© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ani_SJS100_1|g11149.t1 |
| Gene name | |
| Location | scaffold_160:11325..13134 |
| Strand | + |
| Gene length (bp) | 1809 |
| Transcript length (bp) | 1809 |
| Coding sequence length (bp) | 1809 |
| Protein length (aa) | 603 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00156 | Pribosyltran | Phosphoribosyl transferase domain | 4.6E-22 | 434 | 568 |
| PF04275 | P-mevalo_kinase | Phosphomevalonate kinase | 4.2E-19 | 212 | 323 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0004631 | phosphomevalonate kinase activity | Yes |
| GO:0006695 | cholesterol biosynthetic process | Yes |
| GO:0005737 | cytoplasm | Yes |
| GO:0046165 | alcohol biosynthetic process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0044281 | small molecule metabolic process | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:1901576 | organic substance biosynthetic process | No |
| GO:0008152 | metabolic process | No |
| GO:0016125 | sterol metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0016740 | transferase activity | No |
| GO:0008610 | lipid biosynthetic process | No |
| GO:0008202 | steroid metabolic process | No |
| GO:1901615 | organic hydroxy compound metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0016126 | sterol biosynthetic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:1902652 | secondary alcohol metabolic process | No |
| GO:0009058 | biosynthetic process | No |
| GO:0006629 | lipid metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0016301 | kinase activity | No |
| GO:1901362 | organic cyclic compound biosynthetic process | No |
| GO:0044283 | small molecule biosynthetic process | No |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups | No |
| GO:0003824 | catalytic activity | No |
| GO:0006066 | alcohol metabolic process | No |
| GO:0005575 | cellular_component | No |
| GO:1901617 | organic hydroxy compound biosynthetic process | No |
| GO:1902653 | secondary alcohol biosynthetic process | No |
| GO:0006694 | steroid biosynthetic process | No |
| GO:0008203 | cholesterol metabolic process | No |
| GO:0016776 | phosphotransferase activity, phosphate group as acceptor | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 33 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g11149.t1 MTVKLSDKPPLSTSSSIDTILGPGDDCRSVDGMSLFDAEMYMSRMHGGHGGNKTSAFKRCLFLKDIGAVDITDRL LAAIRNRPTPLCYLHLLQGGGAITDVGADATVFSCRDWDFACVITGVWPRNRDGTEVSEAAKRWVYDVAQDLLPF SSGAYGAELGPDPRDATLAAKAFGPNRPRLAQLKQSSDPHNVLAYACPLPRAPGEQTLIVLVTGESCAGKDYCAN VWVAALNEKGLRARAVSISDATKQEYAAASGADFERLLYDRGYKEQHRPALTAFFHSQVHRMPRLPDEHFLNVVR GAVGLDVLLLTGMRDKAPVAALSYLVPDNRVIEVHVKASDKIRRVRGGCYSDERPADGSKINRENEPSTISTLST ALDYRPTLLFDNDTAGDETVKRFAEDYLLPFFHEDLRRLSNMVRLVPGFPRAGIDFRHVLNIAQQPGGLALCTSL LQYHFTGDWAKVDMIACCEAGSLVFAPLLASQVNVPLALIREAGKLPPPTISVSRSASHISSLTLNAPTTKRIEI GRDVIPQGASVVVVDDTLATGETLVAVLQLLGRAGIPATNISILVIAEFPVHRGRDFLLQNGFGGVNIQSLLVYG TA* |
| Coding | >Ani_SJS100_1|g11149.t1 ATGACGGTGAAGCTCTCGGATAAGCCACCATTGTCTACTTCCTCATCTATAGACACAATTTTGGGGCCAGGAGAT GATTGCCGGTCCGTGGATGGCATGAGTCTGTTTGACGCCGAGATGTACATGTCCAGGATGCACGGGGGTCATGGC GGGAACAAGACGTCCGCTTTCAAGCGGTGCCTATTCTTGAAAGACATCGGAGCTGTGGACATCACAGATCGCTTA CTAGCAGCTATTCGCAATCGTCCCACACCTTTGTGTTATCTTCATCTACTGCAAGGTGGAGGAGCGATCACCGAC GTGGGGGCCGATGCCACTGTTTTCAGTTGTCGAGACTGGGATTTCGCCTGCGTGATAACTGGCGTCTGGCCCCGC AACCGAGATGGAACCGAAGTTTCTGAAGCGGCCAAACGATGGGTATATGACGTTGCCCAAGACTTGTTGCCGTTC AGTAGCGGAGCATATGGCGCTGAGCTCGGGCCCGATCCAAGAGATGCTACACTAGCGGCCAAGGCTTTTGGCCCA AACCGGCCGCGCCTGGCCCAGCTCAAGCAAAGCTCGGATCCGCACAACGTGCTGGCATACGCCTGCCCACTCCCG AGAGCACCAGGGGAACAAACACTTATCGTTCTTGTCACTGGCGAGAGCTGCGCTGGTAAGGACTATTGTGCCAAT GTCTGGGTTGCTGCGCTTAATGAGAAAGGCCTGAGGGCGCGCGCAGTCAGCATAAGCGATGCCACCAAGCAGGAA TATGCAGCGGCCTCCGGGGCCGATTTCGAGCGCCTGCTTTATGACCGTGGCTACAAGGAACAGCATCGTCCAGCA TTGACAGCGTTCTTCCATAGCCAGGTACACCGTATGCCTCGGCTTCCAGATGAGCATTTCCTGAATGTGGTGCGC GGAGCCGTAGGTTTAGACGTGCTACTATTGACTGGAATGAGAGACAAAGCGCCGGTCGCGGCTTTGTCGTATCTA GTACCAGACAACAGAGTGATTGAAGTTCACGTCAAAGCTAGTGACAAAATACGGCGAGTTCGCGGAGGGTGTTAT AGCGATGAACGCCCCGCTGATGGCAGCAAGATTAACAGAGAAAACGAACCGAGCACTATCTCGACGCTCTCGACG GCCTTGGACTACAGACCCACCCTTCTCTTTGACAATGACACGGCCGGGGATGAGACGGTCAAGAGGTTTGCTGAA GACTACCTGCTCCCCTTCTTTCATGAGGACTTGCGGCGATTGTCCAACATGGTACGCCTGGTACCTGGTTTCCCA CGCGCGGGCATCGACTTCCGTCACGTGCTCAACATCGCTCAGCAACCAGGGGGGCTGGCCCTGTGTACCTCCCTG CTACAATATCACTTCACAGGTGACTGGGCCAAAGTGGATATGATAGCGTGTTGCGAGGCCGGCAGCTTAGTCTTC GCCCCTTTGTTAGCCTCACAGGTCAATGTGCCCTTGGCGCTCATTCGCGAAGCCGGCAAGCTTCCCCCGCCCACC ATTTCCGTCTCCAGGTCTGCATCGCATATATCATCTTTAACTTTGAATGCACCGACAACGAAGCGAATTGAGATA GGCCGGGATGTGATTCCTCAAGGCGCTTCGGTGGTAGTGGTGGACGATACTCTTGCTACCGGAGAAACCCTTGTT GCGGTGTTACAATTATTAGGAAGAGCTGGAATTCCTGCTACGAACATCAGTATCTTGGTAATTGCCGAGTTCCCT GTTCACCGTGGCCGCGACTTCCTGCTCCAGAATGGGTTTGGGGGAGTCAATATCCAGAGCCTTTTGGTCTACGGT ACTGCCTAG |
| Transcript | >Ani_SJS100_1|g11149.t1 ATGACGGTGAAGCTCTCGGATAAGCCACCATTGTCTACTTCCTCATCTATAGACACAATTTTGGGGCCAGGAGAT GATTGCCGGTCCGTGGATGGCATGAGTCTGTTTGACGCCGAGATGTACATGTCCAGGATGCACGGGGGTCATGGC GGGAACAAGACGTCCGCTTTCAAGCGGTGCCTATTCTTGAAAGACATCGGAGCTGTGGACATCACAGATCGCTTA CTAGCAGCTATTCGCAATCGTCCCACACCTTTGTGTTATCTTCATCTACTGCAAGGTGGAGGAGCGATCACCGAC GTGGGGGCCGATGCCACTGTTTTCAGTTGTCGAGACTGGGATTTCGCCTGCGTGATAACTGGCGTCTGGCCCCGC AACCGAGATGGAACCGAAGTTTCTGAAGCGGCCAAACGATGGGTATATGACGTTGCCCAAGACTTGTTGCCGTTC AGTAGCGGAGCATATGGCGCTGAGCTCGGGCCCGATCCAAGAGATGCTACACTAGCGGCCAAGGCTTTTGGCCCA AACCGGCCGCGCCTGGCCCAGCTCAAGCAAAGCTCGGATCCGCACAACGTGCTGGCATACGCCTGCCCACTCCCG AGAGCACCAGGGGAACAAACACTTATCGTTCTTGTCACTGGCGAGAGCTGCGCTGGTAAGGACTATTGTGCCAAT GTCTGGGTTGCTGCGCTTAATGAGAAAGGCCTGAGGGCGCGCGCAGTCAGCATAAGCGATGCCACCAAGCAGGAA TATGCAGCGGCCTCCGGGGCCGATTTCGAGCGCCTGCTTTATGACCGTGGCTACAAGGAACAGCATCGTCCAGCA TTGACAGCGTTCTTCCATAGCCAGGTACACCGTATGCCTCGGCTTCCAGATGAGCATTTCCTGAATGTGGTGCGC GGAGCCGTAGGTTTAGACGTGCTACTATTGACTGGAATGAGAGACAAAGCGCCGGTCGCGGCTTTGTCGTATCTA GTACCAGACAACAGAGTGATTGAAGTTCACGTCAAAGCTAGTGACAAAATACGGCGAGTTCGCGGAGGGTGTTAT AGCGATGAACGCCCCGCTGATGGCAGCAAGATTAACAGAGAAAACGAACCGAGCACTATCTCGACGCTCTCGACG GCCTTGGACTACAGACCCACCCTTCTCTTTGACAATGACACGGCCGGGGATGAGACGGTCAAGAGGTTTGCTGAA GACTACCTGCTCCCCTTCTTTCATGAGGACTTGCGGCGATTGTCCAACATGGTACGCCTGGTACCTGGTTTCCCA CGCGCGGGCATCGACTTCCGTCACGTGCTCAACATCGCTCAGCAACCAGGGGGGCTGGCCCTGTGTACCTCCCTG CTACAATATCACTTCACAGGTGACTGGGCCAAAGTGGATATGATAGCGTGTTGCGAGGCCGGCAGCTTAGTCTTC GCCCCTTTGTTAGCCTCACAGGTCAATGTGCCCTTGGCGCTCATTCGCGAAGCCGGCAAGCTTCCCCCGCCCACC ATTTCCGTCTCCAGGTCTGCATCGCATATATCATCTTTAACTTTGAATGCACCGACAACGAAGCGAATTGAGATA GGCCGGGATGTGATTCCTCAAGGCGCTTCGGTGGTAGTGGTGGACGATACTCTTGCTACCGGAGAAACCCTTGTT GCGGTGTTACAATTATTAGGAAGAGCTGGAATTCCTGCTACGAACATCAGTATCTTGGTAATTGCCGAGTTCCCT GTTCACCGTGGCCGCGACTTCCTGCTCCAGAATGGGTTTGGGGGAGTCAATATCCAGAGCCTTTTGGTCTACGGT ACTGCCTAG |
| Gene | >Ani_SJS100_1|g11149.t1 ATGACGGTGAAGCTCTCGGATAAGCCACCATTGTCTACTTCCTCATCTATAGACACAATTTTGGGGCCAGGAGAT GATTGCCGGTCCGTGGATGGCATGAGTCTGTTTGACGCCGAGATGTACATGTCCAGGATGCACGGGGGTCATGGC GGGAACAAGACGTCCGCTTTCAAGCGGTGCCTATTCTTGAAAGACATCGGAGCTGTGGACATCACAGATCGCTTA CTAGCAGCTATTCGCAATCGTCCCACACCTTTGTGTTATCTTCATCTACTGCAAGGTGGAGGAGCGATCACCGAC GTGGGGGCCGATGCCACTGTTTTCAGTTGTCGAGACTGGGATTTCGCCTGCGTGATAACTGGCGTCTGGCCCCGC AACCGAGATGGAACCGAAGTTTCTGAAGCGGCCAAACGATGGGTATATGACGTTGCCCAAGACTTGTTGCCGTTC AGTAGCGGAGCATATGGCGCTGAGCTCGGGCCCGATCCAAGAGATGCTACACTAGCGGCCAAGGCTTTTGGCCCA AACCGGCCGCGCCTGGCCCAGCTCAAGCAAAGCTCGGATCCGCACAACGTGCTGGCATACGCCTGCCCACTCCCG AGAGCACCAGGGGAACAAACACTTATCGTTCTTGTCACTGGCGAGAGCTGCGCTGGTAAGGACTATTGTGCCAAT GTCTGGGTTGCTGCGCTTAATGAGAAAGGCCTGAGGGCGCGCGCAGTCAGCATAAGCGATGCCACCAAGCAGGAA TATGCAGCGGCCTCCGGGGCCGATTTCGAGCGCCTGCTTTATGACCGTGGCTACAAGGAACAGCATCGTCCAGCA TTGACAGCGTTCTTCCATAGCCAGGTACACCGTATGCCTCGGCTTCCAGATGAGCATTTCCTGAATGTGGTGCGC GGAGCCGTAGGTTTAGACGTGCTACTATTGACTGGAATGAGAGACAAAGCGCCGGTCGCGGCTTTGTCGTATCTA GTACCAGACAACAGAGTGATTGAAGTTCACGTCAAAGCTAGTGACAAAATACGGCGAGTTCGCGGAGGGTGTTAT AGCGATGAACGCCCCGCTGATGGCAGCAAGATTAACAGAGAAAACGAACCGAGCACTATCTCGACGCTCTCGACG GCCTTGGACTACAGACCCACCCTTCTCTTTGACAATGACACGGCCGGGGATGAGACGGTCAAGAGGTTTGCTGAA GACTACCTGCTCCCCTTCTTTCATGAGGACTTGCGGCGATTGTCCAACATGGTACGCCTGGTACCTGGTTTCCCA CGCGCGGGCATCGACTTCCGTCACGTGCTCAACATCGCTCAGCAACCAGGGGGGCTGGCCCTGTGTACCTCCCTG CTACAATATCACTTCACAGGTGACTGGGCCAAAGTGGATATGATAGCGTGTTGCGAGGCCGGCAGCTTAGTCTTC GCCCCTTTGTTAGCCTCACAGGTCAATGTGCCCTTGGCGCTCATTCGCGAAGCCGGCAAGCTTCCCCCGCCCACC ATTTCCGTCTCCAGGTCTGCATCGCATATATCATCTTTAACTTTGAATGCACCGACAACGAAGCGAATTGAGATA GGCCGGGATGTGATTCCTCAAGGCGCTTCGGTGGTAGTGGTGGACGATACTCTTGCTACCGGAGAAACCCTTGTT GCGGTGTTACAATTATTAGGAAGAGCTGGAATTCCTGCTACGAACATCAGTATCTTGGTAATTGCCGAGTTCCCT GTTCACCGTGGCCGCGACTTCCTGCTCCAGAATGGGTTTGGGGGAGTCAATATCCAGAGCCTTTTGGTCTACGGT ACTGCCTAG |