Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ani_SJS100_1\|g11851.t1
Gene name
Location	scaffold_573:1259..2000
Strand	-
Gene length (bp)	741
Transcript length (bp)	741
Coding sequence length (bp)	741
Protein length (aa)	247

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF00505	HMG_box	HMG (high mobility group) box	2.5E-10	87	155

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 58	0.45

Transmembrane Domains

(None)

Transcription Factor Class

Transcription Factor Class (based on PFAM domains)
HMG

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ani_SJS100_1\|g11851.t1 MDRTEADQTNPEPLCQNSRVRRSNRAVAMTRNGQVEHATLKLNLDLPCPLSELANGTPHVPVRDMCAWVDRPVES RHQEALQRHGRIPRPMNSFMLYRLAYSDRAKYWLAHDDHQAISILTGRSWKMESPHIRKQYKTLAVMEKQKHAGA HPKYRFSPSNKKKRLRTARARSQKLVLRSEVSPQVSRSAQPHAWSNLLNNDHVSGPSTEPFFAEEENLLKSIPSN PDSFGPLQSATSVWWQGTTYS*
Coding	>Ani_SJS100_1\|g11851.t1 ATGGATAGGACCGAGGCGGACCAGACAAACCCAGAGCCTTTGTGTCAGAACAGCAGAGTCCGACGGTCGAATCGC GCTGTAGCCATGACAAGGAACGGCCAAGTCGAGCACGCAACGTTGAAGCTCAATCTAGACCTACCATGCCCACTC AGCGAATTGGCCAACGGCACGCCGCACGTCCCGGTTAGAGACATGTGCGCCTGGGTCGACCGCCCGGTCGAGTCA CGCCACCAGGAGGCTCTACAACGGCATGGCAGGATTCCACGTCCGATGAATTCATTCATGCTGTACCGGCTGGCA TACAGTGATCGAGCGAAGTACTGGCTCGCCCACGATGATCATCAGGCCATCTCCATCCTCACCGGACGGAGCTGG AAGATGGAATCCCCCCACATCCGTAAGCAGTACAAGACGCTCGCCGTGATGGAGAAACAAAAGCATGCTGGAGCG CACCCGAAATATCGGTTCTCGCCGTCAAACAAGAAGAAACGATTGCGGACTGCAAGAGCCCGTTCTCAGAAATTG GTGTTGCGTTCAGAGGTGTCCCCCCAAGTCAGCCGAAGCGCTCAGCCTCATGCTTGGTCTAATTTGTTGAACAAT GACCACGTCAGTGGACCCTCCACAGAACCATTCTTTGCAGAAGAGGAAAATCTCCTCAAAAGCATTCCATCGAAT CCAGATAGTTTTGGACCATTGCAAAGTGCCACCTCGGTGTGGTGGCAGGGGACAACCTACTCTTAG
Transcript	>Ani_SJS100_1\|g11851.t1 ATGGATAGGACCGAGGCGGACCAGACAAACCCAGAGCCTTTGTGTCAGAACAGCAGAGTCCGACGGTCGAATCGC GCTGTAGCCATGACAAGGAACGGCCAAGTCGAGCACGCAACGTTGAAGCTCAATCTAGACCTACCATGCCCACTC AGCGAATTGGCCAACGGCACGCCGCACGTCCCGGTTAGAGACATGTGCGCCTGGGTCGACCGCCCGGTCGAGTCA CGCCACCAGGAGGCTCTACAACGGCATGGCAGGATTCCACGTCCGATGAATTCATTCATGCTGTACCGGCTGGCA TACAGTGATCGAGCGAAGTACTGGCTCGCCCACGATGATCATCAGGCCATCTCCATCCTCACCGGACGGAGCTGG AAGATGGAATCCCCCCACATCCGTAAGCAGTACAAGACGCTCGCCGTGATGGAGAAACAAAAGCATGCTGGAGCG CACCCGAAATATCGGTTCTCGCCGTCAAACAAGAAGAAACGATTGCGGACTGCAAGAGCCCGTTCTCAGAAATTG GTGTTGCGTTCAGAGGTGTCCCCCCAAGTCAGCCGAAGCGCTCAGCCTCATGCTTGGTCTAATTTGTTGAACAAT GACCACGTCAGTGGACCCTCCACAGAACCATTCTTTGCAGAAGAGGAAAATCTCCTCAAAAGCATTCCATCGAAT CCAGATAGTTTTGGACCATTGCAAAGTGCCACCTCGGTGTGGTGGCAGGGGACAACCTACTCTTAG
Gene	>Ani_SJS100_1\|g11851.t1 ATGGATAGGACCGAGGCGGACCAGACAAACCCAGAGCCTTTGTGTCAGAACAGCAGAGTCCGACGGTCGAATCGC GCTGTAGCCATGACAAGGAACGGCCAAGTCGAGCACGCAACGTTGAAGCTCAATCTAGACCTACCATGCCCACTC AGCGAATTGGCCAACGGCACGCCGCACGTCCCGGTTAGAGACATGTGCGCCTGGGTCGACCGCCCGGTCGAGTCA CGCCACCAGGAGGCTCTACAACGGCATGGCAGGATTCCACGTCCGATGAATTCATTCATGCTGTACCGGCTGGCA TACAGTGATCGAGCGAAGTACTGGCTCGCCCACGATGATCATCAGGCCATCTCCATCCTCACCGGACGGAGCTGG AAGATGGAATCCCCCCACATCCGTAAGCAGTACAAGACGCTCGCCGTGATGGAGAAACAAAAGCATGCTGGAGCG CACCCGAAATATCGGTTCTCGCCGTCAAACAAGAAGAAACGATTGCGGACTGCAAGAGCCCGTTCTCAGAAATTG GTGTTGCGTTCAGAGGTGTCCCCCCAAGTCAGCCGAAGCGCTCAGCCTCATGCTTGGTCTAATTTGTTGAACAAT GACCACGTCAGTGGACCCTCCACAGAACCATTCTTTGCAGAAGAGGAAAATCTCCTCAAAAGCATTCCATCGAAT CCAGATAGTTTTGGACCATTGCAAAGTGCCACCTCGGTGTGGTGGCAGGGGACAACCTACTCTTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail