© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS100_1|g1236.t1 |
| Gene name | |
| Location | scaffold_004:457167..458314 |
| Strand | - |
| Gene length (bp) | 1147 |
| Transcript length (bp) | 1029 |
| Coding sequence length (bp) | 1029 |
| Protein length (aa) | 343 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01151 | ELO | GNS1/SUR4 family | 3.8E-63 | 48 | 288 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0009922 | fatty acid elongase activity | Yes |
| GO:0016021 | integral component of membrane | Yes |
| GO:0003824 | catalytic activity | No |
| GO:0016740 | transferase activity | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0016747 | acyltransferase activity, transferring groups other than amino-acyl groups | No |
| GO:0016746 | acyltransferase activity | No |
| GO:0005575 | cellular_component | No |
| GO:0004312 | fatty acid synthase activity | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 34 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 46 | 68 | 22 |
| 2 | 89 | 111 | 22 |
| 3 | 131 | 153 | 22 |
| 4 | 158 | 180 | 22 |
| 5 | 185 | 202 | 17 |
| 6 | 222 | 244 | 22 |
| 7 | 259 | 281 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g1236.t1 MDVLQSLPLPSIDRPFGIHLWPIFDKAFELVVGYPASEFRFEEGVTPMSTFKETAIALVAYYVIIFGGREFMKNR PAFKLNTLFMIHNLYLTLISGTLLALFIEQLLPTVWRHGIFYAICDHDGGWTRPLIVLYYLNYLTKYLELIDTVF LFLKKKPLTFLHTYHHGATALLCYTQLIGLTAVQWVVIDINLLVHVVMYWYYFQSARGIRIWWKEWITRLQIIQF VIDLGFIYFASYTYFSSTYFPWAPNMGKCAGEEFAAFSGMAVISSYLFLFISFYVATYKKAVKAGRPRRNTGKQA VIDMAKFEVSSPNADAKGNAKSNGAAVSTGRANGPVTRSRKA* |
| Coding | >Ani_SJS100_1|g1236.t1 ATGGATGTCCTGCAAAGTCTGCCTTTGCCGTCAATTGACCGGCCGTTTGGTATCCACCTATGGCCTATCTTCGAC AAGGCCTTCGAGCTGGTGGTGGGCTATCCTGCCAGCGAGTTTCGCTTTGAAGAAGGCGTGACGCCCATGTCTACT TTCAAGGAAACCGCCATTGCGCTCGTTGCCTACTATGTCATCATCTTTGGTGGCCGTGAGTTCATGAAGAACAGA CCTGCCTTCAAGCTCAACACGCTTTTCATGATCCACAACCTTTACCTCACCCTGATCAGCGGCACTCTCTTGGCT CTCTTCATTGAGCAGCTTCTCCCTACTGTCTGGAGACATGGTATCTTCTATGCTATCTGTGACCACGACGGTGGA TGGACGCGGCCTCTTATCGTTCTGTACTATCTCAACTATTTGACCAAGTACCTCGAACTCATTGACACCGTCTTC CTGTTCCTCAAGAAGAAGCCTCTTACCTTCCTTCATACCTACCACCACGGTGCCACCGCGCTTCTCTGCTATACC CAGCTTATTGGCTTGACTGCGGTTCAGTGGGTTGTCATTGATATCAACCTCCTGGTGCACGTCGTCATGTACTGG TACTACTTCCAGAGTGCCCGTGGTATCCGTATCTGGTGGAAGGAGTGGATCACCCGTCTCCAGATTATTCAGTTC GTCATCGATCTCGGCTTCATCTACTTCGCTTCTTACACCTACTTCTCCTCTACTTACTTCCCCTGGGCTCCCAAC ATGGGCAAGTGCGCCGGCGAGGAGTTTGCCGCTTTCTCCGGCATGGCTGTCATCAGCTCTTACCTCTTCCTCTTC ATCTCCTTCTACGTCGCTACCTACAAGAAGGCTGTCAAGGCCGGCCGTCCCCGCCGCAACACTGGCAAGCAGGCT GTTATTGACATGGCCAAGTTCGAGGTCTCTTCGCCGAACGCTGACGCCAAGGGCAACGCCAAGTCCAACGGAGCT GCTGTGTCGACCGGCCGTGCCAATGGCCCGGTTACCCGCTCCCGCAAGGCTTAA |
| Transcript | >Ani_SJS100_1|g1236.t1 ATGGATGTCCTGCAAAGTCTGCCTTTGCCGTCAATTGACCGGCCGTTTGGTATCCACCTATGGCCTATCTTCGAC AAGGCCTTCGAGCTGGTGGTGGGCTATCCTGCCAGCGAGTTTCGCTTTGAAGAAGGCGTGACGCCCATGTCTACT TTCAAGGAAACCGCCATTGCGCTCGTTGCCTACTATGTCATCATCTTTGGTGGCCGTGAGTTCATGAAGAACAGA CCTGCCTTCAAGCTCAACACGCTTTTCATGATCCACAACCTTTACCTCACCCTGATCAGCGGCACTCTCTTGGCT CTCTTCATTGAGCAGCTTCTCCCTACTGTCTGGAGACATGGTATCTTCTATGCTATCTGTGACCACGACGGTGGA TGGACGCGGCCTCTTATCGTTCTGTACTATCTCAACTATTTGACCAAGTACCTCGAACTCATTGACACCGTCTTC CTGTTCCTCAAGAAGAAGCCTCTTACCTTCCTTCATACCTACCACCACGGTGCCACCGCGCTTCTCTGCTATACC CAGCTTATTGGCTTGACTGCGGTTCAGTGGGTTGTCATTGATATCAACCTCCTGGTGCACGTCGTCATGTACTGG TACTACTTCCAGAGTGCCCGTGGTATCCGTATCTGGTGGAAGGAGTGGATCACCCGTCTCCAGATTATTCAGTTC GTCATCGATCTCGGCTTCATCTACTTCGCTTCTTACACCTACTTCTCCTCTACTTACTTCCCCTGGGCTCCCAAC ATGGGCAAGTGCGCCGGCGAGGAGTTTGCCGCTTTCTCCGGCATGGCTGTCATCAGCTCTTACCTCTTCCTCTTC ATCTCCTTCTACGTCGCTACCTACAAGAAGGCTGTCAAGGCCGGCCGTCCCCGCCGCAACACTGGCAAGCAGGCT GTTATTGACATGGCCAAGTTCGAGGTCTCTTCGCCGAACGCTGACGCCAAGGGCAACGCCAAGTCCAACGGAGCT GCTGTGTCGACCGGCCGTGCCAATGGCCCGGTTACCCGCTCCCGCAAGGCTTAA |
| Gene | >Ani_SJS100_1|g1236.t1 ATGGATGTCCTGCAAAGTCTGCCTTTGCCGTCAATTGACCGGCCGTTTGGTATCCACCTATGGCCTATCTTCGAC AAGGCCTTCGAGCTGGTGGTGGGCTATCCTGCCAGCGAGTTTCGCTTTGAAGAAGGCGTGACGCCCATGTCTACT TTCAAGGAAACCGCCATTGCGCTCGTTGCCTACTATGTCATCATCTTTGGTGGCCGTGAGTTCATGAAGAACAGA CCTGCCTTCAAGCTCAACACGCTTTTCATGATCCACAACCTTTACCTCACCCTGATCAGCGGCACTCTCTTGGCT CTCTTCATTGAGCAGCTTCTCCCTACTGTCTGGAGACATGGTATCTTCTATGCTATCTGTGACCACGACGGTGGA TGGACGCGGCCTCTTATCGTTCTGTACTATGTGAGTACTCACGGCGCGGGACAAGTTTCGCTACGATCGGATCCG GTATGCTAACGATATCGCGAATAGCTCAACTATTTGACCAAGTACCTCGAACTCATTGACACCGTCTTCCTGTTC CTCAAGAAGAAGCCTCTTACCTTCCTTCATACCTACCACCACGGTGCCACCGCGCTTCTCTGCTATACCCAGCTT ATTGGCTTGACTGCGGTTCAGTGGGTTGTCATTGATATCAACCTCCTGGTGCACGTCGTCATGTACTGGTACTAC TTCCAGAGTGCCCGTGGTATCCGTATCTGGTGGAAGGAGTGGATCACCCGTCTCCAGATTATTCAGTTCGTCATC GATCTCGGTTAGTAACCATTTCCAGCTCCGCATCGCTTCAACTAACCAGGTGACAGGCTTCATCTACTTCGCTTC TTACACCTACTTCTCCTCTACTTACTTCCCCTGGGCTCCCAACATGGGCAAGTGCGCCGGCGAGGAGTTTGCCGC TTTCTCCGGCATGGCTGTCATCAGCTCTTACCTCTTCCTCTTCATCTCCTTCTACGTCGCTACCTACAAGAAGGC TGTCAAGGCCGGCCGTCCCCGCCGCAACACTGGCAAGCAGGCTGTTATTGACATGGCCAAGTTCGAGGTCTCTTC GCCGAACGCTGACGCCAAGGGCAACGCCAAGTCCAACGGAGCTGCTGTGTCGACCGGCCGTGCCAATGGCCCGGT TACCCGCTCCCGCAAGGCTTAA |