© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS100_1|g11047.t1 |
| Gene name | |
| Location | scaffold_150:27608..28607 |
| Strand | + |
| Gene length (bp) | 999 |
| Transcript length (bp) | 999 |
| Coding sequence length (bp) | 999 |
| Protein length (aa) | 333 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03664 | Glyco_hydro_62 | Glycosyl hydrolase family 62 | 2.5E-136 | 27 | 301 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0046556 | alpha-L-arabinofuranosidase activity | Yes |
| GO:0046373 | L-arabinose metabolic process | Yes |
| GO:0003824 | catalytic activity | No |
| GO:0044281 | small molecule metabolic process | No |
| GO:0016787 | hydrolase activity | No |
| GO:0008150 | biological_process | No |
| GO:0005975 | carbohydrate metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0005996 | monosaccharide metabolic process | No |
| GO:0019321 | pentose metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0019566 | arabinose metabolic process | No |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | No |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 25 | 0.999764 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 5 | 24 | 19 |
| CAZyme category | E-value | Start | End |
|---|---|---|---|
| GH62 | 3.6E-118 | 27 | 301 |
| Orthofinder run ID | 3 |
| Orthogroup | 165 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g11047.t1 MRSSNFYSIFTTGAILFALLPYALAQCDLPSTYNWTSTGPLADPQSGLVSLKDFTAVPYNNQHLVYASYVDASSN YGSLSFGIFTNWSDMAATNQSLMTSRTVAPTLFYFSPKDIWILAYQWGSTAFSYKTSTNPTDVNSWSGAQELFTG TISNSSTGVIDQTLIGDDENMYLFFAGDNGNIYRSSMPLSSFPGSFGAEYETILTESRSKLFEAVQVYTIKGKTT TTFLMIVEAMGSEGRYFRSFTADRLDGNWTVQEGAGTESSPFAGKANSGARWTNDISHGDLVRVTANQTMGVDAC NLQLLYQGRDPSSDGEDYNLLPYRPGVLALQV* |
| Coding | >Ani_SJS100_1|g11047.t1 ATGAGAAGCTCAAATTTTTATTCCATCTTCACAACGGGCGCTATACTGTTCGCATTACTCCCATATGCCCTAGCA CAATGTGATCTCCCATCAACCTACAACTGGACCTCAACTGGCCCCCTTGCAGACCCTCAGTCTGGCCTTGTATCT CTGAAAGACTTCACAGCCGTCCCATATAACAATCAACACCTCGTTTACGCATCATACGTTGACGCTTCCTCGAAC TACGGCTCACTCAGTTTCGGCATCTTTACTAATTGGAGCGACATGGCCGCCACAAACCAAAGCTTGATGACCTCC AGAACTGTCGCACCAACCCTATTTTATTTCTCCCCCAAAGATATCTGGATTCTTGCATACCAATGGGGTTCTACA GCCTTCTCTTACAAGACATCCACCAATCCAACCGACGTGAACAGTTGGTCCGGGGCACAAGAGCTTTTCACGGGG ACAATCTCGAACTCAAGCACAGGGGTCATTGATCAAACACTCATTGGCGACGATGAGAACATGTATCTCTTCTTC GCCGGGGACAACGGTAATATCTACCGCTCTAGCATGCCTCTTTCCTCCTTCCCTGGCTCCTTTGGAGCCGAGTAT GAAACAATCCTCACGGAGTCTCGCAGCAAACTCTTCGAAGCAGTCCAGGTCTATACTATCAAAGGTAAAACAACG ACAACATTCTTGATGATAGTCGAAGCAATGGGGTCTGAAGGGCGATACTTCCGGTCCTTCACGGCGGATAGACTA GATGGAAATTGGACGGTGCAGGAGGGTGCGGGGACAGAGAGCAGCCCGTTTGCAGGGAAGGCAAATAGTGGCGCG AGATGGACCAATGATATTAGTCATGGGGATCTCGTAAGGGTTACGGCAAATCAGACAATGGGTGTTGATGCATGT AATCTGCAGTTGCTTTACCAGGGGAGAGATCCCTCAAGTGATGGCGAAGACTACAACTTGCTGCCCTATCGGCCG GGAGTCTTAGCACTGCAGGTCTGA |
| Transcript | >Ani_SJS100_1|g11047.t1 ATGAGAAGCTCAAATTTTTATTCCATCTTCACAACGGGCGCTATACTGTTCGCATTACTCCCATATGCCCTAGCA CAATGTGATCTCCCATCAACCTACAACTGGACCTCAACTGGCCCCCTTGCAGACCCTCAGTCTGGCCTTGTATCT CTGAAAGACTTCACAGCCGTCCCATATAACAATCAACACCTCGTTTACGCATCATACGTTGACGCTTCCTCGAAC TACGGCTCACTCAGTTTCGGCATCTTTACTAATTGGAGCGACATGGCCGCCACAAACCAAAGCTTGATGACCTCC AGAACTGTCGCACCAACCCTATTTTATTTCTCCCCCAAAGATATCTGGATTCTTGCATACCAATGGGGTTCTACA GCCTTCTCTTACAAGACATCCACCAATCCAACCGACGTGAACAGTTGGTCCGGGGCACAAGAGCTTTTCACGGGG ACAATCTCGAACTCAAGCACAGGGGTCATTGATCAAACACTCATTGGCGACGATGAGAACATGTATCTCTTCTTC GCCGGGGACAACGGTAATATCTACCGCTCTAGCATGCCTCTTTCCTCCTTCCCTGGCTCCTTTGGAGCCGAGTAT GAAACAATCCTCACGGAGTCTCGCAGCAAACTCTTCGAAGCAGTCCAGGTCTATACTATCAAAGGTAAAACAACG ACAACATTCTTGATGATAGTCGAAGCAATGGGGTCTGAAGGGCGATACTTCCGGTCCTTCACGGCGGATAGACTA GATGGAAATTGGACGGTGCAGGAGGGTGCGGGGACAGAGAGCAGCCCGTTTGCAGGGAAGGCAAATAGTGGCGCG AGATGGACCAATGATATTAGTCATGGGGATCTCGTAAGGGTTACGGCAAATCAGACAATGGGTGTTGATGCATGT AATCTGCAGTTGCTTTACCAGGGGAGAGATCCCTCAAGTGATGGCGAAGACTACAACTTGCTGCCCTATCGGCCG GGAGTCTTAGCACTGCAGGTCTGA |
| Gene | >Ani_SJS100_1|g11047.t1 ATGAGAAGCTCAAATTTTTATTCCATCTTCACAACGGGCGCTATACTGTTCGCATTACTCCCATATGCCCTAGCA CAATGTGATCTCCCATCAACCTACAACTGGACCTCAACTGGCCCCCTTGCAGACCCTCAGTCTGGCCTTGTATCT CTGAAAGACTTCACAGCCGTCCCATATAACAATCAACACCTCGTTTACGCATCATACGTTGACGCTTCCTCGAAC TACGGCTCACTCAGTTTCGGCATCTTTACTAATTGGAGCGACATGGCCGCCACAAACCAAAGCTTGATGACCTCC AGAACTGTCGCACCAACCCTATTTTATTTCTCCCCCAAAGATATCTGGATTCTTGCATACCAATGGGGTTCTACA GCCTTCTCTTACAAGACATCCACCAATCCAACCGACGTGAACAGTTGGTCCGGGGCACAAGAGCTTTTCACGGGG ACAATCTCGAACTCAAGCACAGGGGTCATTGATCAAACACTCATTGGCGACGATGAGAACATGTATCTCTTCTTC GCCGGGGACAACGGTAATATCTACCGCTCTAGCATGCCTCTTTCCTCCTTCCCTGGCTCCTTTGGAGCCGAGTAT GAAACAATCCTCACGGAGTCTCGCAGCAAACTCTTCGAAGCAGTCCAGGTCTATACTATCAAAGGTAAAACAACG ACAACATTCTTGATGATAGTCGAAGCAATGGGGTCTGAAGGGCGATACTTCCGGTCCTTCACGGCGGATAGACTA GATGGAAATTGGACGGTGCAGGAGGGTGCGGGGACAGAGAGCAGCCCGTTTGCAGGGAAGGCAAATAGTGGCGCG AGATGGACCAATGATATTAGTCATGGGGATCTCGTAAGGGTTACGGCAAATCAGACAATGGGTGTTGATGCATGT AATCTGCAGTTGCTTTACCAGGGGAGAGATCCCTCAAGTGATGGCGAAGACTACAACTTGCTGCCCTATCGGCCG GGAGTCTTAGCACTGCAGGTCTGA |