© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ani_SJS100_1|g1323.t1 |
| Gene name | |
| Location | scaffold_004:754232..755870 |
| Strand | - |
| Gene length (bp) | 1638 |
| Transcript length (bp) | 1578 |
| Coding sequence length (bp) | 1578 |
| Protein length (aa) | 526 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00083 | Sugar_tr | Sugar (and other) transporter | 7.8E-95 | 21 | 476 |
| PF07690 | MFS_1 | Major Facilitator Superfamily | 1.4E-11 | 38 | 222 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0055085 | transmembrane transport | Yes |
| GO:0016021 | integral component of membrane | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0110165 | cellular anatomical entity | No |
| GO:0008150 | biological_process | No |
| GO:0005575 | cellular_component | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0051234 | establishment of localization | No |
| GO:0051179 | localization | No |
| GO:0009987 | cellular process | No |
| GO:0005215 | transporter activity | No |
| GO:0006810 | transport | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 15 | 37 | 22 |
| 2 | 99 | 118 | 19 |
| 3 | 123 | 145 | 22 |
| 4 | 157 | 179 | 22 |
| 5 | 189 | 211 | 22 |
| 6 | 278 | 300 | 22 |
| 7 | 315 | 337 | 22 |
| 8 | 344 | 366 | 22 |
| 9 | 376 | 398 | 22 |
| 10 | 418 | 435 | 17 |
| 11 | 439 | 461 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g1323.t1 MAGPTLPVVGTRLQIALVLFIVAPSFILFGYNQAVLGSLLSLQSWVSVFPAIDTINTSGAQKSHNSTSQGACNAS FQMGCLIGALSLSLYSDKLGRRKTVFIGAAITVLGQALQVSATTLVQLVVGRVILGFAIGQISGTVPVWLSECAS PKYRGQLGICTGIFISTGYTLCNWIDLGFSYLPPSTGKWRAPLSIPFLFSAMLLVSAFTFPESPRWLISRGRVEE ATASLCRYRGKDAHDEMIMGEIAHIQLALEGSGTMSVLDIFDRKDKTRLLLRFWLCMGLNFFQQACGGNLISVYS STIFQNYLHMTPTMSKVLASCVLSWKTLCCLFTFWTIDNWGRRLSFMVSGAGMSICMAVLAVTTGLGKITHAMAI AYVAFMFVFNFFYPIGFMGGNFLYTAEIAPVRLRAAMSSLATANHWLWNLVVVLVTPVAIDTIGCWYYVIYALIS ATIPVCVYFFYPETRHRSLEMLDRVFVDAPSIWRIVPMARGLPLGEVGTAESGDTLREEKKAEDIDGNVEMREYV * |
| Coding | >Ani_SJS100_1|g1323.t1 ATGGCAGGCCCTACTCTCCCTGTTGTCGGTACCCGGCTCCAGATCGCTCTGGTACTTTTTATCGTTGCCCCTTCG TTCATTCTCTTCGGATACAATCAAGCGGTCCTGGGCAGTTTACTCAGCCTCCAAAGTTGGGTCTCTGTATTTCCA GCAATCGACACCATAAACACCTCGGGGGCACAAAAGTCTCATAACTCTACATCCCAAGGCGCCTGCAATGCCTCG TTTCAGATGGGATGTCTGATAGGTGCCCTGTCTCTCTCCCTTTATAGCGACAAACTCGGACGCCGTAAGACAGTC TTCATCGGAGCTGCCATTACCGTCCTCGGTCAGGCTCTACAGGTCTCTGCAACCACATTGGTTCAGTTGGTCGTT GGTCGAGTTATCCTAGGATTCGCTATCGGCCAAATCAGCGGCACCGTGCCTGTCTGGCTCTCGGAGTGTGCCTCT CCCAAGTACCGCGGACAGCTCGGTATCTGTACGGGTATTTTCATCAGCACGGGCTACACATTGTGCAACTGGATT GATTTGGGATTCAGCTATCTACCCCCTTCTACTGGAAAATGGAGAGCTCCGCTCTCTATACCCTTTCTCTTCTCA GCAATGTTACTGGTTTCTGCTTTCACGTTTCCGGAGTCGCCTCGTTGGCTGATCTCTAGAGGAAGGGTCGAAGAA GCTACTGCAAGTCTCTGTCGGTATCGAGGAAAGGATGCGCATGATGAGATGATTATGGGCGAGATAGCCCATATT CAGCTTGCTCTAGAGGGCAGTGGGACCATGTCCGTCCTGGATATTTTCGATCGCAAGGACAAGACGCGTCTGTTG TTGCGATTTTGGCTCTGCATGGGGTTAAACTTTTTCCAACAGGCCTGCGGAGGCAACCTCATATCCGTCTATAGT TCCACCATTTTCCAAAATTACCTACACATGACACCCACCATGTCTAAAGTCCTGGCGTCCTGTGTACTATCATGG AAAACGCTCTGCTGTCTATTTACGTTTTGGACTATCGACAACTGGGGCCGCCGTCTATCCTTCATGGTAAGCGGA GCAGGGATGTCCATCTGCATGGCCGTGCTAGCGGTCACCACCGGCTTGGGCAAAATCACGCATGCGATGGCAATA GCATACGTTGCCTTCATGTTCGTCTTCAACTTCTTCTACCCAATCGGCTTCATGGGTGGCAACTTCCTGTACACG GCTGAGATTGCGCCTGTGCGTCTGCGAGCGGCCATGTCCTCCCTCGCGACTGCTAATCACTGGCTATGGAATTTG GTGGTTGTTCTGGTTACGCCAGTTGCTATAGATACGATTGGATGCTGGTACTATGTGATCTATGCGCTTATATCT GCGACTATCCCGGTCTGCGTGTACTTCTTCTATCCGGAGACGAGGCACCGTAGTTTGGAGATGCTTGATCGGGTG TTTGTGGATGCCCCTTCTATCTGGCGGATTGTGCCGATGGCCAGGGGGTTGCCGCTCGGAGAAGTCGGCACAGCA GAGAGTGGAGATACACTGCGCGAGGAAAAGAAGGCAGAGGATATAGATGGTAATGTTGAGATGCGGGAGTATGTC TAG |
| Transcript | >Ani_SJS100_1|g1323.t1 ATGGCAGGCCCTACTCTCCCTGTTGTCGGTACCCGGCTCCAGATCGCTCTGGTACTTTTTATCGTTGCCCCTTCG TTCATTCTCTTCGGATACAATCAAGCGGTCCTGGGCAGTTTACTCAGCCTCCAAAGTTGGGTCTCTGTATTTCCA GCAATCGACACCATAAACACCTCGGGGGCACAAAAGTCTCATAACTCTACATCCCAAGGCGCCTGCAATGCCTCG TTTCAGATGGGATGTCTGATAGGTGCCCTGTCTCTCTCCCTTTATAGCGACAAACTCGGACGCCGTAAGACAGTC TTCATCGGAGCTGCCATTACCGTCCTCGGTCAGGCTCTACAGGTCTCTGCAACCACATTGGTTCAGTTGGTCGTT GGTCGAGTTATCCTAGGATTCGCTATCGGCCAAATCAGCGGCACCGTGCCTGTCTGGCTCTCGGAGTGTGCCTCT CCCAAGTACCGCGGACAGCTCGGTATCTGTACGGGTATTTTCATCAGCACGGGCTACACATTGTGCAACTGGATT GATTTGGGATTCAGCTATCTACCCCCTTCTACTGGAAAATGGAGAGCTCCGCTCTCTATACCCTTTCTCTTCTCA GCAATGTTACTGGTTTCTGCTTTCACGTTTCCGGAGTCGCCTCGTTGGCTGATCTCTAGAGGAAGGGTCGAAGAA GCTACTGCAAGTCTCTGTCGGTATCGAGGAAAGGATGCGCATGATGAGATGATTATGGGCGAGATAGCCCATATT CAGCTTGCTCTAGAGGGCAGTGGGACCATGTCCGTCCTGGATATTTTCGATCGCAAGGACAAGACGCGTCTGTTG TTGCGATTTTGGCTCTGCATGGGGTTAAACTTTTTCCAACAGGCCTGCGGAGGCAACCTCATATCCGTCTATAGT TCCACCATTTTCCAAAATTACCTACACATGACACCCACCATGTCTAAAGTCCTGGCGTCCTGTGTACTATCATGG AAAACGCTCTGCTGTCTATTTACGTTTTGGACTATCGACAACTGGGGCCGCCGTCTATCCTTCATGGTAAGCGGA GCAGGGATGTCCATCTGCATGGCCGTGCTAGCGGTCACCACCGGCTTGGGCAAAATCACGCATGCGATGGCAATA GCATACGTTGCCTTCATGTTCGTCTTCAACTTCTTCTACCCAATCGGCTTCATGGGTGGCAACTTCCTGTACACG GCTGAGATTGCGCCTGTGCGTCTGCGAGCGGCCATGTCCTCCCTCGCGACTGCTAATCACTGGCTATGGAATTTG GTGGTTGTTCTGGTTACGCCAGTTGCTATAGATACGATTGGATGCTGGTACTATGTGATCTATGCGCTTATATCT GCGACTATCCCGGTCTGCGTGTACTTCTTCTATCCGGAGACGAGGCACCGTAGTTTGGAGATGCTTGATCGGGTG TTTGTGGATGCCCCTTCTATCTGGCGGATTGTGCCGATGGCCAGGGGGTTGCCGCTCGGAGAAGTCGGCACAGCA GAGAGTGGAGATACACTGCGCGAGGAAAAGAAGGCAGAGGATATAGATGGTAATGTTGAGATGCGGGAGTATGTC TAG |
| Gene | >Ani_SJS100_1|g1323.t1 ATGGCAGGCCCTACTCTCCCTGTTGTCGGTACCCGGCTCCAGATCGCTCTGGTACTTTTTATCGTTGCCCCTTCG TTCATTCTCTTCGGATACAATCAAGCGGTCCTGGGCAGTTTACTCAGCCTCCAAAGTTGGGTCTCTGTATTTCCA GCAATCGACACCATAAACACCTCGGGGGCACAAAAGTCTCATAACTCTACATCCCAAGGCGCCTGCAATGCCTCG TTTCAGATGGGATGTCTGATAGGTGCCCTGTCTCTCTCCCTTTATAGCGACAAACTCGGACGCCGTAAGACAGTC TTCATCGGAGCTGCCATTACCGTCCTCGGTCAGGCTCTACAGGTCTCTGCAACCACATTGGTTCAGTTGGTCGTT GGTCGAGTTATCCTAGGATTCGCTATCGGCCAAATCAGCGGCACCGTGCCTGTCTGGCTCTCGGAGTGTGCCTCT CCCAAGTACCGCGGACAGCTCGGTATCTGTACGGGTATTTTCATCAGCACGGGCTACACATTGTGCAACTGGATT GATTTGGGATTCAGCTATCTACCCCCTTCTACTGGAAAATGGAGAGCTCCGCTCTCTATACCCTTTCTCTTCTCA GCAATGTTACTGGTTTCTGCTTTCACGTTTCCGGAGTCGCCTCGTTGGCTGATCTCTAGAGGAAGGGTCGAAGAA GCTACTGCAAGTCTCTGTCGGTATCGAGGAAAGGATGCGCATGATGAGATGATTATGGGCGAGATAGCCCATATT CAGCTTGCTCTAGAGGGCAGTGGGACCATGTCCGTCCTGGATATTTTCGATCGCAAGGACAAGACGCGTCTGTTG TTGCGATTTTGGCTCTGCATGGGGTTAAACTTTTTCCAACAGGTGAGTATCGCGGCTCCTATAGCACTTGGCTCT CCAAATGTACCACCGCTAATCCATTAGGCCTGCGGAGGCAACCTCATATCCGTCTATAGTTCCACCATTTTCCAA AATTACCTACACATGACACCCACCATGTCTAAAGTCCTGGCGTCCTGTGTACTATCATGGAAAACGCTCTGCTGT CTATTTACGTTTTGGACTATCGACAACTGGGGCCGCCGTCTATCCTTCATGGTAAGCGGAGCAGGGATGTCCATC TGCATGGCCGTGCTAGCGGTCACCACCGGCTTGGGCAAAATCACGCATGCGATGGCAATAGCATACGTTGCCTTC ATGTTCGTCTTCAACTTCTTCTACCCAATCGGCTTCATGGGTGGCAACTTCCTGTACACGGCTGAGATTGCGCCT GTGCGTCTGCGAGCGGCCATGTCCTCCCTCGCGACTGCTAATCACTGGCTATGGAATTTGGTGGTTGTTCTGGTT ACGCCAGTTGCTATAGATACGATTGGATGCTGGTACTATGTGATCTATGCGCTTATATCTGCGACTATCCCGGTC TGCGTGTACTTCTTCTATCCGGAGACGAGGCACCGTAGTTTGGAGATGCTTGATCGGGTGTTTGTGGATGCCCCT TCTATCTGGCGGATTGTGCCGATGGCCAGGGGGTTGCCGCTCGGAGAAGTCGGCACAGCAGAGAGTGGAGATACA CTGCGCGAGGAAAAGAAGGCAGAGGATATAGATGGTAATGTTGAGATGCGGGAGTATGTCTAG |