTVRYMFFNAEDIQWFKALQLWT RRGRSGYIKESLGTHGYFKATFDAKINPQDSIGISLYKRVFPRKARALEDVVY* |
| Coding | >Ani_SJS100_1|g1450.t1 ATGGCGCCCACCCAGACGGTGCAGCATCACCACCGATCCACAACCAAATCCGCCAATAAACCATACAAGTCTCGC CATGCCTCCAAGAGTGCGCTGAAGGATAAGGCCAAGGGCAAGGTTGAAAGACAAGAGCGGGGCACCCGCAAGACC CCTCACCAGCAGCTCAAATCCAAACTCGATCGCCGGAACCAGGCTCGCCAGAAGCAGCAATTGAAGCATCAGGAG AAGGCTCAGTCTGTCAGCATTTTCTCAGGTCAGAACGGTGCCCCCCGCCATGTGGCCGTTGTGCCGCTTTCCGTT GATATCGATGTGGCTGCCATCATCCGGGCCTTGAACGAGAGTGTCGATGTTTCCGCGGAGATTTCCCCAGACTCT GCCACCCGGGTTCGTGTCGATCGCTTCCGCCAGAGCCTGCAGTACATTCCGGCGAAATATGACTTGATGAACGCT TTGGATGTGTGCCGGATGGCCGATTTTGTGGTCCTGGCCCTCTCCGCCCAGGTCGAAGTGGAGGAACAAGGAGAG CTGTTGCTGCGGTCCATTGAGGGTCAGGGTATCTCGAACGTTATTGCCATGGTTCAGGGTCTTGACCAAATCAAC CCGGCCAAGAAGCGCCCGCAGGTGGCAGCTTCTCTCAAGTCTTTTGCGAACCACTTTTTCCCGTCCGTTGAAAAG GTCCTCTCCGTGGACTCTCGCCAGGAGTGCTCCAACGCCATCCGTTCCCTCTGCACAGCTACACCCAAGGGTATC CGCTGGCGTGACGAGCGCAGCTGGATGTTCATCGAAAACGTTGAGTGGCCGGAGACCAATGCCGAGGAGGTCGAC GATTTTGTCGTTACTGGTGTTGTCCGCGGTAAAGGCCTGAAGGCGGACCGTCTGGTTCACATCCCTGGATGGGGT GACTTCCAGATTGGTTCGATCACAGCAGCACCACTTGCTGCCGCCCGCGGGAAGCGTGATGATGCTATGAATGTC GATGAGACCGAGGCTCCGCAGCTGTTGGATGGACCCTCTGCAGATTGCGATGATTTGGCCACTGTGGCACCAGAG GAGATTGAGATGGAGGACGACGACTTCCCTGTTGAGGAAGAGCGCAAGGGTGTCCTCCTGGACGACCACCACTAC TTCTCCGATGACGAATCTCACATCCCTCCGAAGCCCAAGAGGCTACCAAAGGGTACCTCGGAGTACCAATCCGCT TGGTTCTTGGACGATGTGTCCGACTCCGGCTCTGACCTTGAAGACGAGGAGGATGTTGAAGAGATGGAGATGGAC ACCGCGGGAGCGCCCGAAGACGGTGTCTTCCCCGATAACAGGGATGCCATGACGGAGGCTGGCCCATCGGAGTAT CCCCAGTCAGAGATGTTCGTCGACCCGTCACCAGAAGACGAGGCCAAAGACTTGGAGGAATACCGTGCGAGCCGC AGAAAGGAAGCCAATGAAGATCTGGAGTTCCCTGACGAAATCGAGCTTCACCCGAACGTTCTCGCTCGGGAGCGT CTGGCCCGCTTCAGAGGTCTGAAGAGCTTCAAGACCAGCCCCTGGGAGACGTCAGAAGACCGTGCCTACGAGCCG GAAGACTGGCGCCGCCTGCTCCAATTCGCGGACTACAAGGGATCCAGGAACAAGTTCCTCCGCGAGGCTCTCGTC GGAGGTGTCACCCCTGGTGTGCGCGTTGATGTGCACCTCAAGGCCGTGCCAGCAACCCTCCGCAGCCGGCCTCAG CCCACATCTCTCTTCTCTCTACTCCGTCATGAGCACAAGCACACCGTTGTCAACATCAACATGCACTTGAACTCC AGCGTCGAGGAGCCCCTGAAGTCGAAGGAGCAGCTCGTCGTCCAGTGCGGTCCTCGCCGTCTGGTCGTCAACCCC ATCTTCTCCGCCGGCGACAACACCCCCAACAACGTGCACAAGTTCGACCGCTTCCTCCACCCAGGCCGCAGCGCC GTCGCCTCCTGGATTGGTCCTTTGACCTGGGGCGCCGTGCCTGTCCTCGTCTTCAAGAACAAGTCCAACCAGGAC CCCGAGATTATGGACTCCGCCGAGGACGACTCCCTCAACAACTTCGACAACCTCGAACTCATCGGAAACGGCACC ATCGTGGCCCCCGACCAGTCCCGCGTCGTTGCCAAGCGCGCCATCCTCACCGGTCACCCATACAAGATCCACAAG CGCGTCGTCACCGTCCGTTACATGTTCTTCAACGCCGAGGACATCCAGTGGTTCAAGGCCCTCCAGCTCTGGACC AGACGCGGCCGCAGCGGTTATATCAAGGAATCCCTCGGTACGCACGGTTATTTCAAGGCTACCTTCGACGCCAAG ATCAACCCCCAGGACTCTATCGGTATCAGTCTGTACAAGCGCGTCTTCCCTCGCAAGGCTCGTGCTCTGGAGGAT GTGGTCTATTAA |
| Transcript | >Ani_SJS100_1|g1450.t1 ATGGCGCCCACCCAGACGGTGCAGCATCACCACCGATCCACAACCAAATCCGCCAATAAACCATACAAGTCTCGC CATGCCTCCAAGAGTGCGCTGAAGGATAAGGCCAAGGGCAAGGTTGAAAGACAAGAGCGGGGCACCCGCAAGACC CCTCACCAGCAGCTCAAATCCAAACTCGATCGCCGGAACCAGGCTCGCCAGAAGCAGCAATTGAAGCATCAGGAG AAGGCTCAGTCTGTCAGCATTTTCTCAGGTCAGAACGGTGCCCCCCGCCATGTGGCCGTTGTGCCGCTTTCCGTT GATATCGATGTGGCTGCCATCATCCGGGCCTTGAACGAGAGTGTCGATGTTTCCGCGGAGATTTCCCCAGACTCT GCCACCCGGGTTCGTGTCGATCGCTTCCGCCAGAGCCTGCAGTACATTCCGGCGAAATATGACTTGATGAACGCT TTGGATGTGTGCCGGATGGCCGATTTTGTGGTCCTGGCCCTCTCCGCCCAGGTCGAAGTGGAGGAACAAGGAGAG CTGTTGCTGCGGTCCATTGAGGGTCAGGGTATCTCGAACGTTATTGCCATGGTTCAGGGTCTTGACCAAATCAAC CCGGCCAAGAAGCGCCCGCAGGTGGCAGCTTCTCTCAAGTCTTTTGCGAACCACTTTTTCCCGTCCGTTGAAAAG GTCCTCTCCGTGGACTCTCGCCAGGAGTGCTCCAACGCCATCCGTTCCCTCTGCACAGCTACACCCAAGGGTATC CGCTGGCGTGACGAGCGCAGCTGGATGTTCATCGAAAACGTTGAGTGGCCGGAGACCAATGCCGAGGAGGTCGAC GATTTTGTCGTTACTGGTGTTGTCCGCGGTAAAGGCCTGAAGGCGGACCGTCTGGTTCACATCCCTGGATGGGGT GACTTCCAGATTGGTTCGATCACAGCAGCACCACTTGCTGCCGCCCGCGGGAAGCGTGATGATGCTATGAATGTC GATGAGACCGAGGCTCCGCAGCTGTTGGATGGACCCTCTGCAGATTGCGATGATTTGGCCACTGTGGCACCAGAG GAGATTGAGATGGAGGACGACGACTTCCCTGTTGAGGAAGAGCGCAAGGGTGTCCTCCTGGACGACCACCACTAC TTCTCCGATGACGAATCTCACATCCCTCCGAAGCCCAAGAGGCTACCAAAGGGTACCTCGGAGTACCAATCCGCT TGGTTCTTGGACGATGTGTCCGACTCCGGCTCTGACCTTGAAGACGAGGAGGATGTTGAAGAGATGGAGATGGAC ACCGCGGGAGCGCCCGAAGACGGTGTCTTCCCCGATAACAGGGATGCCATGACGGAGGCTGGCCCATCGGAGTAT CCCCAGTCAGAGATGTTCGTCGACCCGTCACCAGAAGACGAGGCCAAAGACTTGGAGGAATACCGTGCGAGCCGC AGAAAGGAAGCCAATGAAGATCTGGAGTTCCCTGACGAAATCGAGCTTCACCCGAACGTTCTCGCTCGGGAGCGT CTGGCCCGCTTCAGAGGTCTGAAGAGCTTCAAGACCAGCCCCTGGGAGACGTCAGAAGACCGTGCCTACGAGCCG GAAGACTGGCGCCGCCTGCTCCAATTCGCGGACTACAAGGGATCCAGGAACAAGTTCCTCCGCGAGGCTCTCGTC GGAGGTGTCACCCCTGGTGTGCGCGTTGATGTGCACCTCAAGGCCGTGCCAGCAACCCTCCGCAGCCGGCCTCAG CCCACATCTCTCTTCTCTCTACTCCGTCATGAGCACAAGCACACCGTTGTCAACATCAACATGCACTTGAACTCC AGCGTCGAGGAGCCCCTGAAGTCGAAGGAGCAGCTCGTCGTCCAGTGCGGTCCTCGCCGTCTGGTCGTCAACCCC ATCTTCTCCGCCGGCGACAACACCCCCAACAACGTGCACAAGTTCGACCGCTTCCTCCACCCAGGCCGCAGCGCC GTCGCCTCCTGGATTGGTCCTTTGACCTGGGGCGCCGTGCCTGTCCTCGTCTTCAAGAACAAGTCCAACCAGGAC CCCGAGATTATGGACTCCGCCGAGGACGACTCCCTCAACAACTTCGACAACCTCGAACTCATCGGAAACGGCACC ATCGTGGCCCCCGACCAGTCCCGCGTCGTTGCCAAGCGCGCCATCCTCACCGGTCACCCATACAAGATCCACAAG CGCGTCGTCACCGTCCGTTACATGTTCTTCAACGCCGAGGACATCCAGTGGTTCAAGGCCCTCCAGCTCTGGACC AGACGCGGCCGCAGCGGTTATATCAAGGAATCCCTCGGTACGCACGGTTATTTCAAGGCTACCTTCGACGCCAAG ATCAACCCCCAGGACTCTATCGGTATCAGTCTGTACAAGCGCGTCTTCCCTCGCAAGGCTCGTGCTCTGGAGGAT GTGGTCTATTAA |
| Gene | >Ani_SJS100_1|g1450.t1 ATGGCGCCCACCCAGACGGTGCAGCATCACCACCGATCCACAACCAAATCCGCCAATAAACCATACAAGTCTCGC CATGCCTCCAAGAGTGCGCTGAAGGATAAGGCCAAGGGTATGTGCACCAGAGAATATTACACTGTGTCTGTTATC TTGAAATAGCATCATAAACTGACATACATGCAGGCAAGGTTGAAAGACAAGAGCGGGGCACCCGCAAGACCCCTC ACCAGCAGCTCAAATCCAAACTCGATCGCCGGAACCAGGCTCGCCAGAAGCAGCAATTGAAGCATCAGGAGAAGG CTCAGTCTGTCAGCATTTTCTCAGGTCAGAACGGTGCCCCCCGCCATGTGGCCGTTGTGCCGCTTTCCGTTGATA TCGATGTGGCTGCCATCATCCGGGCCTTGAACGAGAGTGTCGATGTTTCCGCGGAGATTTCCCCAGACTCTGCCA CCCGGGTTCGTGTCGATCGCTTCCGCCAGAGCCTGCAGTACATTCCGGCGAAATATGACTTGATGAACGCTTTGG ATGTGTGCCGGATGGCCGATTTTGTGGTCCTGGCCCTCTCCGCCCAGGTCGAAGTGGAGGAACAAGGAGAGCTGT TGCTGCGGTCCATTGAGGGTCAGGGTATCTCGAACGTTATTGCCATGGTTCAGGTAGGTTCAGGTTTCCTGTACA TGGGGTTGAAACCTTTTCTTACTGACTGGAACTTGCGTAGGGTCTTGACCAAATCAACCCGGCCAAGAAGCGCCC GCAGGTGGCAGCTTCTCTCAAGTCTTTTGCGAACCACTTTTTCCCGTCCGTTGAAAAGGTCCTCTCCGTGGACTC TCGCCAGGAGTGCTCCAACGCCATCCGTTCCCTCTGCACAGCTACACCCAAGGGTATCCGCTGGCGTGACGAGCG CAGCTGGATGTTCATCGAAAACGTTGAGTGGCCGGAGACCAATGCCGAGGAGGTCGACGATTTTGTCGTTACTGG TGTTGTCCGCGGTAAAGGCCTGAAGGCGGACCGTCTGGTTCACATCCCTGGATGGGGTGACTTCCAGATTGGTTC GATCACAGCAGCACCACTTGCTGCCGCCCGCGGGAAGCGTGATGATGCTATGAATGTCGATGAGACCGAGGCTCC GCAGCTGTTGGATGGACCCTCTGCAGATTGCGATGATTTGGCCACTGTGGCACCAGAGGAGATTGAGATGGAGGA CGACGACTTCCCTGTTGAGGAAGAGCGCAAGGGTGTCCTCCTGGACGACCACCACTACTTCTCCGATGACGAATC TCACATCCCTCCGAAGCCCAAGAGGCTACCAAAGGGTACCTCGGAGTACCAATCCGCTTGGTTCTTGGACGATGT GTCCGACTCCGGCTCTGACCTTGAAGACGAGGAGGATGTTGAAGAGATGGAGATGGACACCGCGGGAGCGCCCGA AGACGGTGTCTTCCCCGATAACAGGGATGCCATGACGGAGGCTGGCCCATCGGAGTATCCCCAGTCAGAGATGTT CGTCGACCCGTCACCAGAAGACGAGGCCAAAGACTTGGAGGAATACCGTGCGAGCCGCAGAAAGGAAGCCAATGA AGATCTGGAGTTCCCTGACGAAATCGAGCTTCACCCGAACGTTCTCGCTCGGGAGCGTCTGGCCCGCTTCAGAGG TCTGAAGAGCTTCAAGACCAGCCCCTGGGAGACGTCAGAAGACCGTGCCTACGAGCCGGAAGACTGGCGCCGCCT GCTCCAATTCGCGGACTACAAGGGATCCAGGAACAAGTTCCTCCGCGAGGCTCTCGTCGGAGGTGTCACCCCTGG TGTGCGCGTTGATGTGCACCTCAAGGCCGTGCCAGCAACCCTCCGCAGCCGGCCTCAGCCCACATCTCTCTTCTC TCTACTCCGTCATGAGCACAAGCACACCGTTGTCAACATCAACATGCACTTGAACTCCAGCGTCGAGGAGCCCCT GAAGTCGAAGGAGCAGCTCGTCGTCCAGTGCGGTCCTCGCCGTCTGGTCGTCAACCCCATCTTCTCCGCCGGCGA CAACACCCCCAACAACGTGCACAAGTTCGACCGCTTCCTCCACCCAGGCCGCAGCGCCGTCGCCTCCTGGATTGG TCCTTTGACCTGGGGCGCCGTGCCTGTCCTCGTCTTCAAGAACAAGTCCAACCAGGACCCCGAGATTATGGACTC CGCCGAGGACGACTCCCTCAACAACTTCGACAACCTCGAACTCATCGGAAACGGCACCATCGTGGCCCCCGACCA GTCCCGCGTCGTTGCCAAGCGCGCCATCCTCACCGGTCACCCATACAAGATCCACAAGCGCGTCGTCACCGTCCG TTACATGTTCTTCAACGCCGAGGACATCCAGTGGTTCAAGGCCCTCCAGCTCTGGACCAGACGCGGCCGCAGCGG TTATATCAAGGAATCCCTCGGTACGCACGGTTATTTCAAGGCTACCTTCGACGCCAAGATCAACCCCCAGGACTC TATCGGTATCAGTCTGTACAAGCGCGTCTTCCCTCGCAAGGCTCGTGCTCTGGAGGATGTGGTCTATTAA |