Fungal Genomics

at Utrecht University

General Properties

Protein ID	Ani_SJS100_1\|g11781.t1
Gene name
Location	scaffold_439:3121..4096
Strand	+
Gene length (bp)	975
Transcript length (bp)	975
Coding sequence length (bp)	975
Protein length (aa)	325

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF00505	HMG_box	HMG (high mobility group) box	3.2E-09	87	155

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 58	0.45

Transmembrane Domains

(None)

Transcription Factor Class

Transcription Factor Class (based on PFAM domains)
HMG

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ani_SJS100_1\|g11781.t1 MDKTEADQTKPEPLCQNSRVRRSNRAVAMTRNGQAEHATLKLKLDLPCPLSELANGTPHIPVRDMCAWVDRPVES RHQEALQRHGRIPRPMNSFMLYRLAYSDRAKYWLAHDDHQAISILTGRSWKMEPPHIRKQHKTLAVMEKQKHAEA HPEYRFSPSNKKKRSRTARPSSQEFVLRSEAFPKVSRSSQPHAWSTSLNNDRVSGPSAEPFLAEEETLLKSIPSN PDSFGPLQSATSVWWQGTTYSQMASAEQDSTGTQPCFPVVTGQPGIPDSACFVPQSGSPGLEAVNGQSALLPLSV SNETCKVDEELLMEGTQRVATVGQ*
Coding	>Ani_SJS100_1\|g11781.t1 ATGGATAAGACCGAGGCGGACCAGACAAAGCCAGAGCCTTTGTGTCAGAACAGCAGAGTCCGACGGTCGAATCGC GCCGTAGCCATGACAAGGAACGGCCAAGCCGAGCACGCAACGTTGAAGCTCAAGCTAGACTTACCATGCCCACTC AGCGAATTGGCCAACGGCACGCCGCACATCCCGGTTAGAGACATGTGCGCCTGGGTCGATCGCCCGGTCGAGTCA CGCCACCAGGAGGCTCTACAACGGCATGGCAGGATTCCACGTCCGATGAATTCATTCATGCTGTACCGGCTGGCG TACAGTGATCGAGCGAAGTACTGGCTCGCCCACGATGATCATCAGGCCATCTCCATCCTCACCGGACGGAGCTGG AAGATGGAACCCCCCCACATCCGTAAGCAGCACAAGACGCTCGCGGTGATGGAGAAACAAAAGCATGCTGAAGCG CACCCGGAATATCGGTTCTCGCCGTCAAACAAGAAGAAACGATCGCGGACTGCAAGACCCAGTTCTCAGGAATTC GTGTTGCGTTCGGAGGCGTTCCCCAAAGTCAGCCGAAGTTCTCAGCCTCATGCTTGGTCTACTTCGTTGAACAAT GACCGCGTCAGTGGACCCTCCGCAGAACCATTCCTTGCAGAAGAGGAAACTCTCCTCAAAAGTATTCCATCGAAC CCAGATAGTTTTGGACCATTGCAAAGTGCTACCTCGGTGTGGTGGCAGGGGACAACCTACTCTCAGATGGCCTCT GCTGAGCAAGACTCCACGGGCACTCAGCCTTGTTTTCCTGTCGTCACGGGCCAGCCGGGGATACCGGACTCTGCT TGCTTCGTTCCCCAATCTGGATCCCCTGGACTCGAAGCTGTCAATGGACAGTCTGCTTTACTGCCACTGTCTGTT TCGAATGAGACTTGTAAGGTTGACGAAGAATTGCTTATGGAAGGGACGCAGCGGGTTGCGACTGTAGGCCAGTAA
Transcript	>Ani_SJS100_1\|g11781.t1 ATGGATAAGACCGAGGCGGACCAGACAAAGCCAGAGCCTTTGTGTCAGAACAGCAGAGTCCGACGGTCGAATCGC GCCGTAGCCATGACAAGGAACGGCCAAGCCGAGCACGCAACGTTGAAGCTCAAGCTAGACTTACCATGCCCACTC AGCGAATTGGCCAACGGCACGCCGCACATCCCGGTTAGAGACATGTGCGCCTGGGTCGATCGCCCGGTCGAGTCA CGCCACCAGGAGGCTCTACAACGGCATGGCAGGATTCCACGTCCGATGAATTCATTCATGCTGTACCGGCTGGCG TACAGTGATCGAGCGAAGTACTGGCTCGCCCACGATGATCATCAGGCCATCTCCATCCTCACCGGACGGAGCTGG AAGATGGAACCCCCCCACATCCGTAAGCAGCACAAGACGCTCGCGGTGATGGAGAAACAAAAGCATGCTGAAGCG CACCCGGAATATCGGTTCTCGCCGTCAAACAAGAAGAAACGATCGCGGACTGCAAGACCCAGTTCTCAGGAATTC GTGTTGCGTTCGGAGGCGTTCCCCAAAGTCAGCCGAAGTTCTCAGCCTCATGCTTGGTCTACTTCGTTGAACAAT GACCGCGTCAGTGGACCCTCCGCAGAACCATTCCTTGCAGAAGAGGAAACTCTCCTCAAAAGTATTCCATCGAAC CCAGATAGTTTTGGACCATTGCAAAGTGCTACCTCGGTGTGGTGGCAGGGGACAACCTACTCTCAGATGGCCTCT GCTGAGCAAGACTCCACGGGCACTCAGCCTTGTTTTCCTGTCGTCACGGGCCAGCCGGGGATACCGGACTCTGCT TGCTTCGTTCCCCAATCTGGATCCCCTGGACTCGAAGCTGTCAATGGACAGTCTGCTTTACTGCCACTGTCTGTT TCGAATGAGACTTGTAAGGTTGACGAAGAATTGCTTATGGAAGGGACGCAGCGGGTTGCGACTGTAGGCCAGTAA
Gene	>Ani_SJS100_1\|g11781.t1 ATGGATAAGACCGAGGCGGACCAGACAAAGCCAGAGCCTTTGTGTCAGAACAGCAGAGTCCGACGGTCGAATCGC GCCGTAGCCATGACAAGGAACGGCCAAGCCGAGCACGCAACGTTGAAGCTCAAGCTAGACTTACCATGCCCACTC AGCGAATTGGCCAACGGCACGCCGCACATCCCGGTTAGAGACATGTGCGCCTGGGTCGATCGCCCGGTCGAGTCA CGCCACCAGGAGGCTCTACAACGGCATGGCAGGATTCCACGTCCGATGAATTCATTCATGCTGTACCGGCTGGCG TACAGTGATCGAGCGAAGTACTGGCTCGCCCACGATGATCATCAGGCCATCTCCATCCTCACCGGACGGAGCTGG AAGATGGAACCCCCCCACATCCGTAAGCAGCACAAGACGCTCGCGGTGATGGAGAAACAAAAGCATGCTGAAGCG CACCCGGAATATCGGTTCTCGCCGTCAAACAAGAAGAAACGATCGCGGACTGCAAGACCCAGTTCTCAGGAATTC GTGTTGCGTTCGGAGGCGTTCCCCAAAGTCAGCCGAAGTTCTCAGCCTCATGCTTGGTCTACTTCGTTGAACAAT GACCGCGTCAGTGGACCCTCCGCAGAACCATTCCTTGCAGAAGAGGAAACTCTCCTCAAAAGTATTCCATCGAAC CCAGATAGTTTTGGACCATTGCAAAGTGCTACCTCGGTGTGGTGGCAGGGGACAACCTACTCTCAGATGGCCTCT GCTGAGCAAGACTCCACGGGCACTCAGCCTTGTTTTCCTGTCGTCACGGGCCAGCCGGGGATACCGGACTCTGCT TGCTTCGTTCCCCAATCTGGATCCCCTGGACTCGAAGCTGTCAATGGACAGTCTGCTTTACTGCCACTGTCTGTT TCGAATGAGACTTGTAAGGTTGACGAAGAATTGCTTATGGAAGGGACGCAGCGGGTTGCGACTGTAGGCCAGTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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