© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ani_SJS100_1|g1372.t1 |
| Gene name | |
| Location | scaffold_005:75638..77466 |
| Strand | - |
| Gene length (bp) | 1828 |
| Transcript length (bp) | 1683 |
| Coding sequence length (bp) | 1683 |
| Protein length (aa) | 561 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00860 | Xan_ur_permease | Permease family | 6.1E-55 | 81 | 502 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0055085 | transmembrane transport | Yes |
| GO:0016020 | membrane | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0110165 | cellular anatomical entity | No |
| GO:0008150 | biological_process | No |
| GO:0005575 | cellular_component | No |
| GO:0051234 | establishment of localization | No |
| GO:0051179 | localization | No |
| GO:0009987 | cellular process | No |
| GO:0005215 | transporter activity | No |
| GO:0006810 | transport | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 70 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 88 | 110 | 22 |
| 2 | 117 | 134 | 17 |
| 3 | 144 | 166 | 22 |
| 4 | 216 | 238 | 22 |
| 5 | 277 | 295 | 18 |
| 6 | 302 | 321 | 19 |
| 7 | 336 | 358 | 22 |
| 8 | 430 | 452 | 22 |
| 9 | 457 | 479 | 22 |
| 10 | 488 | 507 | 19 |
| 11 | 527 | 549 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g1372.t1 MESKSSPISTEESPSPTTGEVLHASSKWGYWKHYLTSRDGWIGDYDYMYLVTPNIYPLNKRYQGVEPPFYGLNDE VPILLTILLGLQHALTMIGSVVSPPLALASGAFYLNSEQSQYLVSAAFITTGIATALQVTRVHLFKTPLWIGTGL LSVVGPTFDVIAVAMNYADTRYNNGSCPTDENGSRLPCPEAWGAVLGTCLCTVWIQILMSLVPPKVLNRIFPKVV TGSLLLLVGVYLISSGMENWGGSSNCDGGTGYYALCPNVDAPRPLPWGDPKLIGLGFSVFATIIFVEFVGSPLMK SASVILGLAVGCAISGATGYWSRDEIDAAPVGTFLWVHTFPLSVDGALVLPLLIMFVCEAVSCMPDILATAEISR VDIEGREFHSRIQGGILCDGLGSLISALGTGLPMVSQAGNNGVISLTGCASRRAGWCASAFLLLMGIFGKFGAVF GSMPPSVLGGMQVFLYSTIVVAGVRVLGLVEFTRRNRFILTASLGIGMMDIVSPSWFSSVLAYSGPNVHLQGFEQ GINLIVETPFIIAAVVGVVLNLVLKEDEKVDTVLP* |
| Coding | >Ani_SJS100_1|g1372.t1 ATGGAGTCCAAGTCTAGCCCTATCTCCACTGAAGAGTCCCCGTCCCCCACAACTGGGGAAGTTCTGCACGCTTCA TCCAAGTGGGGATACTGGAAGCACTATCTTACTAGCAGGGATGGCTGGATTGGTGACTATGACTACATGTACCTG GTTACCCCCAATATCTACCCCCTCAACAAGCGCTATCAAGGTGTCGAACCGCCTTTCTATGGCCTCAACGATGAG GTCCCCATTTTACTAACTATACTCCTCGGCCTCCAACATGCCTTGACCATGATCGGCTCCGTGGTCTCTCCTCCT TTGGCCCTCGCAAGCGGCGCCTTCTACCTAAACTCTGAACAGTCGCAATATCTCGTCTCGGCAGCATTCATCACC ACCGGCATTGCCACAGCTCTGCAGGTAACAAGGGTGCACCTGTTCAAAACACCATTATGGATTGGTACAGGACTG CTCTCTGTAGTCGGTCCCACATTCGATGTCATCGCCGTTGCCATGAACTACGCCGACACCAGATACAACAACGGC TCGTGCCCCACTGACGAGAATGGCTCTCGTCTCCCCTGCCCTGAAGCATGGGGCGCAGTCCTGGGCACCTGCTTA TGTACGGTCTGGATCCAGATTCTCATGTCACTGGTGCCGCCAAAGGTGCTGAATCGCATCTTTCCCAAAGTAGTC ACAGGAAGCCTTCTGCTCTTGGTTGGCGTATACCTTATCTCGAGTGGCATGGAGAACTGGGGAGGAAGTTCAAAC TGTGATGGCGGGACAGGATATTATGCCCTTTGTCCTAATGTGGATGCTCCGAGACCACTGCCATGGGGCGACCCC AAACTGATCGGCCTCGGCTTCAGCGTTTTCGCGACCATCATCTTCGTCGAATTCGTCGGCTCCCCACTAATGAAA TCCGCCTCAGTCATCCTAGGATTAGCAGTGGGATGCGCCATCTCCGGGGCAACAGGCTACTGGTCTCGCGACGAG ATTGACGCTGCGCCAGTGGGTACCTTTTTATGGGTGCATACCTTCCCACTGTCTGTTGACGGGGCACTCGTTCTC CCGCTGCTTATCATGTTCGTCTGCGAGGCTGTCAGCTGCATGCCGGATATTCTGGCCACAGCGGAGATTTCCCGT GTTGATATCGAGGGACGGGAGTTCCACAGCCGTATCCAGGGTGGGATCTTATGTGATGGACTGGGGAGTCTGATT AGTGCGCTGGGCACTGGGCTGCCGATGGTTAGTCAGGCGGGCAATAATGGGGTTATTTCCTTGACTGGGTGTGCT AGTCGACGAGCAGGATGGTGCGCTTCCGCATTCCTCCTACTAATGGGCATTTTTGGCAAATTCGGCGCTGTCTTT GGATCCATGCCTCCTTCTGTCCTCGGAGGAATGCAGGTATTTTTGTACAGCACGATTGTGGTGGCTGGTGTGCGC GTCCTCGGTTTGGTGGAATTCACTCGACGCAATAGATTCATTCTTACTGCGTCGCTGGGAATCGGTATGATGGAT ATTGTCTCCCCCAGCTGGTTCAGTTCCGTGTTGGCGTATAGCGGGCCAAATGTGCATTTGCAGGGGTTTGAGCAG GGGATCAATCTGATTGTTGAGACGCCGTTTATCATTGCTGCAGTGGTGGGTGTGGTGCTAAATCTGGTGTTGAAG GAGGATGAGAAGGTGGATACGGTGCTGCCATAG |
| Transcript | >Ani_SJS100_1|g1372.t1 ATGGAGTCCAAGTCTAGCCCTATCTCCACTGAAGAGTCCCCGTCCCCCACAACTGGGGAAGTTCTGCACGCTTCA TCCAAGTGGGGATACTGGAAGCACTATCTTACTAGCAGGGATGGCTGGATTGGTGACTATGACTACATGTACCTG GTTACCCCCAATATCTACCCCCTCAACAAGCGCTATCAAGGTGTCGAACCGCCTTTCTATGGCCTCAACGATGAG GTCCCCATTTTACTAACTATACTCCTCGGCCTCCAACATGCCTTGACCATGATCGGCTCCGTGGTCTCTCCTCCT TTGGCCCTCGCAAGCGGCGCCTTCTACCTAAACTCTGAACAGTCGCAATATCTCGTCTCGGCAGCATTCATCACC ACCGGCATTGCCACAGCTCTGCAGGTAACAAGGGTGCACCTGTTCAAAACACCATTATGGATTGGTACAGGACTG CTCTCTGTAGTCGGTCCCACATTCGATGTCATCGCCGTTGCCATGAACTACGCCGACACCAGATACAACAACGGC TCGTGCCCCACTGACGAGAATGGCTCTCGTCTCCCCTGCCCTGAAGCATGGGGCGCAGTCCTGGGCACCTGCTTA TGTACGGTCTGGATCCAGATTCTCATGTCACTGGTGCCGCCAAAGGTGCTGAATCGCATCTTTCCCAAAGTAGTC ACAGGAAGCCTTCTGCTCTTGGTTGGCGTATACCTTATCTCGAGTGGCATGGAGAACTGGGGAGGAAGTTCAAAC TGTGATGGCGGGACAGGATATTATGCCCTTTGTCCTAATGTGGATGCTCCGAGACCACTGCCATGGGGCGACCCC AAACTGATCGGCCTCGGCTTCAGCGTTTTCGCGACCATCATCTTCGTCGAATTCGTCGGCTCCCCACTAATGAAA TCCGCCTCAGTCATCCTAGGATTAGCAGTGGGATGCGCCATCTCCGGGGCAACAGGCTACTGGTCTCGCGACGAG ATTGACGCTGCGCCAGTGGGTACCTTTTTATGGGTGCATACCTTCCCACTGTCTGTTGACGGGGCACTCGTTCTC CCGCTGCTTATCATGTTCGTCTGCGAGGCTGTCAGCTGCATGCCGGATATTCTGGCCACAGCGGAGATTTCCCGT GTTGATATCGAGGGACGGGAGTTCCACAGCCGTATCCAGGGTGGGATCTTATGTGATGGACTGGGGAGTCTGATT AGTGCGCTGGGCACTGGGCTGCCGATGGTTAGTCAGGCGGGCAATAATGGGGTTATTTCCTTGACTGGGTGTGCT AGTCGACGAGCAGGATGGTGCGCTTCCGCATTCCTCCTACTAATGGGCATTTTTGGCAAATTCGGCGCTGTCTTT GGATCCATGCCTCCTTCTGTCCTCGGAGGAATGCAGGTATTTTTGTACAGCACGATTGTGGTGGCTGGTGTGCGC GTCCTCGGTTTGGTGGAATTCACTCGACGCAATAGATTCATTCTTACTGCGTCGCTGGGAATCGGTATGATGGAT ATTGTCTCCCCCAGCTGGTTCAGTTCCGTGTTGGCGTATAGCGGGCCAAATGTGCATTTGCAGGGGTTTGAGCAG GGGATCAATCTGATTGTTGAGACGCCGTTTATCATTGCTGCAGTGGTGGGTGTGGTGCTAAATCTGGTGTTGAAG GAGGATGAGAAGGTGGATACGGTGCTGCCATAG |
| Gene | >Ani_SJS100_1|g1372.t1 ATGGAGTCCAAGTCTAGCCCTATCTCCACTGAAGAGTCCCCGTCCCCCACAACTGGGGAAGTTCTGCACGCTTCA TCCAAGTGGGGATACTGGAAGCACTATCTTACTAGCAGGGATGGCTGGATTGGTGACTATGTAGGTGTTTACTTA CTCTTCTCGGTAGCCCTATTAATGTATACAGGACTACATGTACCTGGTTACCCCCAATATCTACCCCCTCAACAA GCGCTATCAAGGTGTCGAACCGCCTTTCTATGGCCTCAACGATGAGGTCCCCATTTTACTAACTATACTCCTCGG CCTCCAACATGCCTTGACCATGATCGGCTCCGTGGTCTCTCCTCCTTTGGCCCTCGCAAGCGGCGCCTTCTACCT AAACTCTGAACAGTCGCAATATCTCGTCTCGGCAGCATTCATCACCACCGGCATTGCCACAGCTCTGCAGGTAAC AAGGGTGCACCTGTTCAAAACACCATTATGGATTGGTACAGGACTGCTCTCTGTAGTCGGTCCCACATTCGATGT CATCGCCGTTGCCATGAACTACGCCGACACCAGATACAACAACGGCTCGTGCCCCACTGACGAGAATGGCTCTCG TCTCCCCTGCCCTGAAGCATGGGGCGCAGTCCTGGGCACCTGCTTATGTACGGTCTGGATCCAGATTCTCATGTC ACTGGTGCCGCCAAAGGTGCTGAATCGCATCTTTCCCAAAGTAGTCACAGGAAGCCTTCTGCTCTTGGTTGGCGT ATACCTTATCTCGAGTGGCATGGAGAACTGGGGAGGAAGTTCAAACTGTGATGGCGGGACAGGATATTATGCCCT TTGTCCTAATGTGGATGCTCCGAGACCACTGCCATGGTATGTCCCTACCCACCCATGTCATGTCTAATGCTAACA ATCCCAGGGGCGACCCCAAACTGATCGGCCTCGGCTTCAGCGTTTTCGCGACCATCATCTTCGTCGAATTCGTCG GCTCCCCACTAATGAAATCCGCCTCAGTCATCCTAGGATTAGCAGTGGGATGCGCCATCTCCGGGGCAACAGGCT ACTGGTCTCGCGACGAGATTGACGCTGCGCCAGTGGGTACCTTTTTATGGGTGCATACCTTCCCACTGTCTGTTG ACGGGGCACTCGTTCTCCCGCTGCTTATCATGTTCGTCTGCGAGGCTGTCAGCTGCATGCCGGATATTCTGGCCA CAGCGGAGATTTCCCGTGTTGATATCGAGGGACGGGAGTTCCACAGCCGTATCCAGGGTGGGATCTTATGTGATG GACTGGGGAGTCTGATTAGTGCGCTGGGCACTGGGCTGCCGATGGTTAGTCAGGCGGGCAATAATGGGGTTATTT CCTTGACTGGGTGTGCTGTACGTATTCCCCCCTGCTTTACCTTTTTCAAATGCTGATTATATGACTATAGAGTCG ACGAGCAGGATGGTGCGCTTCCGCATTCCTCCTACTAATGGGCATTTTTGGCAAATTCGGCGCTGTCTTTGGATC CATGCCTCCTTCTGTCCTCGGAGGAATGCAGGTATTTTTGTACAGCACGATTGTGGTGGCTGGTGTGCGCGTCCT CGGTTTGGTGGAATTCACTCGACGCAATAGATTCATTCTTACTGCGTCGCTGGGAATCGGTATGATGGATATTGT CTCCCCCAGCTGGTTCAGTTCCGTGTTGGCGTATAGCGGGCCAAATGTGCATTTGCAGGGGTTTGAGCAGGGGAT CAATCTGATTGTTGAGACGCCGTTTATCATTGCTGCAGTGGTGGGTGTGGTGCTAAATCTGGTGTTGAAGGAGGA TGAGAAGGTGGATACGGTGCTGCCATAG |