Fungal Genomics

at Utrecht University

General Properties

Protein IDAni_SJS100_1|g11597.t1
Gene name
Locationscaffold_288:3337..4868
Strand+
Gene length (bp)1531
Transcript length (bp)738
Coding sequence length (bp)738
Protein length (aa) 246

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00505 HMG_box HMG (high mobility group) box 2.0E-07 164 232

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 29 0.45

Transmembrane Domains

(None)

Transcription Factor Class

Transcription Factor Class
(based on PFAM domains)
HMG

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ani_SJS100_1|g11597.t1
MYLALRMARIGGAWRSASHPVPVPEVAADNPYSVVPQPVKSFPTPPQLEDAVYQLGKYSCLQMCDRTQAHANTLI
PEKGADADQTKSEPLRRHSRLRRSNRAVAMIRNDRDDYTAISRQDLDLPCLLSALTTGIQHIPVRDICAWAHRPV
ETRRQEARQRQGRIPRPPNPFMLYRLAYSDRAKHWLAQNDDRAISILTGRSWTMEALHIRKKYKTLAVTEKQMHA
GAHPGYRFSPSTKKRRSQTA*
Coding >Ani_SJS100_1|g11597.t1
ATGTATCTTGCACTGCGAATGGCTAGGATTGGTGGAGCCTGGAGATCAGCAAGTCATCCTGTCCCTGTGCCAGAG
GTTGCGGCCGATAACCCATACTCTGTGGTGCCACAGCCGGTGAAATCCTTTCCCACTCCGCCTCAGCTGGAAGAC
GCGGTGTACCAACTGGGTAAATACTCGTGTCTGCAGATGTGTGATAGAACCCAAGCCCACGCAAACACGCTGATC
CCAGAAAAGGGCGCCGACGCGGACCAGACGAAATCAGAGCCTCTGCGCCGGCACAGCAGACTCCGGCGGTCGAAT
CGCGCTGTAGCCATGATAAGGAACGACCGAGACGACTACACAGCGATCAGCAGGCAAGATCTGGACTTGCCATGT
CTGCTGAGTGCACTGACCACCGGCATTCAGCACATCCCGGTTAGAGACATTTGCGCCTGGGCACACCGTCCCGTC
GAGACGCGCCGCCAGGAGGCACGCCAACGGCAGGGCAGAATCCCACGTCCGCCGAACCCATTCATGCTGTACCGG
TTGGCTTACAGCGATCGAGCAAAGCACTGGCTTGCACAGAATGATGATCGAGCCATCTCCATCCTCACAGGACGG
AGCTGGACGATGGAAGCCCTCCACATTCGAAAAAAGTACAAGACGCTCGCAGTGACGGAGAAACAAATGCATGCT
GGAGCGCACCCGGGATATCGGTTCTCGCCGTCAACCAAGAAGAGACGATCGCAGACCGCATGA
Transcript >Ani_SJS100_1|g11597.t1
ATGTATCTTGCACTGCGAATGGCTAGGATTGGTGGAGCCTGGAGATCAGCAAGTCATCCTGTCCCTGTGCCAGAG
GTTGCGGCCGATAACCCATACTCTGTGGTGCCACAGCCGGTGAAATCCTTTCCCACTCCGCCTCAGCTGGAAGAC
GCGGTGTACCAACTGGGTAAATACTCGTGTCTGCAGATGTGTGATAGAACCCAAGCCCACGCAAACACGCTGATC
CCAGAAAAGGGCGCCGACGCGGACCAGACGAAATCAGAGCCTCTGCGCCGGCACAGCAGACTCCGGCGGTCGAAT
CGCGCTGTAGCCATGATAAGGAACGACCGAGACGACTACACAGCGATCAGCAGGCAAGATCTGGACTTGCCATGT
CTGCTGAGTGCACTGACCACCGGCATTCAGCACATCCCGGTTAGAGACATTTGCGCCTGGGCACACCGTCCCGTC
GAGACGCGCCGCCAGGAGGCACGCCAACGGCAGGGCAGAATCCCACGTCCGCCGAACCCATTCATGCTGTACCGG
TTGGCTTACAGCGATCGAGCAAAGCACTGGCTTGCACAGAATGATGATCGAGCCATCTCCATCCTCACAGGACGG
AGCTGGACGATGGAAGCCCTCCACATTCGAAAAAAGTACAAGACGCTCGCAGTGACGGAGAAACAAATGCATGCT
GGAGCGCACCCGGGATATCGGTTCTCGCCGTCAACCAAGAAGAGACGATCGCAGACCGCATGA
Gene >Ani_SJS100_1|g11597.t1
ATGTATCTTGCACTGCGAATGGCTAGGATTGGTGGAGCCTGGAGATCAGCAAGTCATGTAGCTGCTGTTCGACAT
GCCTCCATTGGGCCATCGGAGCCCTCCCCTCCCACCTAAGCTTGTTGCCCAATCCGCCTGCCACGGTCCTTCATC
TCTGGCGGTGGATCTGTTCAGGTCACTCTCACCATTGCCGGGGTACACTGATACCGACTCATTCTACCCCAATCA
GGATACTGTACCCTTCTCGTCTTCGTCCGTAACTAGTACGTCGTTAGGTCGGTAGGGGCTCTTAGGTGTCAGTAG
ATTAGGTCCCACCAGCTGCGATCTGGAAGGATCCAACTAATGATTCAGGGTGAGCAAACTATAGCTGTAGTGTTC
GTGGCCAACTTAGTATGAAAACCCCCCTATTCATACCTCCTCTCCATAAGACCTCGAGACTGCGGTTGTGGTCCA
TCCTGATATCAACGTGCGCTCGCTCACCACGTCACTGTTTGGTCACTGACATTTGAATCATCACTCTGCCACTTG
AGGCGGATGCTGCCGGTCTAGTTTAGTGAGAGCATGTCCGAACCATCTGCGGCCATATCTGGCTCCACGCCCAAG
GAAACTGGGACAGAAATATCATCTTTTGTGCCAACCGCATCAAGAGGCCTGATGTCTCTCCCACCACACCCATTT
TCCAGCCGAGAATCGTGCTTAATACCACTCGTGAGGATCTCAGGCAGCACCTCCCAAGCACGTCGTATGGTCTTC
CCCAAGTTTTTGGGGAATATACTGCGGTAGGCGTGCACGGCAAATCTTGAACCAGGAACTGCTCAGTCTCATACT
CCGATGTTCCTAGAGCTTCGATCAGCCTGTCCCTGTGCCAGAGGTTGCGGCCGATAACCCATACTCTGTGGTGCC
ACAGCCGGTGAAATCCTTTCCCACTCCGCCTCAGCTGGAAGACGCGGTGTACCAACTGGGTAAATACTCGTGTCT
GCAGATGTGTGATAGAACCCAAGCCCACGCAAACACGCTGATCCCAGAAAAGGGCGCCGACGCGGACCAGACGAA
ATCAGAGCCTCTGCGCCGGCACAGCAGACTCCGGCGGTCGAATCGCGCTGTAGCCATGATAAGGAACGACCGAGA
CGACTACACAGCGATCAGCAGGCAAGATCTGGACTTGCCATGTCTGCTGAGTGCACTGACCACCGGCATTCAGCA
CATCCCGGTTAGAGACATTTGCGCCTGGGCACACCGTCCCGTCGAGACGCGCCGCCAGGAGGCACGCCAACGGCA
GGGCAGAATCCCACGTCCGCCGAACCCATTCATGCTGTACCGGTTGGCTTACAGCGATCGAGCAAAGCACTGGCT
TGCACAGAATGATGATCGAGCCATCTCCATCCTCACAGGACGGAGCTGGACGATGGAAGCCCTCCACATTCGAAA
AAAGTACAAGACGCTCGCAGTGACGGAGAAACAAATGCATGCTGGAGCGCACCCGGGATATCGGTTCTCGCCGTC
AACCAAGAAGAGACGATCGCAGACCGCATGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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