Protein ID | Ani_SJS100_1|g11668.t1 |
Gene name | |
Location | scaffold_327:2394..5906 |
Strand | + |
Gene length (bp) | 3512 |
Transcript length (bp) | 2361 |
Coding sequence length (bp) | 2361 |
Protein length (aa) | 787 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF00505 | HMG_box | HMG (high mobility group) box | 3.3E-10 | 166 | 234 |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 20 | 0.45 |
Transcription Factor Class (based on PFAM domains) |
---|
HMG |
Type of sequence | Sequence |
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Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ani_SJS100_1|g11668.t1 MSVLPHPFYQPCFTPGTACADLRQHLPCTSDVPSPGSGEYTVRFDQAVPMAMISAESSNPVVSQPVVDGTHACAN SFILMDKTEADRTQPEPLCQNSRVRRSNRAVAMTRNGQVEHATLKLNLDLPCPLSELANGTPHIPVRDMCAWVDR PVESRHQEALQRHGRIPRPMNSFMLYRLAYSDRAKYWLAHDDHQAISILTGRSWKMEPPHIRKQYKTLAVMEKQK HAEAHPEYRFSPSNKKKRSRTARARSQKLVLRSEAFHKVSRSSQPHAWSTSLNNDRVNGPSTEPFLAEEETLLKS IPSNPDSFGPLQSATSVWWQGTTYSQMASAEQDSTGTQPCFPVVTGQPGIPDSACFVPQSGSPGLEAVNCQSALL PLSVSNETCKVDEELLMEGTQRVATVGHERLSGLAIAGEGSVSAAAPFRQHQEDTNATEPVEDHRKTLEARTKCS HTSPCEACRKARSACVPQSDRPRANRRTTICTKTLTEKLPIHGAYADQPSNDTTTTYGAHANESMEGHRWSASDM GCASVITIPRENDAERDTPTTCPVDITSRGEWNAVGDDRNNTLPSETGVNAGWGPPSSVIPLPNSYMPADNLAEH PTADAWYSMPRTTEPCSWETLPESFWGWTWPQSEYLAGSETDGFLHPSIPVQQSAGWPFGSEAEQPQYATRSGIM PFWVDHSQELFPLGPSPDPPEPIPSSVAARLSSMPPETRPPNIPNLYRVQQAEDVSLSIPTFVPLQLPSWDPLAP VSAALPMTDFHRRSMHQEPSAPVPVPNIESLVPPWL* |
Coding | >Ani_SJS100_1|g11668.t1 ATGTCTGTCCTGCCGCACCCATTCTACCAGCCATGTTTCACACCTGGTACCGCCTGTGCGGATCTCAGGCAGCAC CTCCCGTGCACTTCTGACGTTCCATCCCCTGGCTCTGGGGAATACACCGTGCGCTTCGATCAGGCCGTCCCTATG GCAATGATTTCGGCCGAAAGCTCCAATCCTGTGGTTTCACAGCCGGTAGTTGACGGAACCCATGCCTGCGCGAAC TCGTTCATCCTGATGGATAAGACCGAGGCGGACCGGACACAGCCAGAGCCTTTGTGTCAGAACAGCAGAGTCCGA CGGTCGAATCGCGCCGTAGCCATGACAAGGAATGGCCAAGTCGAGCACGCAACGTTGAAGCTCAATCTAGACCTG CCATGCCCACTCAGCGAACTGGCCAACGGCACGCCGCACATCCCGGTTAGAGACATGTGCGCCTGGGTCGATCGC CCGGTCGAGTCACGCCACCAGGAGGCTCTACAACGGCATGGCAGGATTCCACGTCCGATGAATTCATTCATGTTG TACCGGCTGGCGTACAGTGATCGAGCGAAGTACTGGCTCGCCCACGATGATCATCAGGCCATCTCCATCCTCACC GGACGGAGCTGGAAGATGGAACCCCCCCACATCCGTAAGCAGTACAAGACGCTCGCAGTGATGGAGAAACAAAAG CATGCTGAAGCGCACCCGGAATATCGGTTCTCGCCGTCAAACAAGAAGAAACGATCGCGGACTGCAAGGGCCCGT TCTCAGAAATTGGTGTTGCGTTCGGAGGCGTTCCACAAAGTCAGCCGAAGTTCTCAGCCTCATGCTTGGTCTACT TCGTTGAACAATGACCGCGTCAATGGACCCTCCACAGAACCATTCCTTGCAGAAGAGGAAACTCTCCTCAAAAGC ATTCCATCGAACCCAGATAGTTTTGGACCATTGCAAAGTGCCACCTCGGTGTGGTGGCAGGGGACAACCTACTCT CAGATGGCCTCTGCGGAGCAAGACTCCACGGGCACTCAGCCTTGTTTTCCTGTCGTCACGGGCCAGCCGGGGATA CCGGACTCTGCTTGCTTCGTTCCCCAATCTGGATCCCCTGGACTCGAAGCTGTCAACTGTCAATCTGCTTTACTG CCACTGTCTGTTTCAAATGAGACTTGTAAGGTTGACGAAGAATTGCTTATGGAAGGGACGCAGCGGGTTGCGACT GTAGGCCACGAGCGGCTTAGTGGACTTGCGATTGCAGGAGAAGGCTCCGTATCGGCTGCAGCCCCATTCCGTCAG CACCAAGAGGATACCAATGCTACCGAGCCTGTCGAGGACCACCGAAAGACGTTGGAGGCACGTACTAAGTGTTCT CATACCTCGCCCTGCGAAGCGTGCCGGAAAGCCAGGAGTGCGTGCGTTCCTCAGTCGGATCGGCCGAGGGCGAAC CGTCGTACTACGATCTGTACCAAAACACTAACAGAGAAGTTGCCAATCCACGGGGCTTATGCAGACCAGCCATCC AATGACACCACAACAACGTATGGGGCTCACGCTAACGAATCCATGGAGGGACACCGATGGAGCGCGTCCGACATG GGCTGCGCTTCAGTTATCACCATCCCAAGAGAGAATGATGCTGAACGTGACACACCCACTACGTGCCCTGTCGAC ATTACTTCTCGTGGGGAATGGAACGCAGTTGGAGATGATAGGAACAACACTCTCCCATCTGAAACTGGCGTGAAT GCAGGCTGGGGACCCCCATCCAGTGTGATCCCACTCCCGAACTCGTATATGCCCGCAGACAACTTGGCAGAGCAT CCTACGGCAGATGCATGGTACTCGATGCCGAGGACTACGGAGCCATGCTCGTGGGAGACGTTGCCCGAATCTTTC TGGGGTTGGACCTGGCCTCAATCCGAGTATCTGGCCGGGTCCGAGACCGACGGTTTCTTACATCCGTCAATTCCT GTACAGCAGTCGGCAGGTTGGCCCTTTGGAAGCGAGGCTGAACAGCCTCAGTATGCAACCAGAAGCGGGATCATG CCCTTCTGGGTAGATCACTCACAGGAGCTGTTCCCTTTAGGTCCCTCACCTGATCCACCGGAGCCTATTCCTTCG TCCGTCGCAGCCAGGTTGTCTTCTATGCCACCAGAGACTAGGCCACCAAATATCCCAAATTTGTATCGTGTGCAG CAGGCCGAAGATGTCAGCTTGTCAATCCCAACTTTTGTCCCATTGCAATTGCCTTCTTGGGATCCATTGGCGCCT GTTTCCGCAGCATTGCCCATGACAGACTTCCACCGCCGCAGCATGCATCAGGAACCATCTGCGCCCGTCCCCGTG CCGAACATCGAGTCGCTAGTACCCCCATGGCTATAG |
Transcript | >Ani_SJS100_1|g11668.t1 ATGTCTGTCCTGCCGCACCCATTCTACCAGCCATGTTTCACACCTGGTACCGCCTGTGCGGATCTCAGGCAGCAC CTCCCGTGCACTTCTGACGTTCCATCCCCTGGCTCTGGGGAATACACCGTGCGCTTCGATCAGGCCGTCCCTATG GCAATGATTTCGGCCGAAAGCTCCAATCCTGTGGTTTCACAGCCGGTAGTTGACGGAACCCATGCCTGCGCGAAC TCGTTCATCCTGATGGATAAGACCGAGGCGGACCGGACACAGCCAGAGCCTTTGTGTCAGAACAGCAGAGTCCGA CGGTCGAATCGCGCCGTAGCCATGACAAGGAATGGCCAAGTCGAGCACGCAACGTTGAAGCTCAATCTAGACCTG CCATGCCCACTCAGCGAACTGGCCAACGGCACGCCGCACATCCCGGTTAGAGACATGTGCGCCTGGGTCGATCGC CCGGTCGAGTCACGCCACCAGGAGGCTCTACAACGGCATGGCAGGATTCCACGTCCGATGAATTCATTCATGTTG TACCGGCTGGCGTACAGTGATCGAGCGAAGTACTGGCTCGCCCACGATGATCATCAGGCCATCTCCATCCTCACC GGACGGAGCTGGAAGATGGAACCCCCCCACATCCGTAAGCAGTACAAGACGCTCGCAGTGATGGAGAAACAAAAG CATGCTGAAGCGCACCCGGAATATCGGTTCTCGCCGTCAAACAAGAAGAAACGATCGCGGACTGCAAGGGCCCGT TCTCAGAAATTGGTGTTGCGTTCGGAGGCGTTCCACAAAGTCAGCCGAAGTTCTCAGCCTCATGCTTGGTCTACT TCGTTGAACAATGACCGCGTCAATGGACCCTCCACAGAACCATTCCTTGCAGAAGAGGAAACTCTCCTCAAAAGC ATTCCATCGAACCCAGATAGTTTTGGACCATTGCAAAGTGCCACCTCGGTGTGGTGGCAGGGGACAACCTACTCT CAGATGGCCTCTGCGGAGCAAGACTCCACGGGCACTCAGCCTTGTTTTCCTGTCGTCACGGGCCAGCCGGGGATA CCGGACTCTGCTTGCTTCGTTCCCCAATCTGGATCCCCTGGACTCGAAGCTGTCAACTGTCAATCTGCTTTACTG CCACTGTCTGTTTCAAATGAGACTTGTAAGGTTGACGAAGAATTGCTTATGGAAGGGACGCAGCGGGTTGCGACT GTAGGCCACGAGCGGCTTAGTGGACTTGCGATTGCAGGAGAAGGCTCCGTATCGGCTGCAGCCCCATTCCGTCAG CACCAAGAGGATACCAATGCTACCGAGCCTGTCGAGGACCACCGAAAGACGTTGGAGGCACGTACTAAGTGTTCT CATACCTCGCCCTGCGAAGCGTGCCGGAAAGCCAGGAGTGCGTGCGTTCCTCAGTCGGATCGGCCGAGGGCGAAC CGTCGTACTACGATCTGTACCAAAACACTAACAGAGAAGTTGCCAATCCACGGGGCTTATGCAGACCAGCCATCC AATGACACCACAACAACGTATGGGGCTCACGCTAACGAATCCATGGAGGGACACCGATGGAGCGCGTCCGACATG GGCTGCGCTTCAGTTATCACCATCCCAAGAGAGAATGATGCTGAACGTGACACACCCACTACGTGCCCTGTCGAC ATTACTTCTCGTGGGGAATGGAACGCAGTTGGAGATGATAGGAACAACACTCTCCCATCTGAAACTGGCGTGAAT GCAGGCTGGGGACCCCCATCCAGTGTGATCCCACTCCCGAACTCGTATATGCCCGCAGACAACTTGGCAGAGCAT CCTACGGCAGATGCATGGTACTCGATGCCGAGGACTACGGAGCCATGCTCGTGGGAGACGTTGCCCGAATCTTTC TGGGGTTGGACCTGGCCTCAATCCGAGTATCTGGCCGGGTCCGAGACCGACGGTTTCTTACATCCGTCAATTCCT GTACAGCAGTCGGCAGGTTGGCCCTTTGGAAGCGAGGCTGAACAGCCTCAGTATGCAACCAGAAGCGGGATCATG CCCTTCTGGGTAGATCACTCACAGGAGCTGTTCCCTTTAGGTCCCTCACCTGATCCACCGGAGCCTATTCCTTCG TCCGTCGCAGCCAGGTTGTCTTCTATGCCACCAGAGACTAGGCCACCAAATATCCCAAATTTGTATCGTGTGCAG CAGGCCGAAGATGTCAGCTTGTCAATCCCAACTTTTGTCCCATTGCAATTGCCTTCTTGGGATCCATTGGCGCCT GTTTCCGCAGCATTGCCCATGACAGACTTCCACCGCCGCAGCATGCATCAGGAACCATCTGCGCCCGTCCCCGTG CCGAACATCGAGTCGCTAGTACCCCCATGGCTATAG |
Gene | >Ani_SJS100_1|g11668.t1 ATGTCTGTCCTGCCGCACCCATTCTACCAGCCATGTTTCACACCTGGTACCGCCTGTGCGGATCTCAGGCAGCAC CTCCCGTGCACTTCTGACGTTCCATCCCCTGGCTCTGGGGAATACACCGTGGTAGGCATGCACAACCCCCAGGAG CCATAAAGTCTCATATTTTGACGGTCCCAGCGCTTCGATCAGGCCGTCCCTATGGCAATGATTTCGGCCGAAAGC TCCAATCCTGTGGTTTCACAGCCGGTGAGATGCTTTGCCCCTGCGCGTCAGCTGGTAGACCAGGCGTACCAACTC GGTTCATGCTGATCTCTGTAGGTAGTTGACGGAACCCATGCCTGCGCGAACTCGTTCATCCTGATGGATAAGACC GAGGCGGACCGGACACAGCCAGAGCCTTTGTGTCAGAACAGCAGAGTCCGACGGTCGAATCGCGCCGTAGCCATG ACAAGGAATGGCCAAGTCGAGCACGCAACGTTGAAGCTCAATCTAGACCTGCCATGCCCACTCAGCGAACTGGCC AACGGCACGCCGCACATCCCGGTTAGAGACATGTGCGCCTGGGTCGATCGCCCGGTCGAGTCACGCCACCAGGAG GCTCTACAACGGCATGGCAGGATTCCACGTCCGATGAATTCATTCATGTTGTACCGGCTGGCGTACAGTGATCGA GCGAAGTACTGGCTCGCCCACGATGATCATCAGGCCATCTCCATCCTCACCGGACGGAGCTGGAAGATGGAACCC CCCCACATCCGTAAGCAGTACAAGACGCTCGCAGTGATGGAGAAACAAAAGCATGCTGAAGCGCACCCGGAATAT CGGTTCTCGCCGTCAAACAAGAAGAAACGATCGCGGACTGCAAGGGCCCGTTCTCAGAAATTGGTGTTGCGTTCG GAGGCGTTCCACAAAGTCAGCCGAAGTTCTCAGCCTCATGCTTGGTCTACTTCGTTGAACAATGACCGCGTCAAT GGACCCTCCACAGAACCATTCCTTGCAGAAGAGGAAACTCTCCTCAAAAGCATTCCATCGAACCCAGATAGTTTT GGACCATTGCAAAGTGCCACCTCGGTGTGGTGGCAGGGGACAACCTACTCTCAGATGGCCTCTGCGGAGCAAGAC TCCACGGGCACTCAGCCTTGTTTTCCTGTCGTCACGGGCCAGCCGGGGATACCGGACTCTGCTTGCTTCGTTCCC CAATCTGGATCCCCTGGACTCGAAGCTGTCAACTGTCAATCTGCTTTACTGCCACTGTCTGTTTCAAATGAGACT TGTAAGGTTGACGAAGAATTGCTTATGGAAGGGACGCAGCGGGTTGCGACTGTAGGCCAGTAAGTAACACATCTG GTTCTTGCAGCATATTTATCACATATATTGGGTATTCGTGTCGATCGCCTTGAATGCGAGGGTCCCATGTATATT ATTTATTTTTGGTTATCTCGAATAGTGCGTGTATAGGCCAGTGTTTGCATATTGGGCAATGACTTCCTCGGTAGG AGGAGGAAAGGAGACCATGTCCGCGCCTAAGACAATAGCGCCTCACTTTTCTGCAGATGACCGGTTCAGAGCGAC CATTCGGGAAGGCGTAGCCCAGGGGTCGTAAGAGCAACAGATCCCCGCACAATAGCCCAAGTCCGGAAAAAATTT ATGTGCCCCTGGGAGCCAACATGGTACCCTTGAGAGTAACGCCGCTCCCCTGATGCCCGCCGTTCGTCACAGAAA CAGCAAATTTACTTCCTGCCTTTTGACCATATGAAGATTATCTTGGATGCTACCTAGCAGGCTGTACCACAGGAT GACTGGACAGGAACAAGATCTGCACTTCAATAATTCGAGATGGGTGTGCAATGGCAGGCGCCAGCGATTGTCATG CGACATTCTATCATACCCTGTCGCTGCTGTGTAATTTGAGTCTGCCATTAAACCAAGGCTATATAAAGTAGATGA CAGGCCACTCATTGCGAACACAGAAAAACCCAAACCAGGTTCTTTGGGGCGTGTGCTAGTCTTCTTACGAGGCAT ACCTTTTTTTGCATCTGTGCACAGGCCGACCAAGCCGATTGTTTACTCATGGACGAGCAGCACCCACCGCCTCCG CTGGAGTACAAATATTCCGGGGGACTGAGAAACGAATTGGGGACCAGCGAGCGGCTTAGTGGACTTGCGATTGCA GGAGAAGGCTCCGTATCGGCTGCAGCCCCATTCCGTCAGCACCAAGAGGATACCAATGCTACCGAGCCTGTCGAG GACCACCGAAAGACGTTGGAGGCACGTACTAAGGTAGATTCATGTATTATTACATTCAGAATGCAGTGTAACGGC CACCATCTGCTGAGCGAGCATTAGCTGATAGAAGGATAGCAGCGCAGGGTGAAACGAGCTTGTGAGAGATGTCGT CGTAATAAAATCAAAGTGCGCAAATCACAAGACACTGAGATAATATGACGAGAGTTTAGTGGTTGATGTTTCTGA CTAACGGGATTGGCTCCTAGTGTTCTCATACCTCGCCCTGCGAAGCGTGCCGGAAAGCCAGGAGTGCGTGCGTTC CTCAGTCGGATCGGCCGAGGGCGAACCGTCGTACTACGATCTGTACCAAAACACTAACAGAGAAGTTGCCAATCC ACGGGGCTTATGCAGACCAGCCATCCAATGACACCACAACAACGTATGGGGCTCACGCTAACGAATCCATGGAGG GACACCGATGGAGCGCGTCCGACATGGGCTGCGCTTCAGTTATCACCATCCCAAGAGAGAATGATGCTGAACGTG ACACACCCACTACGTGCCCTGTCGACATTACTTCTCGTGGGGAATGGAACGCAGTTGGAGATGATAGGAACAACA CTCTCCCATCTGAAACTGGCGTGAATGCAGGCTGGGGACCCCCATCCAGTGTGATCCCACTCCCGAACTCGTATA TGCCCGCAGACAACTTGGCAGAGCATCCTACGGCAGATGCATGGTACTCGATGCCGAGGACTACGGAGCCATGCT CGTGGGAGACGTTGCCCGAATCTTTCTGGGGTTGGACCTGGCCTCAATCCGAGTATCTGGCCGGGTCCGAGACCG ACGGTTTCTTACATCCGTCAATTCCTGTACAGCAGTCGGCAGGTTGGCCCTTTGGAAGCGAGGCTGAACAGCCTC AGTATGCAACCAGAAGCGGGATCATGCCCTTCTGGGTAGATCACTCACAGGAGCTGTTCCCTTTAGGTCCCTCAC CTGATCCACCGGAGCCTATTCCTTCGTCCGTCGCAGCCAGGTTGTCTTCTATGCCACCAGAGACTAGGCCACCAA ATATCCCAAATTTGTATCGTGTGCAGCAGGCCGAAGATGTCAGCTTGTCAATCCCAACTTTTGTCCCATTGCAAT TGCCTTCTTGGGATCCATTGGCGCCTGTTTCCGCAGCATTGCCCATGACAGACTTCCACCGCCGCAGCATGCATC AGGAACCATCTGCGCCCGTCCCCGTGCCGAACATCGAGTCGCTAGTACCCCCATGGCTATAG |