Fungal Genomics

at Utrecht University

General Properties

Protein IDAni_SJS100_1|g1246.t1
Gene name
Locationscaffold_004:494431..494886
Strand-
Gene length (bp)455
Transcript length (bp)363
Coding sequence length (bp)363
Protein length (aa) 121

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01370 Epimerase NAD dependent epimerase/dehydratase family 1.5E-05 25 99
PF07993 NAD_binding_4 Male sterility protein 2.7E-04 17 93

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 27 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ani_SJS100_1|g1246.t1
MYGDCIEIHSVNKGTLMESLWNETSSVTNNPYHYSKVIAEREAWKIHAAQDRWDLVVLNPGLVLGPSMTPESVSG
SLFMIENMFRGNNRMGVPELEWGDIQLVGIGEYGPFCAPRSEGLA*
Coding >Ani_SJS100_1|g1246.t1
ATGTACGGCGATTGCATCGAGATCCATTCCGTCAATAAAGGCACTCTGATGGAATCTCTATGGAACGAAACCAGC
AGCGTCACCAACAACCCATACCACTATTCCAAGGTAATAGCAGAGCGCGAAGCCTGGAAGATTCACGCCGCCCAG
GATCGCTGGGACCTCGTTGTCCTGAACCCAGGGTTAGTTCTCGGACCATCAATGACGCCCGAGTCCGTCTCAGGC
AGCCTCTTCATGATCGAAAACATGTTCCGTGGGAATAACCGCATGGGTGTTCCGGAACTGGAGTGGGGAGACATT
CAGCTTGTTGGAATTGGCGAATATGGCCCGTTCTGTGCACCGAGATCCGAGGGTCTTGCCTAA
Transcript >Ani_SJS100_1|g1246.t1
ATGTACGGCGATTGCATCGAGATCCATTCCGTCAATAAAGGCACTCTGATGGAATCTCTATGGAACGAAACCAGC
AGCGTCACCAACAACCCATACCACTATTCCAAGGTAATAGCAGAGCGCGAAGCCTGGAAGATTCACGCCGCCCAG
GATCGCTGGGACCTCGTTGTCCTGAACCCAGGGTTAGTTCTCGGACCATCAATGACGCCCGAGTCCGTCTCAGGC
AGCCTCTTCATGATCGAAAACATGTTCCGTGGGAATAACCGCATGGGTGTTCCGGAACTGGAGTGGGGAGACATT
CAGCTTGTTGGAATTGGCGAATATGGCCCGTTCTGTGCACCGAGATCCGAGGGTCTTGCCTAA
Gene >Ani_SJS100_1|g1246.t1
ATGTACGGCGATTGCATCGAGATCCATTCCGTCAATAAAGGCACTCTGATGGAATCTCTATGGAACGAAACCAGC
AGCGTCACCAACAACCCATACCACTATTCCAAGGTAATAGCAGAGCGCGAAGCCTGGAAGATTCACGCCGCCCAG
GATCGCTGGGACCTCGTTGTCCTGAACCCAGGGTTAGTTCTCGGACCATCAATGACGCCCGAGTCCGTCTCAGGC
AGCCTCTTCATGATCGAAAACATGTTCCGTGGGAATAACCGCATGGGTGTTCCGGAACTGTATTATCCTGTGGTT
GATGTGCGGGATGTGGCGGAGGCGCATGTCAGGGCTGGGAATATGCCTAACTCTAATGGGCGATATATTATCGCA
GGGAGTGGGGAGACATTCAGCTTGTTGGAATTGGCGAATATGGCCCGTTCTGTGCACCGAGATCCGAGGGTCTTG
CCTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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