© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS100_1|g11308.t1 |
| Gene name | |
| Location | scaffold_186:2885..3713 |
| Strand | + |
| Gene length (bp) | 828 |
| Transcript length (bp) | 828 |
| Coding sequence length (bp) | 828 |
| Protein length (aa) | 276 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00075 | RNase_H | RNase H | 1.1E-10 | 33 | 176 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0004523 | RNA-DNA hybrid ribonuclease activity | Yes |
| GO:0003676 | nucleic acid binding | Yes |
| GO:0140098 | catalytic activity, acting on RNA | No |
| GO:0003674 | molecular_function | No |
| GO:0004518 | nuclease activity | No |
| GO:0004521 | endoribonuclease activity | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0004540 | ribonuclease activity | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:0140640 | catalytic activity, acting on a nucleic acid | No |
| GO:0016788 | hydrolase activity, acting on ester bonds | No |
| GO:0016893 | endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters | No |
| GO:0016891 | endoribonuclease activity, producing 5'-phosphomonoesters | No |
| GO:0016787 | hydrolase activity | No |
| GO:0004519 | endonuclease activity | No |
| GO:0003824 | catalytic activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 43 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 73 | 95 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g11308.t1 MCAMAEPAHCGNRDRTRSGESAGQRAGTQSSTSITVFSDASGKGNKLGAAAVAFAHNQQITGSQLISIGSMEYWS VYAADLMAIFYAISLVLQVAQKRQGRLDRVKQHATILSDSMSALQAIRNLSNKSDRRIIRAILQAASEMKARGLP IRLQWVPGHCDDSGNHEADRLAKEAVGPKKMHPFQFLLSREIDFIRKRILNEWKDEWTKSTKGRHLRQITEPCRQ SVSEDCTDRSLGIEHICLHNFGWVTLGWQHTGNNAVFRSTTGVFVELARR* |
| Coding | >Ani_SJS100_1|g11308.t1 ATGTGCGCCATGGCGGAACCAGCCCATTGCGGAAATCGCGATCGAACCCGATCGGGAGAAAGCGCAGGCCAACGC GCGGGTACACAATCCTCAACCAGTATCACGGTCTTCTCTGATGCTTCAGGAAAAGGGAATAAACTAGGGGCCGCA GCAGTAGCTTTTGCTCACAACCAGCAGATAACAGGGTCCCAACTGATCAGTATCGGCTCAATGGAATATTGGTCA GTCTACGCAGCCGATCTCATGGCAATCTTCTACGCCATCAGCCTGGTCCTTCAAGTAGCCCAGAAAAGGCAAGGC CGTTTAGACAGAGTGAAACAACACGCAACCATTTTAAGCGACAGCATGTCAGCGCTACAAGCAATTCGTAACCTG TCCAACAAGTCCGACCGGCGAATCATCCGAGCCATCCTGCAGGCAGCCTCCGAAATGAAAGCGCGAGGGCTTCCC ATTCGCCTCCAATGGGTGCCGGGGCATTGTGACGACTCTGGAAACCACGAGGCCGACCGACTGGCAAAGGAAGCG GTCGGCCCGAAGAAAATGCACCCCTTTCAGTTCCTTCTCTCGCGAGAAATTGACTTCATCCGGAAGAGAATTTTA AACGAGTGGAAGGATGAGTGGACTAAATCTACAAAGGGAAGGCACCTCCGCCAGATCACAGAACCCTGCCGGCAA TCCGTATCCGAAGACTGTACGGATCGCTCCCTCGGAATCGAACATATCTGCTTGCACAACTTCGGATGGGTCACT CTTGGCTGGCAACATACCGGAAACAACGCGGTTTTCAGGTCGACGACAGGTGTGTTTGTGGAGCTCGCGAGACGG TAG |
| Transcript | >Ani_SJS100_1|g11308.t1 ATGTGCGCCATGGCGGAACCAGCCCATTGCGGAAATCGCGATCGAACCCGATCGGGAGAAAGCGCAGGCCAACGC GCGGGTACACAATCCTCAACCAGTATCACGGTCTTCTCTGATGCTTCAGGAAAAGGGAATAAACTAGGGGCCGCA GCAGTAGCTTTTGCTCACAACCAGCAGATAACAGGGTCCCAACTGATCAGTATCGGCTCAATGGAATATTGGTCA GTCTACGCAGCCGATCTCATGGCAATCTTCTACGCCATCAGCCTGGTCCTTCAAGTAGCCCAGAAAAGGCAAGGC CGTTTAGACAGAGTGAAACAACACGCAACCATTTTAAGCGACAGCATGTCAGCGCTACAAGCAATTCGTAACCTG TCCAACAAGTCCGACCGGCGAATCATCCGAGCCATCCTGCAGGCAGCCTCCGAAATGAAAGCGCGAGGGCTTCCC ATTCGCCTCCAATGGGTGCCGGGGCATTGTGACGACTCTGGAAACCACGAGGCCGACCGACTGGCAAAGGAAGCG GTCGGCCCGAAGAAAATGCACCCCTTTCAGTTCCTTCTCTCGCGAGAAATTGACTTCATCCGGAAGAGAATTTTA AACGAGTGGAAGGATGAGTGGACTAAATCTACAAAGGGAAGGCACCTCCGCCAGATCACAGAACCCTGCCGGCAA TCCGTATCCGAAGACTGTACGGATCGCTCCCTCGGAATCGAACATATCTGCTTGCACAACTTCGGATGGGTCACT CTTGGCTGGCAACATACCGGAAACAACGCGGTTTTCAGGTCGACGACAGGTGTGTTTGTGGAGCTCGCGAGACGG TAG |
| Gene | >Ani_SJS100_1|g11308.t1 ATGTGCGCCATGGCGGAACCAGCCCATTGCGGAAATCGCGATCGAACCCGATCGGGAGAAAGCGCAGGCCAACGC GCGGGTACACAATCCTCAACCAGTATCACGGTCTTCTCTGATGCTTCAGGAAAAGGGAATAAACTAGGGGCCGCA GCAGTAGCTTTTGCTCACAACCAGCAGATAACAGGGTCCCAACTGATCAGTATCGGCTCAATGGAATATTGGTCA GTCTACGCAGCCGATCTCATGGCAATCTTCTACGCCATCAGCCTGGTCCTTCAAGTAGCCCAGAAAAGGCAAGGC CGTTTAGACAGAGTGAAACAACACGCAACCATTTTAAGCGACAGCATGTCAGCGCTACAAGCAATTCGTAACCTG TCCAACAAGTCCGACCGGCGAATCATCCGAGCCATCCTGCAGGCAGCCTCCGAAATGAAAGCGCGAGGGCTTCCC ATTCGCCTCCAATGGGTGCCGGGGCATTGTGACGACTCTGGAAACCACGAGGCCGACCGACTGGCAAAGGAAGCG GTCGGCCCGAAGAAAATGCACCCCTTTCAGTTCCTTCTCTCGCGAGAAATTGACTTCATCCGGAAGAGAATTTTA AACGAGTGGAAGGATGAGTGGACTAAATCTACAAAGGGAAGGCACCTCCGCCAGATCACAGAACCCTGCCGGCAA TCCGTATCCGAAGACTGTACGGATCGCTCCCTCGGAATCGAACATATCTGCTTGCACAACTTCGGATGGGTCACT CTTGGCTGGCAACATACCGGAAACAACGCGGTTTTCAGGTCGACGACAGGTGTGTTTGTGGAGCTCGCGAGACGG TAG |