© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ani_SJS100_1|g10895.t1 |
| Gene name | |
| Location | scaffold_139:45450..46529 |
| Strand | + |
| Gene length (bp) | 1079 |
| Transcript length (bp) | 978 |
| Coding sequence length (bp) | 978 |
| Protein length (aa) | 326 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03006 | HlyIII | Haemolysin-III related | 8.1E-51 | 84 | 305 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0005575 | cellular_component | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0031224 | intrinsic component of membrane | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 30 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 90 | 112 | 22 |
| 2 | 125 | 147 | 22 |
| 3 | 162 | 184 | 22 |
| 4 | 191 | 208 | 17 |
| 5 | 223 | 245 | 22 |
| 6 | 257 | 276 | 19 |
| 7 | 291 | 313 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g10895.t1 MQATFADSPSITETLPRQRKPSLPPGAFAEEPATPEKVLFNDGAPILVSYDEIPEWYQDNEFIRHGYRPVSNSTH ACFASWLYLHNETVNIYSHLVPAVFFLAAEGMFYQHLQVKYPEATLSDHAIFAFFLLTAVICLGLSTTYHTLMNH SLQVSELWLRLDFVGIIVLTLGDFVSGIYMVFYCEPLLRRLYWGMIISLSCITIMILVNPKFQGPRWRTFRVCTF VGTGLSGFAPLIHGISVFGFAKMMVQSGMPYYLGEGGLLILGALFYTMRIPESIKPGRFDIFGCSHQVFHVLVAL TTVVQLIGILSAFDYNYNHGKCRLP* |
| Coding | >Ani_SJS100_1|g10895.t1 ATGCAAGCCACATTTGCGGACAGTCCATCGATAACGGAAACACTCCCGCGCCAGCGGAAGCCTTCTCTTCCCCCG GGAGCCTTCGCAGAAGAACCAGCAACTCCCGAGAAAGTTCTCTTCAATGATGGTGCCCCCATCCTTGTCTCTTAT GACGAAATCCCCGAATGGTATCAAGACAATGAGTTTATTCGACATGGCTATCGACCCGTCTCTAATTCCACTCAT GCATGCTTTGCCAGTTGGCTGTATCTGCACAATGAAACCGTGAACATCTATTCGCATCTTGTTCCCGCCGTCTTC TTCCTCGCAGCAGAAGGCATGTTTTATCAGCATCTTCAAGTCAAATATCCCGAAGCCACGTTATCCGACCACGCA ATTTTTGCCTTCTTCCTCTTGACTGCTGTTATATGCTTGGGTCTGTCAACTACCTATCACACACTAATGAATCAC TCCCTCCAAGTCTCTGAGCTATGGTTACGACTCGACTTTGTTGGTATTATCGTCCTGACCCTAGGAGATTTTGTC TCGGGAATTTATATGGTATTCTACTGTGAGCCTCTGTTGAGACGATTATACTGGGGCATGATCATCTCACTGAGT TGCATTACAATAATGATCCTCGTGAACCCCAAATTTCAAGGACCCCGTTGGCGCACCTTCCGTGTCTGCACTTTC GTCGGCACTGGACTATCTGGCTTCGCGCCTCTGATTCACGGTATCAGCGTCTTTGGTTTTGCTAAAATGATGGTG CAGTCTGGCATGCCATACTACCTCGGCGAAGGAGGGCTTCTTATTCTAGGTGCACTTTTTTATACTATGCGCATT CCGGAATCAATCAAGCCCGGGAGGTTTGACATATTCGGCTGCTCTCATCAGGTATTTCATGTTCTGGTCGCCCTC ACCACAGTTGTTCAGTTGATTGGTATCCTTTCGGCGTTTGACTATAACTACAACCATGGAAAATGCAGACTGCCA TGA |
| Transcript | >Ani_SJS100_1|g10895.t1 ATGCAAGCCACATTTGCGGACAGTCCATCGATAACGGAAACACTCCCGCGCCAGCGGAAGCCTTCTCTTCCCCCG GGAGCCTTCGCAGAAGAACCAGCAACTCCCGAGAAAGTTCTCTTCAATGATGGTGCCCCCATCCTTGTCTCTTAT GACGAAATCCCCGAATGGTATCAAGACAATGAGTTTATTCGACATGGCTATCGACCCGTCTCTAATTCCACTCAT GCATGCTTTGCCAGTTGGCTGTATCTGCACAATGAAACCGTGAACATCTATTCGCATCTTGTTCCCGCCGTCTTC TTCCTCGCAGCAGAAGGCATGTTTTATCAGCATCTTCAAGTCAAATATCCCGAAGCCACGTTATCCGACCACGCA ATTTTTGCCTTCTTCCTCTTGACTGCTGTTATATGCTTGGGTCTGTCAACTACCTATCACACACTAATGAATCAC TCCCTCCAAGTCTCTGAGCTATGGTTACGACTCGACTTTGTTGGTATTATCGTCCTGACCCTAGGAGATTTTGTC TCGGGAATTTATATGGTATTCTACTGTGAGCCTCTGTTGAGACGATTATACTGGGGCATGATCATCTCACTGAGT TGCATTACAATAATGATCCTCGTGAACCCCAAATTTCAAGGACCCCGTTGGCGCACCTTCCGTGTCTGCACTTTC GTCGGCACTGGACTATCTGGCTTCGCGCCTCTGATTCACGGTATCAGCGTCTTTGGTTTTGCTAAAATGATGGTG CAGTCTGGCATGCCATACTACCTCGGCGAAGGAGGGCTTCTTATTCTAGGTGCACTTTTTTATACTATGCGCATT CCGGAATCAATCAAGCCCGGGAGGTTTGACATATTCGGCTGCTCTCATCAGGTATTTCATGTTCTGGTCGCCCTC ACCACAGTTGTTCAGTTGATTGGTATCCTTTCGGCGTTTGACTATAACTACAACCATGGAAAATGCAGACTGCCA TGA |
| Gene | >Ani_SJS100_1|g10895.t1 ATGCAAGCCACATTTGCGGACAGTCCATCGATAACGGAAACACTCCCGCGCCAGCGGAAGCCTTCTCTTCCCCCG GGAGCCTTCGCAGAAGAACCAGCAACTCCCGAGAAAGTTCTCTTCAATGATGGTGCCCCCATCCTTGTCTCTTAT GACGAAATCCCCGAATGGTATCAAGACAATGAGTTTATTCGACATGGCTATCGACCCGTCTCTAATTCCACTCAT GCATGCTTTGCCAGTTGGCTGTATCTGCACAATGAAACCGTGAACATCTATTCGCATCTTGTTCCCGCCGTCTTC TTCCTCGCAGCAGAAGGCATGTTTTATCAGCATCTTCAAGTCAAATATCCCGAAGCCACGTTATCCGACCACGCA ATTTTTGCCTTCTTCCTCTTGACTGCTGTTATATGCTTGGGTCTGTCAACTACCTATCACACACTAATGAATCAC TCCCTCCAAGTCTCTGAGCTATGGTTACGACTCGACTTTGTTGGTATTATCGTCCTGACCCTAGGAGATTTTGTC TCGGGAATTTATATGGTATTCTACTGTGAGCCTCTGTTGAGACGATTATACTGGGGCATGGTATGGTCGATCACT CCAGTGCTTTGTACACAAAGCTAATGGATTTTGGAAGATCATCTCACTGAGTTGCATTACAATAATGATCCTCGT GAACCCCAAATTTCAAGGACCCCGTTGGCGCACCTTCCGTGTCTGCACTTTCGTCGGCACTGGACTATCTGGCTT CGCGCCTCTGATTCACGGTATCAGCGTCTTTGGTTTTGCTAAAATGATGGTGCAGTCTGGCATGCCATACTACCT CGGCGAAGGAGGGCTTCTTATTCTAGGTGCACTTTTTTATACTGTTAGTACCCTGACACAGAAGCAAGATACCAT ACTAATGATTGATCTAGATGCGCATTCCGGAATCAATCAAGCCCGGGAGGTTTGACATATTCGGCTGCTCTCATC AGGTATTTCATGTTCTGGTCGCCCTCACCACAGTTGTTCAGTTGATTGGTATCCTTTCGGCGTTTGACTATAACT ACAACCATGGAAAATGCAGACTGCCATGA |