© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS100_1|g10996.t1 |
| Gene name | |
| Location | scaffold_146:15713..16633 |
| Strand | + |
| Gene length (bp) | 920 |
| Transcript length (bp) | 789 |
| Coding sequence length (bp) | 789 |
| Protein length (aa) | 263 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03896 | TRAP_alpha | Translocon-associated protein (TRAP), alpha subunit | 8.0E-14 | 52 | 250 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005789 | endoplasmic reticulum membrane | Yes |
| GO:0110165 | cellular anatomical entity | No |
| GO:0031090 | organelle membrane | No |
| GO:0005575 | cellular_component | No |
| GO:0016020 | membrane | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 24 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 169 | 191 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g10996.t1 MGRFGFLSLALLSVQALIGGSLAADAAEKEDLPETQLLSVTAHASFPASEIFGVKLVNGYPTEALITFANEEESP VTVNFIGGSLSAVEGESSQIVRNLTAHRYSVEIPAGQQESVSYSFATEMHPQDLLLTLASVISDTDGNLFTLYAY NGTVSVVEPETSIFDPQILFLYFFLLACFSGVVYFFYTVWIAPYFPQKRRAGKGPEYKKSAGASKKEAPVEAPSS PAVSSATTYNAEWIPAHHINRPEARKVKGSAKAKNRA* |
| Coding | >Ani_SJS100_1|g10996.t1 ATGGGTCGCTTTGGTTTCTTGTCCCTGGCTCTCCTTTCTGTCCAGGCCTTGATTGGCGGCAGTCTCGCGGCGGAT GCTGCTGAGAAGGAGGATCTCCCTGAAACCCAATTGCTTTCTGTCACGGCCCACGCCTCCTTCCCTGCCTCCGAG ATCTTTGGTGTCAAGCTTGTCAATGGCTACCCGACCGAGGCGCTGATCACTTTCGCCAATGAGGAGGAATCTCCC GTGACTGTGAACTTCATTGGTGGTTCCTTGTCGGCAGTTGAAGGAGAAAGCAGCCAGATTGTTCGCAACCTGACT GCGCACCGTTACAGCGTTGAGATCCCGGCCGGTCAGCAGGAGAGCGTCAGCTACAGCTTCGCCACCGAAATGCAC CCCCAGGATTTGCTGCTCACCCTCGCTTCCGTCATCTCTGATACCGATGGCAACCTCTTCACTCTCTACGCCTAC AACGGCACTGTCAGCGTTGTTGAGCCGGAGACCAGCATCTTTGACCCTCAGATCCTCTTCCTGTACTTCTTCCTC CTGGCTTGCTTCTCTGGCGTCGTCTACTTCTTCTACACCGTCTGGATCGCTCCCTACTTCCCCCAGAAGCGCCGC GCTGGAAAGGGCCCCGAGTACAAGAAGTCCGCTGGTGCCTCCAAGAAGGAGGCCCCCGTTGAGGCTCCCAGCAGC CCTGCTGTCTCGTCTGCCACTACCTACAACGCCGAGTGGATCCCCGCTCACCACATCAACCGTCCTGAGGCCAGG AAGGTCAAGGGTAGCGCCAAGGCTAAGAACCGTGCCTAA |
| Transcript | >Ani_SJS100_1|g10996.t1 ATGGGTCGCTTTGGTTTCTTGTCCCTGGCTCTCCTTTCTGTCCAGGCCTTGATTGGCGGCAGTCTCGCGGCGGAT GCTGCTGAGAAGGAGGATCTCCCTGAAACCCAATTGCTTTCTGTCACGGCCCACGCCTCCTTCCCTGCCTCCGAG ATCTTTGGTGTCAAGCTTGTCAATGGCTACCCGACCGAGGCGCTGATCACTTTCGCCAATGAGGAGGAATCTCCC GTGACTGTGAACTTCATTGGTGGTTCCTTGTCGGCAGTTGAAGGAGAAAGCAGCCAGATTGTTCGCAACCTGACT GCGCACCGTTACAGCGTTGAGATCCCGGCCGGTCAGCAGGAGAGCGTCAGCTACAGCTTCGCCACCGAAATGCAC CCCCAGGATTTGCTGCTCACCCTCGCTTCCGTCATCTCTGATACCGATGGCAACCTCTTCACTCTCTACGCCTAC AACGGCACTGTCAGCGTTGTTGAGCCGGAGACCAGCATCTTTGACCCTCAGATCCTCTTCCTGTACTTCTTCCTC CTGGCTTGCTTCTCTGGCGTCGTCTACTTCTTCTACACCGTCTGGATCGCTCCCTACTTCCCCCAGAAGCGCCGC GCTGGAAAGGGCCCCGAGTACAAGAAGTCCGCTGGTGCCTCCAAGAAGGAGGCCCCCGTTGAGGCTCCCAGCAGC CCTGCTGTCTCGTCTGCCACTACCTACAACGCCGAGTGGATCCCCGCTCACCACATCAACCGTCCTGAGGCCAGG AAGGTCAAGGGTAGCGCCAAGGCTAAGAACCGTGCCTAA |
| Gene | >Ani_SJS100_1|g10996.t1 ATGGGTCGCTTTGGTTTCTTGTCCCTGGCTCTCCTTTCTGTCCAGGCCTTGATTGGCGGCAGTCTCGCGGCGGTA CGTTCCCTCTCGCGTGACTCCCATCGTCCCACTGTCAATTGAGTTGCTGACGCGATGTCGCATGTTACTAGGATG CTGCTGAGAAGGAGGATCTCCCTGAAACCCAATTGCTTTCTGTCACGGCCCACGCCTCCTTCCCTGCCTCCGAGA TCTTTGGTGTCAAGCTTGTCAATGGCTACCCGACCGAGGCGCTGATCACTTTCGCCAATGAGGAGGAATCTCCCG TGACTGTGAACTTCATTGGTGGTTCCTTGTCGGCAGTTGAAGGAGAAAGCAGCCAGATTGTTCGCAACCTGACTG CGCACCGTTACAGCGTTGAGATCCCGGCCGGTCAGCAGGAGAGCGTCAGCTACAGCTTCGCCACCGAAATGCACC CCCAGGATTTGCTGCTCACCCTCGCTTCCGTCATCTCTGATACCGATGGCAACCTCTTCACTCTCTACGCCTACA ACGGCACTGTCAGCGTTGTTGAGCCGGAGACCAGCATCTTTGACCCTCAGATGTAAGGCACTTTTCTCACAGCTC GCCGATAAGGCCAAGCTAACCCTATTGTTATTAGCCTCTTCCTGTACTTCTTCCTCCTGGCTTGCTTCTCTGGCG TCGTCTACTTCTTCTACACCGTCTGGATCGCTCCCTACTTCCCCCAGAAGCGCCGCGCTGGAAAGGGCCCCGAGT ACAAGAAGTCCGCTGGTGCCTCCAAGAAGGAGGCCCCCGTTGAGGCTCCCAGCAGCCCTGCTGTCTCGTCTGCCA CTACCTACAACGCCGAGTGGATCCCCGCTCACCACATCAACCGTCCTGAGGCCAGGAAGGTCAAGGGTAGCGCCA AGGCTAAGAACCGTGCCTAA |