© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS100_1|g11659.t1 |
| Gene name | |
| Location | scaffold_320:1653..2202 |
| Strand | - |
| Gene length (bp) | 549 |
| Transcript length (bp) | 549 |
| Coding sequence length (bp) | 549 |
| Protein length (aa) | 183 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13374 | TPR_10 | Tetratricopeptide repeat | 5.9E-05 | 2 | 36 |
| PF13374 | TPR_10 | Tetratricopeptide repeat | 2.0E-12 | 37 | 77 |
| PF13374 | TPR_10 | Tetratricopeptide repeat | 6.2E-10 | 79 | 119 |
| PF13374 | TPR_10 | Tetratricopeptide repeat | 1.5E-09 | 121 | 162 |
| PF13424 | TPR_12 | Tetratricopeptide repeat | 1.6E-11 | 2 | 69 |
| PF13424 | TPR_12 | Tetratricopeptide repeat | 1.6E-07 | 64 | 109 |
| PF13424 | TPR_12 | Tetratricopeptide repeat | 1.5E-13 | 80 | 150 |
| PF13176 | TPR_7 | Tetratricopeptide repeat | 5.4E-04 | 41 | 67 |
| PF13176 | TPR_7 | Tetratricopeptide repeat | 2.1E-02 | 83 | 107 |
| PF07721 | TPR_4 | Tetratricopeptide repeat | 3.6E-01 | 82 | 103 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0042802 | identical protein binding | Yes |
| GO:0005515 | protein binding | Yes |
| GO:0005488 | binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 18 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g11659.t1 MLANAYSWYGHWKKAEQLQVQVMETSKIKLGEDHPNTLTSMANLASTYRNQGRWEKAEQLEVQVMEMRKIKLGED HPGTLASMANLALTFWNQGQWEKAEQLLMQVMETSKIKLGEDHPGTLTIMANLAFTWKSSGQYAAALELLKVSLA KQKQVLGLDHPDVSSNLQTLQQWETEELGTNR* |
| Coding | >Ani_SJS100_1|g11659.t1 ATGTTAGCAAATGCATACAGCTGGTACGGGCACTGGAAGAAGGCCGAGCAGCTCCAGGTGCAGGTGATGGAGACT AGCAAGATAAAGCTTGGCGAGGACCACCCCAACACGCTGACCAGTATGGCCAACCTGGCATCAACATACAGGAAC CAGGGCCGGTGGGAGAAGGCCGAGCAGCTTGAGGTCCAGGTGATGGAGATGCGCAAGATAAAGCTTGGCGAGGAC CACCCCGGCACGCTGGCCAGTATGGCCAACCTGGCATTAACATTTTGGAACCAGGGCCAGTGGGAGAAGGCCGAG CAGCTTTTAATGCAGGTGATGGAGACAAGCAAGATAAAGCTTGGCGAGGACCACCCCGGCACGCTGACCATTATG GCCAATCTTGCTTTTACCTGGAAATCTTCTGGTCAGTATGCTGCTGCTCTTGAGTTACTCAAAGTGTCATTAGCG AAGCAGAAACAAGTTCTAGGACTTGATCATCCCGACGTTTCGTCAAATCTACAGACCTTGCAGCAATGGGAGACC GAGGAATTAGGTACCAACAGGTAA |
| Transcript | >Ani_SJS100_1|g11659.t1 ATGTTAGCAAATGCATACAGCTGGTACGGGCACTGGAAGAAGGCCGAGCAGCTCCAGGTGCAGGTGATGGAGACT AGCAAGATAAAGCTTGGCGAGGACCACCCCAACACGCTGACCAGTATGGCCAACCTGGCATCAACATACAGGAAC CAGGGCCGGTGGGAGAAGGCCGAGCAGCTTGAGGTCCAGGTGATGGAGATGCGCAAGATAAAGCTTGGCGAGGAC CACCCCGGCACGCTGGCCAGTATGGCCAACCTGGCATTAACATTTTGGAACCAGGGCCAGTGGGAGAAGGCCGAG CAGCTTTTAATGCAGGTGATGGAGACAAGCAAGATAAAGCTTGGCGAGGACCACCCCGGCACGCTGACCATTATG GCCAATCTTGCTTTTACCTGGAAATCTTCTGGTCAGTATGCTGCTGCTCTTGAGTTACTCAAAGTGTCATTAGCG AAGCAGAAACAAGTTCTAGGACTTGATCATCCCGACGTTTCGTCAAATCTACAGACCTTGCAGCAATGGGAGACC GAGGAATTAGGTACCAACAGGTAA |
| Gene | >Ani_SJS100_1|g11659.t1 ATGTTAGCAAATGCATACAGCTGGTACGGGCACTGGAAGAAGGCCGAGCAGCTCCAGGTGCAGGTGATGGAGACT AGCAAGATAAAGCTTGGCGAGGACCACCCCAACACGCTGACCAGTATGGCCAACCTGGCATCAACATACAGGAAC CAGGGCCGGTGGGAGAAGGCCGAGCAGCTTGAGGTCCAGGTGATGGAGATGCGCAAGATAAAGCTTGGCGAGGAC CACCCCGGCACGCTGGCCAGTATGGCCAACCTGGCATTAACATTTTGGAACCAGGGCCAGTGGGAGAAGGCCGAG CAGCTTTTAATGCAGGTGATGGAGACAAGCAAGATAAAGCTTGGCGAGGACCACCCCGGCACGCTGACCATTATG GCCAATCTTGCTTTTACCTGGAAATCTTCTGGTCAGTATGCTGCTGCTCTTGAGTTACTCAAAGTGTCATTAGCG AAGCAGAAACAAGTTCTAGGACTTGATCATCCCGACGTTTCGTCAAATCTACAGACCTTGCAGCAATGGGAGACC GAGGAATTAGGTACCAACAGGTAA |