Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ani_SJS100_1\|g11918.t1
Gene name
Location	scaffold_819:336..1066
Strand	-
Gene length (bp)	730
Transcript length (bp)	666
Coding sequence length (bp)	666
Protein length (aa)	222

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF14529	Exo_endo_phos_2	Endonuclease-reverse transcriptase	6.6E-26	32	163

GO

GO Term	Description	Terminal node
GO:0003824	catalytic activity	Yes
GO:0003674	molecular_function	No

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 11	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ani_SJS100_1\|g11918.t1 MLWINKDVEAEQVPIESPDLTAAVIRLPERLIFMASVYVEGDNASALDDTCNHLLNAITKLRRDTGAVVEILIMG DFNRHDQLWGGDDVSLGRQGEADSIIDLMNEYALSSLLKRGTKTWHGGGYSGDCESTIDLVLASENLTDSVIKCA ILGTEHGSDHCAIETVFDAPWSLPKHQGRLLLKNAPWKEINARIANILAATPAEGTVQQKTDRLIGGGPLI*
Coding	>Ani_SJS100_1\|g11918.t1 ATGCTCTGGATTAATAAAGATGTCGAGGCGGAACAAGTGCCAATAGAGTCCCCGGATCTCACGGCTGCGGTTATT AGGCTTCCCGAGCGACTGATTTTCATGGCATCAGTTTACGTGGAAGGGGACAATGCCTCAGCTTTGGACGACACA TGCAATCATCTACTCAACGCAATCACGAAACTACGGCGAGATACGGGTGCGGTGGTGGAGATTTTGATTATGGGA GACTTCAACCGGCATGACCAACTCTGGGGAGGAGACGACGTGTCTTTGGGAAGACAAGGTGAAGCGGATTCAATC ATCGATCTCATGAACGAATATGCCCTCAGCAGTCTCCTCAAACGAGGCACAAAGACATGGCATGGCGGAGGATAC AGCGGGGACTGCGAGTCGACGATCGACCTGGTCCTGGCCTCGGAAAACCTGACAGACTCAGTGATTAAGTGTGCT ATACTCGGGACGGAGCACGGCTCGGACCACTGCGCTATTGAGACCGTCTTTGATGCGCCCTGGTCGCTCCCAAAG CATCAGGGACGACTTCTGTTGAAAAATGCTCCATGGAAAGAGATCAATGCCAGGATAGCGAACATTCTTGCCGCC ACTCCTGCGGAGGGCACAGTGCAGCAGAAAACCGACCGGCTCATCGGTGGTGGACCGCTGATTTAA
Transcript	>Ani_SJS100_1\|g11918.t1 ATGCTCTGGATTAATAAAGATGTCGAGGCGGAACAAGTGCCAATAGAGTCCCCGGATCTCACGGCTGCGGTTATT AGGCTTCCCGAGCGACTGATTTTCATGGCATCAGTTTACGTGGAAGGGGACAATGCCTCAGCTTTGGACGACACA TGCAATCATCTACTCAACGCAATCACGAAACTACGGCGAGATACGGGTGCGGTGGTGGAGATTTTGATTATGGGA GACTTCAACCGGCATGACCAACTCTGGGGAGGAGACGACGTGTCTTTGGGAAGACAAGGTGAAGCGGATTCAATC ATCGATCTCATGAACGAATATGCCCTCAGCAGTCTCCTCAAACGAGGCACAAAGACATGGCATGGCGGAGGATAC AGCGGGGACTGCGAGTCGACGATCGACCTGGTCCTGGCCTCGGAAAACCTGACAGACTCAGTGATTAAGTGTGCT ATACTCGGGACGGAGCACGGCTCGGACCACTGCGCTATTGAGACCGTCTTTGATGCGCCCTGGTCGCTCCCAAAG CATCAGGGACGACTTCTGTTGAAAAATGCTCCATGGAAAGAGATCAATGCCAGGATAGCGAACATTCTTGCCGCC ACTCCTGCGGAGGGCACAGTGCAGCAGAAAACCGACCGGCTCATCGGTGGTGGACCGCTGATTTAA
Gene	>Ani_SJS100_1\|g11918.t1 ATGCTCTGGATTAATAAAGATGTCGAGGCGGAACAAGTGCCAATAGAGTCCCCGGATCTCACGGCTGCGGTTATT AGGCTTCCCGAGCGACTGATTTTCATGGCATCAGTTTACGTGGAAGGGGACAATGCCTCAGCTTTGGACGACACA TGCAATCATCTACTCAACGCAATCACGAAACTACGGCGAGATACGGGTGCGGTGGTGGAGATTTTGATTATGGGA GACTTCAACCGGCATGACCAACTCTGGGGAGGAGACGACGTGTCTTTGGGAAGACAAGGTGAAGCGGATTCAATC ATCGATCTCATGAACGAATATGCCCTCAGCAGTCTCCTCAAACGAGGCACAAAGACATGGCATGGCGGAGGATAC AGCGGGGACTGCGAGTCGACGATCGACCTGGTCCTGGCCTCGGAAAACCTGACAGACTCAGTGATTAAGTGTGCT ATACTCGGGACGGAGCACGGCTCGGACCACTGCGCTATTGAGACCGTCTTTGATGCGCCCTGGTCGCTCCCAAAG CATCAGGGACGACTTCTGTTGAAAAATGCTCCATGGAAAGAGATCAATGCCAGGATAGCGAACATTCTTGCCGCC ACTCCTGCGGAGGGCACAGTGCAGCAGAAAACCGACCGGCTCATGTCGGCGGTTTCAGAAGCGGTGCATGCGTTA ACACCAAAGTCAAAACCATCACCATACGCGAAGCGGTGGTGGACCGCTGATTTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail