Protein ID | Ani_SJS100_1|g11470.t1 |
Gene name | |
Location | scaffold_236:4038..8070 |
Strand | + |
Gene length (bp) | 4032 |
Transcript length (bp) | 1971 |
Coding sequence length (bp) | 1971 |
Protein length (aa) | 657 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF04479 | RTA1 | RTA1 like protein | 7.7E-37 | 449 | 585 |
GO Term | Description | Terminal node |
---|---|---|
GO:0016021 | integral component of membrane | Yes |
GO:0005575 | cellular_component | No |
GO:0110165 | cellular anatomical entity | No |
GO:0031224 | intrinsic component of membrane | No |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
Yes | 1 - 19 | 0.45 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 417 | 436 | 19 |
2 | 443 | 462 | 19 |
3 | 477 | 499 | 22 |
4 | 520 | 542 | 22 |
5 | 552 | 574 | 22 |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ani_SJS100_1|g11470.t1 MHDLKLLLVSGLVLSAEAVASYLYIPPLYHNGSVKVEDLSVAGNLDGPKMRTAANHTSFDFWYFDAFSTSTPAAI NVVFYNTGDFAANPNPLAVQVSGTFDNGTQFSGQVLASKGVIFDQDDNGIFASWEGTGAAFRGSSLDKSSPEYII RFDSPGIGVKGDIRLKSRAPPHYPCNPNIAQMNTLLLPHLHWANAIPDATATVDLQINGTDFHITKGVGYHDKNW GDASVITSPKYWDWGHAQLGPYSIVWYDLLDYNDKEHSYAYVAKNGRVVTVGCADNAVKVRQVGMNATYPPTGGI PQAQGLTANFDLGGGQVFAVNLTKEVIVHNEVVYARALGSVTGGIVGQETYTGRAMYEEYISVAEAIFKVAGKTW LLPRPGDLHLAPSMYEYGYGYGYENPLFAMGDYSFYNYNPSLAAAIVALLCYGASTGFHCFQLFKLRCWFFTTFI AGAIMMTIGYLFRAISTKDTSALGPYVGQNVCILLPPSLYAATIYMIYGRIVMFARSASLSPIAPQKVTKIFVIG DVIAFLTQASGGGMMAMESMASAGQKLTIFGLFVQLFFFGGFFTISVVFCRRMQQQKNVRMRDVPRGVQAGRETA RSVNVILPLKEEPQCSRRQIMPKACNNCPDTANMDYPVRQSAVLIVQNTGTVVRCA* |
Coding | >Ani_SJS100_1|g11470.t1 ATGCATGACCTAAAATTACTCTTGGTTTCGGGGCTTGTTCTTTCCGCAGAGGCCGTGGCCTCCTACCTGTACATT CCTCCTCTATATCATAATGGGAGCGTCAAAGTGGAAGACCTCTCTGTGGCTGGAAACCTGGATGGACCCAAGATG AGGACCGCCGCTAATCATACCTCCTTTGACTTTTGGTACTTCGACGCCTTCTCTACATCTACTCCTGCAGCGATC AATGTCGTGTTCTACAACACAGGAGACTTTGCAGCGAATCCAAATCCTCTTGCTGTTCAAGTATCCGGCACCTTT GATAACGGCACCCAGTTCTCCGGTCAAGTACTCGCGTCCAAAGGTGTCATATTCGACCAGGACGATAATGGCATC TTTGCGAGCTGGGAAGGGACTGGTGCAGCCTTCCGTGGATCAAGTCTCGATAAATCGAGTCCTGAATATATCATT AGGTTTGATTCTCCTGGTATTGGTGTTAAGGGTGACATCCGCCTGAAATCGCGAGCCCCTCCTCACTACCCCTGC AATCCAAACATCGCGCAAATGAATACCCTCCTCCTCCCGCACCTCCACTGGGCGAACGCCATCCCAGATGCCACC GCCACTGTAGACCTACAAATCAACGGAACTGACTTCCACATTACTAAAGGAGTCGGCTACCATGACAAGAACTGG GGTGATGCTTCTGTTATCACCAGCCCAAAATACTGGGACTGGGGCCACGCCCAACTCGGCCCTTACTCGATTGTC TGGTACGATCTTCTCGATTACAATGACAAGGAGCACTCGTACGCATACGTTGCCAAAAATGGAAGAGTGGTTACA GTAGGTTGTGCGGATAATGCCGTCAAGGTGCGCCAGGTTGGCATGAATGCCACGTACCCTCCTACCGGGGGTATT CCTCAAGCACAAGGATTGACGGCCAATTTTGATCTTGGTGGGGGGCAAGTGTTTGCAGTAAATTTGACAAAGGAG GTTATTGTTCATAACGAAGTCGTGTATGCGCGGGCTTTGGGGTCCGTCACAGGGGGGATTGTTGGCCAGGAGACC TACACAGGCCGGGCTATGTATGAGGAATATATTTCAGTAGCGGAAGCAATATTCAAAGTTGCCGGTAAAACGTGG TTGTTACCAAGACCCGGTGATCTGCATCTCGCACCATCAATGTACGAGTACGGCTACGGCTACGGCTACGAGAAC CCGCTCTTCGCCATGGGTGATTACAGTTTCTACAACTACAACCCGAGCCTCGCGGCAGCCATTGTCGCGCTTCTC TGCTACGGGGCCAGTACAGGATTCCACTGTTTCCAGCTCTTCAAACTGCGATGCTGGTTTTTCACAACATTCATT GCCGGAGCCATAATGATGACAATCGGCTACCTCTTCCGCGCGATATCTACCAAGGATACGAGTGCCCTAGGCCCA TACGTAGGCCAGAACGTGTGCATTCTCCTTCCTCCATCCCTCTACGCAGCCACCATCTACATGATCTACGGCCGC ATTGTCATGTTCGCCCGCTCTGCCTCCCTCTCCCCTATCGCGCCGCAAAAGGTCACCAAAATATTCGTTATAGGC GATGTAATTGCTTTCCTGACACAGGCCAGTGGTGGCGGTATGATGGCTATGGAAAGCATGGCTAGTGCGGGTCAG AAGCTTACGATTTTTGGTCTGTTCGTACAGCTGTTCTTTTTCGGCGGGTTCTTCACTATCTCGGTGGTCTTTTGT CGTCGAATGCAACAACAGAAGAATGTCCGCATGCGAGACGTTCCTAGGGGCGTTCAGGCTGGCCGCGAGACCGCG AGGTCCGTCAACGTGATCTTGCCGCTGAAGGAGGAGCCGCAGTGCTCCCGAAGACAGATCATGCCAAAAGCATGC AATAATTGCCCGGACACCGCGAATATGGACTATCCAGTGCGCCAGAGTGCCGTCCTGATTGTACAGAATACTGGG ACGGTTGTAAGATGTGCCTAG |
Transcript | >Ani_SJS100_1|g11470.t1 ATGCATGACCTAAAATTACTCTTGGTTTCGGGGCTTGTTCTTTCCGCAGAGGCCGTGGCCTCCTACCTGTACATT CCTCCTCTATATCATAATGGGAGCGTCAAAGTGGAAGACCTCTCTGTGGCTGGAAACCTGGATGGACCCAAGATG AGGACCGCCGCTAATCATACCTCCTTTGACTTTTGGTACTTCGACGCCTTCTCTACATCTACTCCTGCAGCGATC AATGTCGTGTTCTACAACACAGGAGACTTTGCAGCGAATCCAAATCCTCTTGCTGTTCAAGTATCCGGCACCTTT GATAACGGCACCCAGTTCTCCGGTCAAGTACTCGCGTCCAAAGGTGTCATATTCGACCAGGACGATAATGGCATC TTTGCGAGCTGGGAAGGGACTGGTGCAGCCTTCCGTGGATCAAGTCTCGATAAATCGAGTCCTGAATATATCATT AGGTTTGATTCTCCTGGTATTGGTGTTAAGGGTGACATCCGCCTGAAATCGCGAGCCCCTCCTCACTACCCCTGC AATCCAAACATCGCGCAAATGAATACCCTCCTCCTCCCGCACCTCCACTGGGCGAACGCCATCCCAGATGCCACC GCCACTGTAGACCTACAAATCAACGGAACTGACTTCCACATTACTAAAGGAGTCGGCTACCATGACAAGAACTGG GGTGATGCTTCTGTTATCACCAGCCCAAAATACTGGGACTGGGGCCACGCCCAACTCGGCCCTTACTCGATTGTC TGGTACGATCTTCTCGATTACAATGACAAGGAGCACTCGTACGCATACGTTGCCAAAAATGGAAGAGTGGTTACA GTAGGTTGTGCGGATAATGCCGTCAAGGTGCGCCAGGTTGGCATGAATGCCACGTACCCTCCTACCGGGGGTATT CCTCAAGCACAAGGATTGACGGCCAATTTTGATCTTGGTGGGGGGCAAGTGTTTGCAGTAAATTTGACAAAGGAG GTTATTGTTCATAACGAAGTCGTGTATGCGCGGGCTTTGGGGTCCGTCACAGGGGGGATTGTTGGCCAGGAGACC TACACAGGCCGGGCTATGTATGAGGAATATATTTCAGTAGCGGAAGCAATATTCAAAGTTGCCGGTAAAACGTGG TTGTTACCAAGACCCGGTGATCTGCATCTCGCACCATCAATGTACGAGTACGGCTACGGCTACGGCTACGAGAAC CCGCTCTTCGCCATGGGTGATTACAGTTTCTACAACTACAACCCGAGCCTCGCGGCAGCCATTGTCGCGCTTCTC TGCTACGGGGCCAGTACAGGATTCCACTGTTTCCAGCTCTTCAAACTGCGATGCTGGTTTTTCACAACATTCATT GCCGGAGCCATAATGATGACAATCGGCTACCTCTTCCGCGCGATATCTACCAAGGATACGAGTGCCCTAGGCCCA TACGTAGGCCAGAACGTGTGCATTCTCCTTCCTCCATCCCTCTACGCAGCCACCATCTACATGATCTACGGCCGC ATTGTCATGTTCGCCCGCTCTGCCTCCCTCTCCCCTATCGCGCCGCAAAAGGTCACCAAAATATTCGTTATAGGC GATGTAATTGCTTTCCTGACACAGGCCAGTGGTGGCGGTATGATGGCTATGGAAAGCATGGCTAGTGCGGGTCAG AAGCTTACGATTTTTGGTCTGTTCGTACAGCTGTTCTTTTTCGGCGGGTTCTTCACTATCTCGGTGGTCTTTTGT CGTCGAATGCAACAACAGAAGAATGTCCGCATGCGAGACGTTCCTAGGGGCGTTCAGGCTGGCCGCGAGACCGCG AGGTCCGTCAACGTGATCTTGCCGCTGAAGGAGGAGCCGCAGTGCTCCCGAAGACAGATCATGCCAAAAGCATGC AATAATTGCCCGGACACCGCGAATATGGACTATCCAGTGCGCCAGAGTGCCGTCCTGATTGTACAGAATACTGGG ACGGTTGTAAGATGTGCCTAG |
Gene | >Ani_SJS100_1|g11470.t1 ATGCATGACCTAAAATTACTCTTGGTTTCGGGGCTTGTTCTTTCCGCAGAGGCCGTGGCCTCCTACCTGTACATT CCTCCTCTATATCATAATGGGAGCGTCAAAGTGGAAGACCTCTCTGTGGCTGGAAACCTGGATGGACCCAAGATG AGGACCGCCGCTAATCATACCTCCTTTGACTTTTGGTACTTCGACGCCTTCTCTACATCTACTCCTGCAGCGATC AATGTCGTGTTCTACAACACAGGAGACTTTGCAGCGAATCCAAATCCTCTTGCTGTTCAAGTATCCGGCACCTTT GATAACGGCACCCAGTTCTCCGGTCAAGTACTCGCGTCCAAAGGTGTCATATTCGACCAGGACGATAATGGCATC TTTGCGAGCTGGGAAGGGACTGGTGCAGCCTTCCGTGGATCAAGTCTCGATAAATCGAGTCCTGAATATATCATT AGGTTTGATTCTCCTGGTATTGGTGTTAAGGGTGACATCCGCCTGAAATCGGTATGGTCATTATCCCCCTATCAC CACCGACAATGTCTTTTTCTCTCATTCTTCCAGGACAAGTACTAATTCATTTCATCTTGTTACGCAGCGAGCCCC TCCTCACTACCCCTGCAATCCAAACATCGCGCAAATGAATACCCTCCTCCTCCCGCACCTCCACTGGGCGAACGC CATCCCAGATGCCACCGCCACTGTAGACCTACAAATCAACGGAACTGACTTCCACATTACTAAAGGAGTCGGCTA CCATGACAAGAACTGGGGTGATGCTTCTGTTATCACCAGCCCAAAATACTGGGACTGGGGCCACGCCCAACTCGG CCCTTACTCGATTGTCTGGTACGATCTTCTCGATTACAATGACAAGGAGCACTCGTACGCATACGTTGCCAAAAA TGGAAGAGTGGTTACAGTAGGTTGTGCGGATAATGCCGTCAAGGTGCGCCAGGTTGGCATGAATGCCACGTACCC TCCTACCGGGGGTATTCCTCAAGCACAAGGATTGACGGCCAATTTTGATCTTGGTGGGGGGCAAGTGTTTGCAGT AAATTTGACAAAGGAGGTTATTGTTCATAACGAAGTCGTGTATGCGCGGGCTTTGGGGTCCGTCACAGGGGGGAT TGTTGGCCAGGAGACCTACACAGGCCGGGCTATGTATGAGGAATATATGTATGGGCTTCTGTTTGGCTGAGTTGA GGGTTTTGGGAGACAGTGGAGCTTAATTGGGGTATAACATCGGTCAGCATCTATCACATGTATCTAGGTTGTTAT ATAGCTGCAGCTTCGCTGGATAGAGTGATTGGGTAGGAGATACCGATTCTTGGGTCTGATGGGCTGACTCCGTCA TTATATGTCGTGATAATCGTCATAGATATATGTAGAGGTAACAGTATTGACTTGTTTGGATGGAAGGAGAAGCGT TGTTTCTGCGTAGCATTAGCATCTTGGTAAACAGATGGTGGCACGACGCACTCCAACGTTGATAGACCATTAATT ACAGGTGAGGAAACTTACTAGATGATGAAGAAATAGAAACTGGGTGCTGGGTTGAGACAATTAGCATATGTGACA TCAGGAGTTGGGTATTTTAGGGTGTTTTATTAGAGATCCTTGAATTATTAGTTTCAGTACTAGTCTGCTGAAATT GTTTTTTTTTTAAAAAAATAAAAAAAAATAAAAGGGGGAATCTCATCGTGGTTAATAAGATGGAAAGGGGTTGAT CATGAGTACTTCAGATCACGCCGAGCTGTGATCCCAGGGTCCACATACACTGTTCTCACACATTTGCACAAGTTG TGGCTATGGCGATGCTCTTAGGTGTTTTGACCCACCAATGACCCACCACCCGCACAAGTACGAGTACGTAGACAA TGCAATTGGTTCAATTCGAATTTTCTGGGCAACTCAATCCTCCTGACCCCCGAACCCCAACTTCTATTCATCTCT AAACCCTGGTTGGAAAGTTTCAGTTCAGTAGCGGAAGCAATATTCAAAGTTGCCGGTAAAACGTGGTTGTTACCA AGACCCGGTGATCTGCATCTCGCACCATCAATGTACGAGTACGGCTACGGCTACGGCTACGAGTACATTATGATT GGCTGGATAGTACTAGCGTGTGAAATCTATCCTGAATTAAGAATGATATCTCCGACAGTAGGAAAAAAAAGCTAG AGAAATCTAAGCCCACGATTCTGATCGGGTGGGGGGTGATGGCGATTATTTCCAGCGTCCATCAAAAAGCATTAA TATAAGTATCGCCCACGCAGTATGGCCGGACACTGGACAGGTTAGCATGTCACTAGTCATCTAGGAACCCGCTCT TCGCCATGGGTGATTACAGTTTCTACAACTACAACCCGAGCCTCGCGGCAGCCATTGTCGCGCTTCTCTGCTACG GGGCCAGTACAGGATTCCACTGTTTCCAGCTCTTCAAACTGCGATGCTGGTTTTTCACAACATTCATTGCCGGAG CCATAAGTGAGTCGACTCCCATGTTTTGATCCCAATTTCCATAAAGCTCCACAGGAAGGAACTTACCTCCTACAC AGTGATGACAATCGGCTACCTCTTCCGCGCGATATCTACCAAGGATACGAGTGCCCTAGGCCCATACGTAGGCCA GAACGTGTGCATTCTCCTTCCTCCATCCCTCTACGCAGCCACCATCTACATGATCTACGGCCGCATTGTCATGTT CGCCCGCTCTGCCTCCCTCTCCCCTATCGCGCCGCAAAAGGTCACCAAAATATTCGTTATAGGCGATGTAATTGC TTTCCTGACACAGGCCAGTGGTGGCGGTATGATGGCTATGGAAAGCATGGCTAGTGCGGGTCAGAAGCTTACGAT TTTTGGTCTGTTCGTACAGCTGTTCTTTTTCGGCGGGTTCTTCACTATCTCGGTGGTCTTTTGTCGTCGAATGCA ACAACAGAAGAATGTCCGCATGCGAGACGTTCCGTATGGTGCGTTGCTTTACGTTTTATTTGGGGTCTCGGGGCT CATCATCGTTCGGTGTCTATATCGCGTTGTGGAGTTTTGTCAGGGAAATGATGGCTATTTGATAAGTCATGAGGT TTTCATGTATTTGTTCGACACATTGTTGATGTTCGTGGTACAGGTTGTTTTTCATTTTTATCACCCTGGACTGCT TCTTGGGGACGGGAAGTATGGTGGGTTGGAGATGGAAGGATAGTAGTACTCAAGATTTGGAAATTACAGCCATGG CGAAGGAGACAGATATTAGAATCCGTTTCTTCAGCCTACAGTTAATACATTCTTGGAAAGTCTAAGTTCCAGTCT ACGAGCAATAATGCTGTGCAGATTCTGAGAAATCGGATGTTGCTGATTTGTATACCCACAATGATTTAAAGAAAC TTGAAATGATATCATACAATGAGACGTGGTCCAGATATATCTACCCAGTACAGTTCCATATATCTGTGGTCTGAC ATAAGAGAGAAGTATTTGAGAGAGAGTCGCGTTTCAGTCCTGCCCATCCGTGCACAGTCCCAATCCATCCATTGG CCAATGTAAACAGCTTCGCCAAGATGAGTCCAGCGAACCATATATTTCCCGTATCATCTTCTCCGGCCATGTCCC AATCCAATATGCTGGCTCACTTGACTTCAGCAGGACGCATGCATGGGCGAAGATAACAAGAGCAAATGGATCCCG GCCACCCAATAAAGTCGCAAATTCGTTGTCACAATGTGACAGCCAACCGAAGAACGCCGATCCACCCATTTTAGA CCAGCTGAGTAACTTACTCACCGCTTGTAGTAGGGTATGGACACTGTTCATGGTTACTGTGCTCCGCCGTATTTG GTCGGCTAGGGCGTTCAGGCTGGCCGCGAGACCGCGAGGTCCGTCAACGTGATCTTGCCGCTGAAGGAGGAGCCG CAGTGCTCCCGAAGACAGATCATGCCAAAAGCATGCAATAATTGCCCGGACACCGCGAATATGGACTATCCAGTG CGCCAGAGTGCCGTCCTGATTGTACAGAATACTGGGACGGTTGTAAGATGTGCCTAG |