© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ani_SJS100_1|g1294.t1 |
| Gene name | |
| Location | scaffold_004:662715..664193 |
| Strand | - |
| Gene length (bp) | 1478 |
| Transcript length (bp) | 1125 |
| Coding sequence length (bp) | 1125 |
| Protein length (aa) | 375 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04321 | RmlD_sub_bind | RmlD substrate binding domain | 9.2E-57 | 64 | 357 |
| PF01370 | Epimerase | NAD dependent epimerase/dehydratase family | 5.8E-21 | 65 | 248 |
| PF07993 | NAD_binding_4 | Male sterility protein | 3.5E-08 | 110 | 231 |
| PF02719 | Polysacc_synt_2 | Polysaccharide biosynthesis protein | 3.3E-07 | 105 | 173 |
| PF01073 | 3Beta_HSD | 3-beta hydroxysteroid dehydrogenase/isomerase family | 1.3E-08 | 102 | 244 |
| PF16363 | GDP_Man_Dehyd | GDP-mannose 4,6 dehydratase | 9.0E-08 | 101 | 218 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006694 | steroid biosynthetic process | Yes |
| GO:0016616 | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | Yes |
| GO:0003854 | 3-beta-hydroxy-delta5-steroid dehydrogenase activity | Yes |
| GO:1901576 | organic substance biosynthetic process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0033764 | steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | No |
| GO:0044238 | primary metabolic process | No |
| GO:0008202 | steroid metabolic process | No |
| GO:0008610 | lipid biosynthetic process | No |
| GO:0003674 | molecular_function | No |
| GO:0008152 | metabolic process | No |
| GO:0006629 | lipid metabolic process | No |
| GO:0016491 | oxidoreductase activity | No |
| GO:0003824 | catalytic activity | No |
| GO:0009058 | biosynthetic process | No |
| GO:0016229 | steroid dehydrogenase activity | No |
| GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors | No |
| GO:0008150 | biological_process | No |
| GO:1901362 | organic cyclic compound biosynthetic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 53 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g1294.t1 MQPHKSEVHSSPSSVAHRDRPSSPTHSSEKKLDKTSLLRVIIPFLLFSSTMSSTETQFGNMSTTVLVTGATGLLG RQVFNTFKHSGCLVVGQGYSRAIPPTIQKADLEKEEDIKNLLNEAKPQIVIHCAANRSPDLCDQNPDQARRVNVD ATRTLAEETARRGALLVYISTDYVFPGKEGEAPYEADAQTNPPNLYGQFKRDGEVAVLEATKDTGLGIVLRVPVL YGTAKENSESAVNTLVDAVYKAQDESAGVKMDDWALRYPTNTEDVARVCRDIVIKYVKERQRIQELPKILQFSSE DRMTKYEICEKLADVLGLSLVGMVRNKQGNDPNASVQRPYDTHLSTKALKELGIDLRTVDFVSWWRKHLGAYKH* |
| Coding | >Ani_SJS100_1|g1294.t1 ATGCAGCCTCACAAATCAGAAGTACATTCATCTCCAAGTTCAGTTGCTCACCGTGACAGACCCTCATCTCCCACC CACTCTTCCGAGAAGAAATTAGACAAAACATCTCTTCTGCGCGTCATTATCCCTTTTCTTTTGTTCTCTTCCACC ATGTCCTCTACTGAAACGCAATTCGGAAACATGTCGACTACTGTTCTTGTCACTGGTGCTACCGGCCTTCTGGGT CGACAGGTATTCAATACCTTCAAGCACTCCGGCTGTCTGGTCGTTGGTCAAGGCTATTCTAGAGCCATACCTCCC ACGATACAGAAGGCCGATTTGGAAAAGGAGGAGGACATCAAGAATTTGTTGAACGAAGCGAAACCTCAGATAGTC ATCCATTGTGCCGCAAACCGTTCCCCCGACCTGTGCGACCAGAACCCGGACCAGGCGCGTCGGGTCAACGTTGAC GCCACCCGCACCCTCGCAGAAGAGACCGCGCGCCGTGGTGCCCTGCTGGTTTACATTTCGACCGACTATGTTTTC CCTGGTAAGGAGGGGGAGGCTCCCTACGAGGCCGACGCTCAGACCAACCCGCCGAATCTGTACGGGCAGTTCAAG CGGGATGGCGAGGTGGCTGTGCTGGAGGCCACCAAGGACACCGGGCTAGGGATCGTGCTGCGGGTGCCCGTGTTG TATGGGACTGCCAAGGAGAACTCGGAGAGCGCCGTCAACACCCTAGTGGATGCGGTGTACAAGGCCCAGGACGAG AGTGCGGGCGTGAAGATGGACGACTGGGCTCTGCGCTATCCCACCAACACCGAAGATGTTGCACGGGTGTGCCGT GACATTGTGATCAAGTATGTCAAGGAGCGGCAGCGCATCCAGGAGCTTCCCAAGATCCTGCAGTTCTCGTCGGAG GATCGGATGACCAAGTACGAGATCTGTGAGAAGCTGGCGGATGTGCTCGGACTGTCCCTGGTTGGCATGGTGCGC AACAAGCAAGGGAATGATCCAAACGCGAGTGTGCAGCGGCCCTACGACACTCACCTGTCGACAAAAGCGCTGAAG GAGCTCGGAATTGATCTTCGGACGGTCGACTTTGTATCGTGGTGGCGGAAACACTTGGGAGCGTACAAGCATTAA |
| Transcript | >Ani_SJS100_1|g1294.t1 ATGCAGCCTCACAAATCAGAAGTACATTCATCTCCAAGTTCAGTTGCTCACCGTGACAGACCCTCATCTCCCACC CACTCTTCCGAGAAGAAATTAGACAAAACATCTCTTCTGCGCGTCATTATCCCTTTTCTTTTGTTCTCTTCCACC ATGTCCTCTACTGAAACGCAATTCGGAAACATGTCGACTACTGTTCTTGTCACTGGTGCTACCGGCCTTCTGGGT CGACAGGTATTCAATACCTTCAAGCACTCCGGCTGTCTGGTCGTTGGTCAAGGCTATTCTAGAGCCATACCTCCC ACGATACAGAAGGCCGATTTGGAAAAGGAGGAGGACATCAAGAATTTGTTGAACGAAGCGAAACCTCAGATAGTC ATCCATTGTGCCGCAAACCGTTCCCCCGACCTGTGCGACCAGAACCCGGACCAGGCGCGTCGGGTCAACGTTGAC GCCACCCGCACCCTCGCAGAAGAGACCGCGCGCCGTGGTGCCCTGCTGGTTTACATTTCGACCGACTATGTTTTC CCTGGTAAGGAGGGGGAGGCTCCCTACGAGGCCGACGCTCAGACCAACCCGCCGAATCTGTACGGGCAGTTCAAG CGGGATGGCGAGGTGGCTGTGCTGGAGGCCACCAAGGACACCGGGCTAGGGATCGTGCTGCGGGTGCCCGTGTTG TATGGGACTGCCAAGGAGAACTCGGAGAGCGCCGTCAACACCCTAGTGGATGCGGTGTACAAGGCCCAGGACGAG AGTGCGGGCGTGAAGATGGACGACTGGGCTCTGCGCTATCCCACCAACACCGAAGATGTTGCACGGGTGTGCCGT GACATTGTGATCAAGTATGTCAAGGAGCGGCAGCGCATCCAGGAGCTTCCCAAGATCCTGCAGTTCTCGTCGGAG GATCGGATGACCAAGTACGAGATCTGTGAGAAGCTGGCGGATGTGCTCGGACTGTCCCTGGTTGGCATGGTGCGC AACAAGCAAGGGAATGATCCAAACGCGAGTGTGCAGCGGCCCTACGACACTCACCTGTCGACAAAAGCGCTGAAG GAGCTCGGAATTGATCTTCGGACGGTCGACTTTGTATCGTGGTGGCGGAAACACTTGGGAGCGTACAAGCATTAA |
| Gene | >Ani_SJS100_1|g1294.t1 ATGCAGCCTCACAAATCAGAAGTACATTCATCTCCAAGTTCAGTTGGTGATCAATTGTGCCTGGCCCATTACGCT GTGTCTCGACCCATCCATCCCGATCAGCTCACCGTGACAGACCCTCATCTCCCACCCACTCTTCCGAGAAGAAAT TAGACAGTAAGAGACCAACCCGTCGTTACGTCATGAAGATGCCCCGCAGTTGACCAGCTACCAGAAACATCTCTT CTGCGCGTCATTATCCCTTTTCTTTTGTTCTCTTCCACCATGTCCTCTACTGAAACGCAATTCGGAAACATGTCG ACTACTGTTCTTGTCACTGGTGCTACCGGCCTTCTGGGTCGACAGGTATTCAATACCTTCAAGCACTCCGGCTGT CTGGTCGTTGGTCAAGGCTATTCTAGAGCCATACCTCCCACGATACAGAAGGCCGATTTGGAAAAGGAGGAGGAC ATCAAGAATTTGTTGAACGAAGCGAAGTAAATCAATTCCCGACTACGGCTTCCGCCTGCATCTTACACTGAATAC CCCCCCATCTCACACCCGCGTTGTACACGAATTGAATCTGACTGATGTCCGTGCCCCTGCAGACCTCAGATAGTC ATCCATTGTACGCCACCTCCTGTTGGAAATGCAGCCAATCTGCATCGCCTTGCACGCTGACCGTTCCGCTCTAGG TGCCGCAAACCGTTCCCCCGACCTGTGCGACCAGAACCCGGACCAGGCGCGTCGGGTCAACGTTGACGCCACCCG CACCCTCGCAGAAGAGACCGCGCGCCGTGGTGCCCTGCTGGTTTACATTTCGACCGACTATGTTTTCCCTGGTAA GGAGGGGGAGGCTCCCTACGAGGCCGACGCTCAGACCAACCCGCCGAATCTGTACGGGCAGTTCAAGCGGGATGG CGAGGTGGCTGTGCTGGAGGCCACCAAGGACACCGGGCTAGGGATCGTGCTGCGGGTGCCCGTGTTGTATGGGAC TGCCAAGGAGAACTCGGAGAGCGCCGTCAACACCCTAGTGGATGCGGTGTACAAGGCCCAGGACGAGAGTGCGGG CGTGAAGATGGACGACTGGGCTCTGCGCTATCCCACCAACACCGAAGATGTTGCACGGGTGTGCCGTGACATTGT GATCAAGTATGTCAAGGAGCGGCAGCGCATCCAGGAGCTTCCCAAGATCCTGCAGTTCTCGTCGGAGGATCGGAT GACCAAGTACGAGATCTGTGAGAAGCTGGCGGATGTGCTCGGACTGTCCCTGGTTGGCATGGTGCGCAACAAGCA AGGGAATGATCCAAACGCGAGTGTGCAGCGGCCCTACGACACTCACCTGTCGACAAAAGCGCTGAAGGAGCTCGG AATTGATCTTCGGACGGTCGACTTTGTATCGTGGTGGTAAGTTGTTCTTTCCCTTATCAGGATGGTGCATAGTAG AGAGGCTAACGCTCAGACGCAGGCGGAAACACTTGGGAGCGTACAAGCATTAA |