© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ani_SJS100_1|g1277.t1 |
| Gene name | |
| Location | scaffold_004:608483..609854 |
| Strand | + |
| Gene length (bp) | 1371 |
| Transcript length (bp) | 1200 |
| Coding sequence length (bp) | 1200 |
| Protein length (aa) | 400 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00270 | DEAD | DEAD/DEAH box helicase | 2.5E-41 | 50 | 212 |
| PF00271 | Helicase_C | Helicase conserved C-terminal domain | 5.8E-33 | 251 | 359 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005524 | ATP binding | Yes |
| GO:0003676 | nucleic acid binding | Yes |
| GO:0032553 | ribonucleotide binding | No |
| GO:0003674 | molecular_function | No |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0036094 | small molecule binding | No |
| GO:0043167 | ion binding | No |
| GO:0032559 | adenyl ribonucleotide binding | No |
| GO:0030554 | adenyl nucleotide binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0000166 | nucleotide binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:0032555 | purine ribonucleotide binding | No |
| GO:0035639 | purine ribonucleoside triphosphate binding | No |
| GO:0043168 | anion binding | No |
| GO:0017076 | purine nucleotide binding | No |
| GO:0097367 | carbohydrate derivative binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 69 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g1277.t1 MADGIDRRADDRMEFNTSKEVTVAPTFEDMHLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGK TATFSISILQVIDTVVRESQALVLSPTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIRKLDYGQHVVSGT PGRVADMIRRRHLRTRHIKMLVLDEADELLNRGFREQIYDVYRYLPPATQVVVVSATLPYDVLDMTTKFMTDPVR VLVKRDELTLEGIKQYFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQ KERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTSDDVRI LRDIELYYSTQIDEMPMNVADLLS* |
| Coding | >Ani_SJS100_1|g1277.t1 ATGGCGGACGGAATTGACAGACGCGCTGATGACCGCATGGAGTTCAATACCTCGAAGGAGGTCACTGTTGCTCCT ACCTTCGAGGACATGCACTTGAAGGAGAGCCTTCTCCGTGGTATCTACGCTTATGGCTACGAATCTCCGTCTGCA GTCCAGTCCCGTGCCATTGTCCAGATCTGCAAAGGTCGCGATACCATTGCTCAGGCGCAATCCGGTACTGGTAAG ACCGCTACATTCTCGATTAGTATCCTCCAGGTCATCGATACCGTCGTCCGCGAATCTCAGGCCCTCGTCCTTTCC CCCACTCGTGAACTTGCCACCCAGATTCAGTCCGTTATCATGGCCCTCGGTGATTACATGAACGTTCAGTGCCAT GCTTGTATCGGAGGCACAAATATTGGAGAGGATATCAGGAAGCTTGACTACGGCCAGCATGTCGTTTCGGGCACA CCGGGCAGAGTCGCCGATATGATTCGCAGACGTCATCTGCGCACCCGTCACATCAAGATGCTGGTTCTTGATGAA GCCGATGAACTACTCAACCGTGGATTCCGTGAACAGATTTACGATGTCTACCGCTACCTTCCTCCTGCCACCCAA GTCGTTGTCGTTTCCGCTACTCTCCCCTATGATGTGCTTGACATGACCACCAAGTTCATGACAGACCCCGTGCGT GTCCTGGTCAAGCGTGACGAGTTGACCCTCGAAGGCATCAAGCAGTACTTCATCGCGGTGGAGAAGGAAGAGTGG AAGTTCGATACCCTTTGCGACCTTTACGATACCTTGACTATCACCCAGGCGGTCATCTTCTGCAACACCCGTCGC AAGGTCGACTGGCTTACCGACAAGATGCGCGAAGCCAACTTTACTGTGTCCAGTATGCACGGTGAAATGCCCCAG AAGGAGCGTGACAGCATTATGCAGGATTTCCGCCAGGGTAATTCTCGTGTGCTTATCTCCACCGATGTCTGGGCT CGTGGTATCGATGTGCAGCAGGTGTCCCTCGTCATCAACTACGATCTGCCCACTAACCGTGAAAACTACATCCAC CGTATCGGTCGTAGTGGTCGTTTCGGTCGCAAGGGTGTTGCCATCAACTTCGTCACCAGCGATGACGTGCGCATC CTCCGCGACATTGAACTCTACTACTCCACTCAGATTGATGAGATGCCCATGAATGTTGCCGATCTTCTGTCATAA |
| Transcript | >Ani_SJS100_1|g1277.t1 ATGGCGGACGGAATTGACAGACGCGCTGATGACCGCATGGAGTTCAATACCTCGAAGGAGGTCACTGTTGCTCCT ACCTTCGAGGACATGCACTTGAAGGAGAGCCTTCTCCGTGGTATCTACGCTTATGGCTACGAATCTCCGTCTGCA GTCCAGTCCCGTGCCATTGTCCAGATCTGCAAAGGTCGCGATACCATTGCTCAGGCGCAATCCGGTACTGGTAAG ACCGCTACATTCTCGATTAGTATCCTCCAGGTCATCGATACCGTCGTCCGCGAATCTCAGGCCCTCGTCCTTTCC CCCACTCGTGAACTTGCCACCCAGATTCAGTCCGTTATCATGGCCCTCGGTGATTACATGAACGTTCAGTGCCAT GCTTGTATCGGAGGCACAAATATTGGAGAGGATATCAGGAAGCTTGACTACGGCCAGCATGTCGTTTCGGGCACA CCGGGCAGAGTCGCCGATATGATTCGCAGACGTCATCTGCGCACCCGTCACATCAAGATGCTGGTTCTTGATGAA GCCGATGAACTACTCAACCGTGGATTCCGTGAACAGATTTACGATGTCTACCGCTACCTTCCTCCTGCCACCCAA GTCGTTGTCGTTTCCGCTACTCTCCCCTATGATGTGCTTGACATGACCACCAAGTTCATGACAGACCCCGTGCGT GTCCTGGTCAAGCGTGACGAGTTGACCCTCGAAGGCATCAAGCAGTACTTCATCGCGGTGGAGAAGGAAGAGTGG AAGTTCGATACCCTTTGCGACCTTTACGATACCTTGACTATCACCCAGGCGGTCATCTTCTGCAACACCCGTCGC AAGGTCGACTGGCTTACCGACAAGATGCGCGAAGCCAACTTTACTGTGTCCAGTATGCACGGTGAAATGCCCCAG AAGGAGCGTGACAGCATTATGCAGGATTTCCGCCAGGGTAATTCTCGTGTGCTTATCTCCACCGATGTCTGGGCT CGTGGTATCGATGTGCAGCAGGTGTCCCTCGTCATCAACTACGATCTGCCCACTAACCGTGAAAACTACATCCAC CGTATCGGTCGTAGTGGTCGTTTCGGTCGCAAGGGTGTTGCCATCAACTTCGTCACCAGCGATGACGTGCGCATC CTCCGCGACATTGAACTCTACTACTCCACTCAGATTGATGAGATGCCCATGAATGTTGCCGATCTTCTGTCATAA |
| Gene | >Ani_SJS100_1|g1277.t1 ATGGCGGACGGAATTGACAGACGCGCTGATGGTAGGACCTCCAAAAGTCCCCAACAGTTATTCAGGTCGGTATAC TGACTGCGCAAAACTAGACCGCATGGAGTTCAATACCTCGAAGGAGGTCACTGTTGCTCCTACCTTCGAGGACAT GCACTTGAAGGAGAGCCTTCTCCGTGGTATCTACGCTTATGGCTACGAATCTCCGTCTGCAGTCCAGTCCCGTGC CATTGTCCAGATCTGCAAAGGTCGCGATACCATTGCTCAGGCGCAATCCGGTACTGGTAAGACCGCTACATTCTC GATTAGTATCCTCCAGGTCATCGATACCGTCGTCCGCGAATCTCAGGGTATGTAATATGCGCTCAATTGCATTTC GTTGGTGGTAATCTCACATCTGATAGCCCTCGTCCTTTCCCCCACTCGTGAACTTGCCACCCAGATTCAGTCCGT TATCATGGCCCTCGGTGATTACATGAACGTTCAGTGCCATGCTTGTATCGGAGGCACAAATATTGGAGAGGATAT CAGGAAGCTTGACTACGGCCAGCATGTCGTTTCGGGCACACCGGGCAGAGTCGCCGATATGATTCGCAGACGTCA TCTGCGCACCCGTCACATCAAGATGCTGGTTCTTGATGAAGCCGATGAACTACTCAACCGTGGATTCCGTGAACA GATTTACGATGTCTACCGCTACCTTCCTCCTGCCACCCAAGTCGTTGTCGTTTCCGCTACTCTCCCCTATGATGT GCTTGACATGACCACCAAGTTCATGACAGACCCCGTGCGTGTCCTGGTCAAGCGTGACGAGTTGACCCTCGAAGG CATCAAGCAGTACTTCATCGCGGTGGAGAAGGAAGAGTGGAAGTTCGATACCCTTTGCGACCTTTACGATACCTT GACTATCACCCAGGCGGTCATCTTCTGCAACACCCGTCGCAAGGTCGACTGGCTTACCGACAAGATGCGCGAAGC CAACTTTACTGTGTCCAGTATGCACGGTGAAATGCCCCAGAAGGAGCGTGACAGCATTATGCAGGATTTCCGCCA GGGTAATTCTCGTGTGCTTATCTCCACCGATGTCTGGGCTCGTGGTATCGATGTGCAGCAGGTGTCCCTCGTCAT CAACTACGATCTGCCCACTAACCGTGAAAACTACATCCACCGTATCGGTCGTAGTGGTCGTTTCGGTCGCAAGGG TGTTGCCATCAACTTCGTCACCAGCGATGACGTGCGCATCCTCCGCGACATTGAACTCTACTACTCCACTCAGAT TGATGAGATGCCCATGAATGGTATGTTGACACCATCTATATCACCAAGACCAGATATAACTAACCCATTTTTCCA GTTGCCGATCTTCTGTCATAA |