Protein ID | Ani_SJS100_1|g11781.t1 |
Gene name | |
Location | scaffold_439:3121..4096 |
Strand | + |
Gene length (bp) | 975 |
Transcript length (bp) | 975 |
Coding sequence length (bp) | 975 |
Protein length (aa) | 325 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF00505 | HMG_box | HMG (high mobility group) box | 3.2E-09 | 87 | 155 |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 58 | 0.45 |
Transcription Factor Class (based on PFAM domains) |
---|
HMG |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ani_SJS100_1|g11781.t1 MDKTEADQTKPEPLCQNSRVRRSNRAVAMTRNGQAEHATLKLKLDLPCPLSELANGTPHIPVRDMCAWVDRPVES RHQEALQRHGRIPRPMNSFMLYRLAYSDRAKYWLAHDDHQAISILTGRSWKMEPPHIRKQHKTLAVMEKQKHAEA HPEYRFSPSNKKKRSRTARPSSQEFVLRSEAFPKVSRSSQPHAWSTSLNNDRVSGPSAEPFLAEEETLLKSIPSN PDSFGPLQSATSVWWQGTTYSQMASAEQDSTGTQPCFPVVTGQPGIPDSACFVPQSGSPGLEAVNGQSALLPLSV SNETCKVDEELLMEGTQRVATVGQ* |
Coding | >Ani_SJS100_1|g11781.t1 ATGGATAAGACCGAGGCGGACCAGACAAAGCCAGAGCCTTTGTGTCAGAACAGCAGAGTCCGACGGTCGAATCGC GCCGTAGCCATGACAAGGAACGGCCAAGCCGAGCACGCAACGTTGAAGCTCAAGCTAGACTTACCATGCCCACTC AGCGAATTGGCCAACGGCACGCCGCACATCCCGGTTAGAGACATGTGCGCCTGGGTCGATCGCCCGGTCGAGTCA CGCCACCAGGAGGCTCTACAACGGCATGGCAGGATTCCACGTCCGATGAATTCATTCATGCTGTACCGGCTGGCG TACAGTGATCGAGCGAAGTACTGGCTCGCCCACGATGATCATCAGGCCATCTCCATCCTCACCGGACGGAGCTGG AAGATGGAACCCCCCCACATCCGTAAGCAGCACAAGACGCTCGCGGTGATGGAGAAACAAAAGCATGCTGAAGCG CACCCGGAATATCGGTTCTCGCCGTCAAACAAGAAGAAACGATCGCGGACTGCAAGACCCAGTTCTCAGGAATTC GTGTTGCGTTCGGAGGCGTTCCCCAAAGTCAGCCGAAGTTCTCAGCCTCATGCTTGGTCTACTTCGTTGAACAAT GACCGCGTCAGTGGACCCTCCGCAGAACCATTCCTTGCAGAAGAGGAAACTCTCCTCAAAAGTATTCCATCGAAC CCAGATAGTTTTGGACCATTGCAAAGTGCTACCTCGGTGTGGTGGCAGGGGACAACCTACTCTCAGATGGCCTCT GCTGAGCAAGACTCCACGGGCACTCAGCCTTGTTTTCCTGTCGTCACGGGCCAGCCGGGGATACCGGACTCTGCT TGCTTCGTTCCCCAATCTGGATCCCCTGGACTCGAAGCTGTCAATGGACAGTCTGCTTTACTGCCACTGTCTGTT TCGAATGAGACTTGTAAGGTTGACGAAGAATTGCTTATGGAAGGGACGCAGCGGGTTGCGACTGTAGGCCAGTAA |
Transcript | >Ani_SJS100_1|g11781.t1 ATGGATAAGACCGAGGCGGACCAGACAAAGCCAGAGCCTTTGTGTCAGAACAGCAGAGTCCGACGGTCGAATCGC GCCGTAGCCATGACAAGGAACGGCCAAGCCGAGCACGCAACGTTGAAGCTCAAGCTAGACTTACCATGCCCACTC AGCGAATTGGCCAACGGCACGCCGCACATCCCGGTTAGAGACATGTGCGCCTGGGTCGATCGCCCGGTCGAGTCA CGCCACCAGGAGGCTCTACAACGGCATGGCAGGATTCCACGTCCGATGAATTCATTCATGCTGTACCGGCTGGCG TACAGTGATCGAGCGAAGTACTGGCTCGCCCACGATGATCATCAGGCCATCTCCATCCTCACCGGACGGAGCTGG AAGATGGAACCCCCCCACATCCGTAAGCAGCACAAGACGCTCGCGGTGATGGAGAAACAAAAGCATGCTGAAGCG CACCCGGAATATCGGTTCTCGCCGTCAAACAAGAAGAAACGATCGCGGACTGCAAGACCCAGTTCTCAGGAATTC GTGTTGCGTTCGGAGGCGTTCCCCAAAGTCAGCCGAAGTTCTCAGCCTCATGCTTGGTCTACTTCGTTGAACAAT GACCGCGTCAGTGGACCCTCCGCAGAACCATTCCTTGCAGAAGAGGAAACTCTCCTCAAAAGTATTCCATCGAAC CCAGATAGTTTTGGACCATTGCAAAGTGCTACCTCGGTGTGGTGGCAGGGGACAACCTACTCTCAGATGGCCTCT GCTGAGCAAGACTCCACGGGCACTCAGCCTTGTTTTCCTGTCGTCACGGGCCAGCCGGGGATACCGGACTCTGCT TGCTTCGTTCCCCAATCTGGATCCCCTGGACTCGAAGCTGTCAATGGACAGTCTGCTTTACTGCCACTGTCTGTT TCGAATGAGACTTGTAAGGTTGACGAAGAATTGCTTATGGAAGGGACGCAGCGGGTTGCGACTGTAGGCCAGTAA |
Gene | >Ani_SJS100_1|g11781.t1 ATGGATAAGACCGAGGCGGACCAGACAAAGCCAGAGCCTTTGTGTCAGAACAGCAGAGTCCGACGGTCGAATCGC GCCGTAGCCATGACAAGGAACGGCCAAGCCGAGCACGCAACGTTGAAGCTCAAGCTAGACTTACCATGCCCACTC AGCGAATTGGCCAACGGCACGCCGCACATCCCGGTTAGAGACATGTGCGCCTGGGTCGATCGCCCGGTCGAGTCA CGCCACCAGGAGGCTCTACAACGGCATGGCAGGATTCCACGTCCGATGAATTCATTCATGCTGTACCGGCTGGCG TACAGTGATCGAGCGAAGTACTGGCTCGCCCACGATGATCATCAGGCCATCTCCATCCTCACCGGACGGAGCTGG AAGATGGAACCCCCCCACATCCGTAAGCAGCACAAGACGCTCGCGGTGATGGAGAAACAAAAGCATGCTGAAGCG CACCCGGAATATCGGTTCTCGCCGTCAAACAAGAAGAAACGATCGCGGACTGCAAGACCCAGTTCTCAGGAATTC GTGTTGCGTTCGGAGGCGTTCCCCAAAGTCAGCCGAAGTTCTCAGCCTCATGCTTGGTCTACTTCGTTGAACAAT GACCGCGTCAGTGGACCCTCCGCAGAACCATTCCTTGCAGAAGAGGAAACTCTCCTCAAAAGTATTCCATCGAAC CCAGATAGTTTTGGACCATTGCAAAGTGCTACCTCGGTGTGGTGGCAGGGGACAACCTACTCTCAGATGGCCTCT GCTGAGCAAGACTCCACGGGCACTCAGCCTTGTTTTCCTGTCGTCACGGGCCAGCCGGGGATACCGGACTCTGCT TGCTTCGTTCCCCAATCTGGATCCCCTGGACTCGAAGCTGTCAATGGACAGTCTGCTTTACTGCCACTGTCTGTT TCGAATGAGACTTGTAAGGTTGACGAAGAATTGCTTATGGAAGGGACGCAGCGGGTTGCGACTGTAGGCCAGTAA |