© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS100_1|g11639.t1 |
| Gene name | |
| Location | scaffold_307:825..1725 |
| Strand | - |
| Gene length (bp) | 900 |
| Transcript length (bp) | 900 |
| Coding sequence length (bp) | 900 |
| Protein length (aa) | 300 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF12796 | Ank_2 | Ankyrin repeats (3 copies) | 1.3E-07 | 22 | 113 |
| PF12796 | Ank_2 | Ankyrin repeats (3 copies) | 5.2E-14 | 54 | 147 |
| PF12796 | Ank_2 | Ankyrin repeats (3 copies) | 3.3E-13 | 115 | 181 |
| PF12796 | Ank_2 | Ankyrin repeats (3 copies) | 2.0E-13 | 149 | 215 |
| PF12796 | Ank_2 | Ankyrin repeats (3 copies) | 4.0E-08 | 178 | 225 |
| PF13637 | Ank_4 | Ankyrin repeats (many copies) | 8.0E-11 | 85 | 136 |
| PF13637 | Ank_4 | Ankyrin repeats (many copies) | 3.7E-11 | 117 | 170 |
| PF13637 | Ank_4 | Ankyrin repeats (many copies) | 2.0E-14 | 152 | 204 |
| PF13857 | Ank_5 | Ankyrin repeats (many copies) | 6.9E-08 | 68 | 121 |
| PF13857 | Ank_5 | Ankyrin repeats (many copies) | 1.9E-11 | 107 | 157 |
| PF13857 | Ank_5 | Ankyrin repeats (many copies) | 1.0E-10 | 135 | 191 |
| PF13857 | Ank_5 | Ankyrin repeats (many copies) | 2.2E-07 | 187 | 222 |
| PF00023 | Ank | Ankyrin repeat | 8.8E-04 | 85 | 114 |
| PF00023 | Ank | Ankyrin repeat | 4.2E-06 | 115 | 148 |
| PF00023 | Ank | Ankyrin repeat | 2.6E-07 | 149 | 182 |
| PF00023 | Ank | Ankyrin repeat | 4.4E-08 | 183 | 216 |
| PF13606 | Ank_3 | Ankyrin repeat | 5.1E-07 | 115 | 144 |
| PF13606 | Ank_3 | Ankyrin repeat | 4.8E-07 | 183 | 212 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005515 | protein binding | Yes |
| GO:0005488 | binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 34 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 275 | 292 | 17 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g11639.t1 MGQENCDHDFTQDPSTPDACSHLAACEDHRVAATQLSRDNDADIDAGLGNIPFMWAAYEYPCVAVSKLLASGADA ASQDTDKFLALHIAAGKGYLLVVELLLQLPGIDVNAQDKHGSTALHEAAKNGRLPIVELLLQHRGTDVNRKDNYG CTALHEASDEGYLRVVELLLRRGRVDINAQDNDGWSALHIAAYKGHLAMVKLLLQHRGINVNLKDNHGRSALWFA KEERDTPIYYSLAGDPRLNDNEIIKPFGAPPHQCHTCSAMKVKTIAGDMLALFLLVAIFLAAAWVPTCDWPFSR* |
| Coding | >Ani_SJS100_1|g11639.t1 ATGGGCCAAGAAAACTGCGACCATGATTTTACGCAGGATCCTTCTACACCTGATGCATGCTCGCACTTAGCTGCC TGCGAAGACCATCGGGTAGCCGCTACACAGCTCTCTCGAGACAATGATGCCGACATTGATGCCGGACTGGGAAAT ATTCCTTTTATGTGGGCAGCCTACGAGTACCCTTGCGTTGCCGTTAGCAAGCTGCTTGCGTCCGGAGCAGATGCT GCATCCCAGGACACCGACAAGTTCCTCGCACTTCACATAGCAGCAGGAAAAGGATATTTGCTAGTTGTGGAGCTG CTCCTGCAACTTCCTGGAATTGATGTAAATGCGCAGGACAAACACGGGTCAACCGCTCTTCATGAAGCAGCAAAA AATGGACGTTTGCCAATTGTCGAGCTGCTCCTGCAACATCGTGGCACCGATGTCAATAGGAAGGACAATTACGGG TGCACCGCGCTTCATGAAGCGTCAGATGAAGGATATTTGCGAGTTGTGGAACTTCTCCTGCGACGAGGTAGGGTT GACATCAATGCACAAGACAACGACGGTTGGTCCGCACTTCACATAGCGGCATACAAAGGACATTTGGCAATGGTC AAGCTGCTCCTCCAACATCGTGGAATAAATGTCAATTTGAAGGACAATCACGGTCGGTCTGCTCTCTGGTTTGCA AAAGAGGAAAGAGACACGCCGATATACTACTCTCTCGCTGGCGACCCCCGGCTGAACGACAACGAAATAATCAAG CCGTTCGGCGCCCCACCACATCAATGTCACACCTGCTCCGCAATGAAAGTGAAAACGATCGCGGGAGATATGTTG GCACTGTTTTTGTTGGTTGCCATATTCCTTGCTGCCGCATGGGTTCCCACATGTGATTGGCCATTTAGTAGATAG |
| Transcript | >Ani_SJS100_1|g11639.t1 ATGGGCCAAGAAAACTGCGACCATGATTTTACGCAGGATCCTTCTACACCTGATGCATGCTCGCACTTAGCTGCC TGCGAAGACCATCGGGTAGCCGCTACACAGCTCTCTCGAGACAATGATGCCGACATTGATGCCGGACTGGGAAAT ATTCCTTTTATGTGGGCAGCCTACGAGTACCCTTGCGTTGCCGTTAGCAAGCTGCTTGCGTCCGGAGCAGATGCT GCATCCCAGGACACCGACAAGTTCCTCGCACTTCACATAGCAGCAGGAAAAGGATATTTGCTAGTTGTGGAGCTG CTCCTGCAACTTCCTGGAATTGATGTAAATGCGCAGGACAAACACGGGTCAACCGCTCTTCATGAAGCAGCAAAA AATGGACGTTTGCCAATTGTCGAGCTGCTCCTGCAACATCGTGGCACCGATGTCAATAGGAAGGACAATTACGGG TGCACCGCGCTTCATGAAGCGTCAGATGAAGGATATTTGCGAGTTGTGGAACTTCTCCTGCGACGAGGTAGGGTT GACATCAATGCACAAGACAACGACGGTTGGTCCGCACTTCACATAGCGGCATACAAAGGACATTTGGCAATGGTC AAGCTGCTCCTCCAACATCGTGGAATAAATGTCAATTTGAAGGACAATCACGGTCGGTCTGCTCTCTGGTTTGCA AAAGAGGAAAGAGACACGCCGATATACTACTCTCTCGCTGGCGACCCCCGGCTGAACGACAACGAAATAATCAAG CCGTTCGGCGCCCCACCACATCAATGTCACACCTGCTCCGCAATGAAAGTGAAAACGATCGCGGGAGATATGTTG GCACTGTTTTTGTTGGTTGCCATATTCCTTGCTGCCGCATGGGTTCCCACATGTGATTGGCCATTTAGTAGATAG |
| Gene | >Ani_SJS100_1|g11639.t1 ATGGGCCAAGAAAACTGCGACCATGATTTTACGCAGGATCCTTCTACACCTGATGCATGCTCGCACTTAGCTGCC TGCGAAGACCATCGGGTAGCCGCTACACAGCTCTCTCGAGACAATGATGCCGACATTGATGCCGGACTGGGAAAT ATTCCTTTTATGTGGGCAGCCTACGAGTACCCTTGCGTTGCCGTTAGCAAGCTGCTTGCGTCCGGAGCAGATGCT GCATCCCAGGACACCGACAAGTTCCTCGCACTTCACATAGCAGCAGGAAAAGGATATTTGCTAGTTGTGGAGCTG CTCCTGCAACTTCCTGGAATTGATGTAAATGCGCAGGACAAACACGGGTCAACCGCTCTTCATGAAGCAGCAAAA AATGGACGTTTGCCAATTGTCGAGCTGCTCCTGCAACATCGTGGCACCGATGTCAATAGGAAGGACAATTACGGG TGCACCGCGCTTCATGAAGCGTCAGATGAAGGATATTTGCGAGTTGTGGAACTTCTCCTGCGACGAGGTAGGGTT GACATCAATGCACAAGACAACGACGGTTGGTCCGCACTTCACATAGCGGCATACAAAGGACATTTGGCAATGGTC AAGCTGCTCCTCCAACATCGTGGAATAAATGTCAATTTGAAGGACAATCACGGTCGGTCTGCTCTCTGGTTTGCA AAAGAGGAAAGAGACACGCCGATATACTACTCTCTCGCTGGCGACCCCCGGCTGAACGACAACGAAATAATCAAG CCGTTCGGCGCCCCACCACATCAATGTCACACCTGCTCCGCAATGAAAGTGAAAACGATCGCGGGAGATATGTTG GCACTGTTTTTGTTGGTTGCCATATTCCTTGCTGCCGCATGGGTTCCCACATGTGATTGGCCATTTAGTAGATAG |