Fungal Genomics

at Utrecht University

General Properties

Protein IDAni_SJS100_1|g11341.t1
Gene name
Locationscaffold_193:12821..13172
Strand+
Gene length (bp)351
Transcript length (bp)351
Coding sequence length (bp)351
Protein length (aa) 117

Your browser does not support drawing a protein figure.

PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00075 RNase_H RNase H 6.1E-07 54 106

GO

GO Term Description Terminal node
GO:0004523 RNA-DNA hybrid ribonuclease activity Yes
GO:0003676 nucleic acid binding Yes
GO:0140098 catalytic activity, acting on RNA No
GO:0003674 molecular_function No
GO:0004518 nuclease activity No
GO:0004521 endoribonuclease activity No
GO:0097159 organic cyclic compound binding No
GO:0004540 ribonuclease activity No
GO:1901363 heterocyclic compound binding No
GO:0005488 binding No
GO:0140640 catalytic activity, acting on a nucleic acid No
GO:0016788 hydrolase activity, acting on ester bonds No
GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters No
GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters No
GO:0016787 hydrolase activity No
GO:0004519 endonuclease activity No
GO:0003824 catalytic activity No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 22 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ani_SJS100_1|g11341.t1
MTNWSVHAAEVIGIFYAISLALKTARPGPTTATPPENETATILCDNTALQAIRNPRNKSGQRIIYAILQAASELK
ARGIPLRLQWIPGHSDIPGNDAADKLAKRAVGPDKMQLPTA*
Coding >Ani_SJS100_1|g11341.t1
ATGACAAATTGGTCGGTCCATGCGGCGGAGGTTATCGGCATTTTCTACGCTATCAGCCTCGCCCTCAAAACAGCA
AGGCCGGGGCCGACAACCGCGACACCGCCAGAGAACGAAACGGCAACAATCCTCTGCGACAACACAGCACTACAG
GCGATCAGGAACCCACGGAACAAGTCAGGACAGCGGATTATTTACGCCATCTTGCAGGCTGCCTCAGAACTGAAA
GCGCGAGGCATTCCCCTCCGCCTCCAGTGGATCCCGGGGCACAGTGATATTCCTGGCAACGATGCAGCAGACAAG
CTAGCCAAACGAGCAGTTGGCCCGGATAAGATGCAGCTTCCAACCGCCTAG
Transcript >Ani_SJS100_1|g11341.t1
ATGACAAATTGGTCGGTCCATGCGGCGGAGGTTATCGGCATTTTCTACGCTATCAGCCTCGCCCTCAAAACAGCA
AGGCCGGGGCCGACAACCGCGACACCGCCAGAGAACGAAACGGCAACAATCCTCTGCGACAACACAGCACTACAG
GCGATCAGGAACCCACGGAACAAGTCAGGACAGCGGATTATTTACGCCATCTTGCAGGCTGCCTCAGAACTGAAA
GCGCGAGGCATTCCCCTCCGCCTCCAGTGGATCCCGGGGCACAGTGATATTCCTGGCAACGATGCAGCAGACAAG
CTAGCCAAACGAGCAGTTGGCCCGGATAAGATGCAGCTTCCAACCGCCTAG
Gene >Ani_SJS100_1|g11341.t1
ATGACAAATTGGTCGGTCCATGCGGCGGAGGTTATCGGCATTTTCTACGCTATCAGCCTCGCCCTCAAAACAGCA
AGGCCGGGGCCGACAACCGCGACACCGCCAGAGAACGAAACGGCAACAATCCTCTGCGACAACACAGCACTACAG
GCGATCAGGAACCCACGGAACAAGTCAGGACAGCGGATTATTTACGCCATCTTGCAGGCTGCCTCAGAACTGAAA
GCGCGAGGCATTCCCCTCCGCCTCCAGTGGATCCCGGGGCACAGTGATATTCCTGGCAACGATGCAGCAGACAAG
CTAGCCAAACGAGCAGTTGGCCCGGATAAGATGCAGCTTCCAACCGCCTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail