© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS100_1|g1169.t1 |
| Gene name | |
| Location | scaffold_004:215515..217218 |
| Strand | + |
| Gene length (bp) | 1703 |
| Transcript length (bp) | 1650 |
| Coding sequence length (bp) | 1650 |
| Protein length (aa) | 550 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04515 | Choline_transpo | Plasma-membrane choline transporter | 2.3E-85 | 200 | 523 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0008150 | biological_process | No |
| GO:0051234 | establishment of localization | No |
| GO:0051179 | localization | No |
| GO:0009987 | cellular process | No |
| GO:0005215 | transporter activity | No |
| GO:0006810 | transport | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 68 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 94 | 116 | 22 |
| 2 | 141 | 163 | 22 |
| 3 | 170 | 192 | 22 |
| 4 | 196 | 218 | 22 |
| 5 | 246 | 268 | 22 |
| 6 | 288 | 310 | 22 |
| 7 | 349 | 368 | 19 |
| 8 | 383 | 405 | 22 |
| 9 | 447 | 469 | 22 |
| 10 | 484 | 503 | 19 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g1169.t1 MSGQASSYYNTNQSFGDQPQPPPQQQHQQQQQYAYYNYDQAPQPAPNQHNGGDYRGPEPKPPQEPPQGPPPTYNQ AVYGFDEAFQVERPKYNDIWAGLLFIAVFLGYVAVSGVTIHRYAKYKGFSGGGIYDASNDFSLNTNTLVLFIFVL CVALAFSYAYFLGARYFSKLFIWVTGILNIVFALATGIYYIVRGQYGGGIVFLIFGVFAIVCFISWIPRIPFTAY MMEVSIDVSRQYGHMFLVSTIGGLVAVAFAAWFSVTLVSIYVAYEPDSTGVNPACPNGSGGCSTARVIGLVVYVT FAMYWFSEWLKNTVHTTIAGVYGSWYFFANSPQGMPHGATRGAFRRATTYSFGSISFGSLILALIQMLRQACSIA QQQEAAQGSLIGSIGFWVLGCFISLLDWLVTFFNRYAFCHIALYGKAYIPSAKDTWKMMKDRGVDALVNDCLVGP VLTMGSVFVSYVCALLAYLYLQFTNPGYNQGGDFTAVIMAFAFVIGLQICQIFMTPVSSGIETIFAAMAWDPQVL VHDHSEMYYRLVQLYPKVQQAIHA* |
| Coding | >Ani_SJS100_1|g1169.t1 ATGAGTGGCCAGGCATCCAGCTATTACAACACCAACCAGAGCTTTGGCGATCAGCCTCAGCCGCCGCCGCAACAA CAACACCAACAACAACAACAATATGCGTACTACAACTACGACCAAGCTCCCCAGCCAGCACCAAACCAACACAAT GGCGGTGATTATCGAGGACCTGAACCGAAACCTCCTCAGGAACCTCCTCAGGGGCCCCCGCCAACCTACAACCAA GCTGTGTATGGGTTTGATGAAGCTTTCCAAGTCGAACGGCCCAAGTACAATGACATCTGGGCGGGACTCTTGTTC ATTGCCGTCTTCCTCGGCTACGTTGCAGTGTCCGGCGTGACCATCCATCGCTATGCGAAATACAAAGGCTTCAGC GGCGGCGGCATTTACGATGCGAGCAACGACTTCTCCCTCAACACAAACACCCTCGTGCTCTTCATATTCGTCCTC TGTGTGGCCCTCGCCTTCTCATATGCCTACTTTCTCGGTGCGCGATACTTCTCCAAGCTCTTCATCTGGGTCACG GGCATCTTGAACATCGTCTTCGCTCTCGCCACTGGTATCTACTACATCGTTCGGGGGCAATACGGCGGTGGCATA GTCTTCCTCATTTTCGGCGTCTTCGCCATCGTCTGCTTCATCAGCTGGATCCCCCGCATCCCGTTCACAGCCTAC ATGATGGAGGTCTCCATCGACGTCTCGCGCCAATACGGCCACATGTTCCTGGTCAGCACCATCGGTGGCCTAGTC GCCGTCGCCTTCGCCGCCTGGTTCTCCGTCACGCTCGTTTCGATCTACGTTGCCTACGAGCCCGACAGCACCGGC GTCAACCCGGCCTGCCCCAATGGCTCCGGCGGCTGCAGCACCGCCCGAGTCATCGGCCTAGTCGTCTACGTCACC TTTGCCATGTACTGGTTCAGCGAATGGCTCAAGAACACCGTACACACCACCATCGCCGGCGTCTACGGCTCCTGG TACTTCTTCGCCAACTCGCCGCAAGGCATGCCCCACGGTGCCACGCGCGGCGCCTTCCGTCGCGCCACCACCTAC TCCTTCGGCAGCATCAGCTTCGGTTCGCTCATTCTCGCCTTGATTCAAATGCTCCGGCAAGCGTGCTCCATCGCG CAGCAGCAGGAAGCTGCCCAGGGCAGTCTCATCGGTAGCATTGGGTTCTGGGTCCTGGGTTGTTTCATCTCCTTG CTCGATTGGCTCGTCACGTTCTTCAATCGCTACGCGTTCTGCCATATCGCCCTGTACGGGAAAGCATATATCCCC TCTGCCAAGGATACGTGGAAAATGATGAAGGACCGTGGCGTGGACGCCCTTGTTAATGATTGTCTGGTGGGTCCG GTGTTGACGATGGGGTCCGTGTTCGTCTCGTATGTGTGCGCGCTGCTGGCATATTTGTATCTCCAGTTCACGAAC CCTGGGTATAATCAGGGCGGGGATTTCACGGCAGTCATTATGGCGTTTGCGTTTGTGATTGGGTTGCAGATTTGT CAGATCTTTATGACCCCTGTGAGTAGTGGCATTGAAACTATCTTTGCTGCTATGGCGTGGGATCCGCAGGTTTTG GTGCATGATCATTCCGAGATGTATTATCGGTTGGTGCAGTTGTATCCGAAGGTGCAGCAGGCCATCCATGCTTGA |
| Transcript | >Ani_SJS100_1|g1169.t1 ATGAGTGGCCAGGCATCCAGCTATTACAACACCAACCAGAGCTTTGGCGATCAGCCTCAGCCGCCGCCGCAACAA CAACACCAACAACAACAACAATATGCGTACTACAACTACGACCAAGCTCCCCAGCCAGCACCAAACCAACACAAT GGCGGTGATTATCGAGGACCTGAACCGAAACCTCCTCAGGAACCTCCTCAGGGGCCCCCGCCAACCTACAACCAA GCTGTGTATGGGTTTGATGAAGCTTTCCAAGTCGAACGGCCCAAGTACAATGACATCTGGGCGGGACTCTTGTTC ATTGCCGTCTTCCTCGGCTACGTTGCAGTGTCCGGCGTGACCATCCATCGCTATGCGAAATACAAAGGCTTCAGC GGCGGCGGCATTTACGATGCGAGCAACGACTTCTCCCTCAACACAAACACCCTCGTGCTCTTCATATTCGTCCTC TGTGTGGCCCTCGCCTTCTCATATGCCTACTTTCTCGGTGCGCGATACTTCTCCAAGCTCTTCATCTGGGTCACG GGCATCTTGAACATCGTCTTCGCTCTCGCCACTGGTATCTACTACATCGTTCGGGGGCAATACGGCGGTGGCATA GTCTTCCTCATTTTCGGCGTCTTCGCCATCGTCTGCTTCATCAGCTGGATCCCCCGCATCCCGTTCACAGCCTAC ATGATGGAGGTCTCCATCGACGTCTCGCGCCAATACGGCCACATGTTCCTGGTCAGCACCATCGGTGGCCTAGTC GCCGTCGCCTTCGCCGCCTGGTTCTCCGTCACGCTCGTTTCGATCTACGTTGCCTACGAGCCCGACAGCACCGGC GTCAACCCGGCCTGCCCCAATGGCTCCGGCGGCTGCAGCACCGCCCGAGTCATCGGCCTAGTCGTCTACGTCACC TTTGCCATGTACTGGTTCAGCGAATGGCTCAAGAACACCGTACACACCACCATCGCCGGCGTCTACGGCTCCTGG TACTTCTTCGCCAACTCGCCGCAAGGCATGCCCCACGGTGCCACGCGCGGCGCCTTCCGTCGCGCCACCACCTAC TCCTTCGGCAGCATCAGCTTCGGTTCGCTCATTCTCGCCTTGATTCAAATGCTCCGGCAAGCGTGCTCCATCGCG CAGCAGCAGGAAGCTGCCCAGGGCAGTCTCATCGGTAGCATTGGGTTCTGGGTCCTGGGTTGTTTCATCTCCTTG CTCGATTGGCTCGTCACGTTCTTCAATCGCTACGCGTTCTGCCATATCGCCCTGTACGGGAAAGCATATATCCCC TCTGCCAAGGATACGTGGAAAATGATGAAGGACCGTGGCGTGGACGCCCTTGTTAATGATTGTCTGGTGGGTCCG GTGTTGACGATGGGGTCCGTGTTCGTCTCGTATGTGTGCGCGCTGCTGGCATATTTGTATCTCCAGTTCACGAAC CCTGGGTATAATCAGGGCGGGGATTTCACGGCAGTCATTATGGCGTTTGCGTTTGTGATTGGGTTGCAGATTTGT CAGATCTTTATGACCCCTGTGAGTAGTGGCATTGAAACTATCTTTGCTGCTATGGCGTGGGATCCGCAGGTTTTG GTGCATGATCATTCCGAGATGTATTATCGGTTGGTGCAGTTGTATCCGAAGGTGCAGCAGGCCATCCATGCTTGA |
| Gene | >Ani_SJS100_1|g1169.t1 ATGAGTGGCCAGGCATCCAGCTATTACAACACCAACCAGAGCTTTGGCGATCAGCCTCAGCCGCCGCCGCAACAA CAACACCAACAACAACAACAATATGCGTACTACAACTACGACCAAGCTCCCCAGCCAGCACCAAACCAACACAAT GGCGGTGATTATCGAGGACCTGAACCGAAACCTCCTCAGGAACCTCCTCAGGGGCCCCCGCCAACCTACAACCAA GCTGTGTATGGGTTTGATGAAGCTTTCCAAGTCGAACGGCCCAAGTACAATGACATCTGGGCGGGACTCTTGGTA GGTATCCCTATGTTTCCACATATAGAAGGTCAATACTAAACCTCTGGCAGTTCATTGCCGTCTTCCTCGGCTACG TTGCAGTGTCCGGCGTGACCATCCATCGCTATGCGAAATACAAAGGCTTCAGCGGCGGCGGCATTTACGATGCGA GCAACGACTTCTCCCTCAACACAAACACCCTCGTGCTCTTCATATTCGTCCTCTGTGTGGCCCTCGCCTTCTCAT ATGCCTACTTTCTCGGTGCGCGATACTTCTCCAAGCTCTTCATCTGGGTCACGGGCATCTTGAACATCGTCTTCG CTCTCGCCACTGGTATCTACTACATCGTTCGGGGGCAATACGGCGGTGGCATAGTCTTCCTCATTTTCGGCGTCT TCGCCATCGTCTGCTTCATCAGCTGGATCCCCCGCATCCCGTTCACAGCCTACATGATGGAGGTCTCCATCGACG TCTCGCGCCAATACGGCCACATGTTCCTGGTCAGCACCATCGGTGGCCTAGTCGCCGTCGCCTTCGCCGCCTGGT TCTCCGTCACGCTCGTTTCGATCTACGTTGCCTACGAGCCCGACAGCACCGGCGTCAACCCGGCCTGCCCCAATG GCTCCGGCGGCTGCAGCACCGCCCGAGTCATCGGCCTAGTCGTCTACGTCACCTTTGCCATGTACTGGTTCAGCG AATGGCTCAAGAACACCGTACACACCACCATCGCCGGCGTCTACGGCTCCTGGTACTTCTTCGCCAACTCGCCGC AAGGCATGCCCCACGGTGCCACGCGCGGCGCCTTCCGTCGCGCCACCACCTACTCCTTCGGCAGCATCAGCTTCG GTTCGCTCATTCTCGCCTTGATTCAAATGCTCCGGCAAGCGTGCTCCATCGCGCAGCAGCAGGAAGCTGCCCAGG GCAGTCTCATCGGTAGCATTGGGTTCTGGGTCCTGGGTTGTTTCATCTCCTTGCTCGATTGGCTCGTCACGTTCT TCAATCGCTACGCGTTCTGCCATATCGCCCTGTACGGGAAAGCATATATCCCCTCTGCCAAGGATACGTGGAAAA TGATGAAGGACCGTGGCGTGGACGCCCTTGTTAATGATTGTCTGGTGGGTCCGGTGTTGACGATGGGGTCCGTGT TCGTCTCGTATGTGTGCGCGCTGCTGGCATATTTGTATCTCCAGTTCACGAACCCTGGGTATAATCAGGGCGGGG ATTTCACGGCAGTCATTATGGCGTTTGCGTTTGTGATTGGGTTGCAGATTTGTCAGATCTTTATGACCCCTGTGA GTAGTGGCATTGAAACTATCTTTGCTGCTATGGCGTGGGATCCGCAGGTTTTGGTGCATGATCATTCCGAGATGT ATTATCGGTTGGTGCAGTTGTATCCGAAGGTGCAGCAGGCCATCCATGCTTGA |