© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS100_1|g10853.t1 |
| Gene name | |
| Location | scaffold_137:28793..29753 |
| Strand | - |
| Gene length (bp) | 960 |
| Transcript length (bp) | 894 |
| Coding sequence length (bp) | 894 |
| Protein length (aa) | 298 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01988 | VIT1 | VIT family | 6.7E-63 | 65 | 284 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005384 | manganese ion transmembrane transporter activity | Yes |
| GO:0030026 | cellular manganese ion homeostasis | Yes |
| GO:0006875 | cellular metal ion homeostasis | No |
| GO:0098771 | inorganic ion homeostasis | No |
| GO:0055071 | manganese ion homeostasis | No |
| GO:0048878 | chemical homeostasis | No |
| GO:0046916 | cellular transition metal ion homeostasis | No |
| GO:0065008 | regulation of biological quality | No |
| GO:0022890 | inorganic cation transmembrane transporter activity | No |
| GO:0065007 | biological regulation | No |
| GO:0008324 | cation transmembrane transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0009987 | cellular process | No |
| GO:0042592 | homeostatic process | No |
| GO:0030003 | cellular cation homeostasis | No |
| GO:0055076 | transition metal ion homeostasis | No |
| GO:0050801 | ion homeostasis | No |
| GO:0046873 | metal ion transmembrane transporter activity | No |
| GO:0015075 | ion transmembrane transporter activity | No |
| GO:0019725 | cellular homeostasis | No |
| GO:0055080 | cation homeostasis | No |
| GO:0055065 | metal ion homeostasis | No |
| GO:0008150 | biological_process | No |
| GO:0015318 | inorganic molecular entity transmembrane transporter activity | No |
| GO:0006873 | cellular ion homeostasis | No |
| GO:0022857 | transmembrane transporter activity | No |
| GO:0055082 | cellular chemical homeostasis | No |
| GO:0005215 | transporter activity | No |
| GO:0046915 | transition metal ion transmembrane transporter activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 19 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 94 | 116 | 22 |
| 2 | 194 | 216 | 22 |
| 3 | 226 | 248 | 22 |
| 4 | 261 | 283 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g10853.t1 MSISSLRGLLTNYSPVSEEFTQPDLEKELHVSLRNGDDSESSSSRSVCREKAEKKESKIVDGRIVSDAIIGLSDG MTVPFALTAGLSALGDTKVVVFGGMAELIAGAISMGLGGYLGAKSEEESYRATLKETKQEILTDPASVTETISDV FAPYDLPAELVGELTRHLSSSPNLPSFLMNFHHTVQEPSGSRAFICALTIALGYFIGGFVPLLPYFFVGPHDVLS ALRWSIATMAVALFLFGYGKTCFVSGWKGYRNIRRGVIGGLQMVLVGGVAAGSAMGLVKGFQMLADSHSHEH* |
| Coding | >Ani_SJS100_1|g10853.t1 ATGTCGATCTCTTCTCTTCGAGGCCTTCTTACCAACTACTCCCCCGTTTCAGAGGAATTCACCCAACCCGATCTG GAAAAGGAGTTGCACGTTTCCCTTCGAAATGGCGACGACAGCGAGTCCTCCTCATCCCGGTCAGTCTGCCGGGAA AAAGCGGAGAAGAAGGAGTCCAAAATCGTTGACGGACGTATCGTCTCCGACGCTATCATCGGTCTCTCCGACGGC ATGACGGTTCCATTTGCCCTGACCGCAGGCTTATCTGCTCTGGGAGACACCAAGGTCGTGGTTTTTGGCGGCATG GCCGAACTCATTGCAGGAGCCATCTCCATGGGATTGGGAGGCTACTTGGGTGCGAAGAGCGAAGAGGAGTCCTAC CGCGCAACCCTGAAGGAAACAAAGCAAGAGATTCTAACCGACCCCGCATCGGTGACTGAGACGATCTCGGATGTC TTTGCGCCCTATGACCTCCCCGCAGAGCTGGTGGGAGAGCTCACGCGACACCTCTCCTCATCCCCTAACCTCCCC TCCTTCCTCATGAACTTCCATCACACCGTCCAGGAACCCTCTGGCTCTCGTGCCTTCATCTGTGCCTTGACCATT GCATTGGGATACTTCATCGGTGGCTTCGTGCCACTCCTCCCCTACTTCTTCGTTGGGCCCCATGATGTACTCTCT GCCCTGCGCTGGTCAATCGCCACGATGGCCGTTGCTTTGTTCTTGTTCGGTTACGGCAAGACGTGCTTCGTCAGC GGATGGAAAGGATATCGGAACATCAGACGCGGTGTCATTGGCGGCTTGCAGATGGTTCTAGTCGGAGGCGTTGCA GCAGGCTCTGCAATGGGGCTGGTGAAGGGGTTCCAAATGCTGGCTGACTCTCATAGTCATGAGCATTAG |
| Transcript | >Ani_SJS100_1|g10853.t1 ATGTCGATCTCTTCTCTTCGAGGCCTTCTTACCAACTACTCCCCCGTTTCAGAGGAATTCACCCAACCCGATCTG GAAAAGGAGTTGCACGTTTCCCTTCGAAATGGCGACGACAGCGAGTCCTCCTCATCCCGGTCAGTCTGCCGGGAA AAAGCGGAGAAGAAGGAGTCCAAAATCGTTGACGGACGTATCGTCTCCGACGCTATCATCGGTCTCTCCGACGGC ATGACGGTTCCATTTGCCCTGACCGCAGGCTTATCTGCTCTGGGAGACACCAAGGTCGTGGTTTTTGGCGGCATG GCCGAACTCATTGCAGGAGCCATCTCCATGGGATTGGGAGGCTACTTGGGTGCGAAGAGCGAAGAGGAGTCCTAC CGCGCAACCCTGAAGGAAACAAAGCAAGAGATTCTAACCGACCCCGCATCGGTGACTGAGACGATCTCGGATGTC TTTGCGCCCTATGACCTCCCCGCAGAGCTGGTGGGAGAGCTCACGCGACACCTCTCCTCATCCCCTAACCTCCCC TCCTTCCTCATGAACTTCCATCACACCGTCCAGGAACCCTCTGGCTCTCGTGCCTTCATCTGTGCCTTGACCATT GCATTGGGATACTTCATCGGTGGCTTCGTGCCACTCCTCCCCTACTTCTTCGTTGGGCCCCATGATGTACTCTCT GCCCTGCGCTGGTCAATCGCCACGATGGCCGTTGCTTTGTTCTTGTTCGGTTACGGCAAGACGTGCTTCGTCAGC GGATGGAAAGGATATCGGAACATCAGACGCGGTGTCATTGGCGGCTTGCAGATGGTTCTAGTCGGAGGCGTTGCA GCAGGCTCTGCAATGGGGCTGGTGAAGGGGTTCCAAATGCTGGCTGACTCTCATAGTCATGAGCATTAG |
| Gene | >Ani_SJS100_1|g10853.t1 ATGTCGATCTCTTCTCTTCGAGGCCTTCTTACCAACTACTCCCCCGTTTCAGAGGAATTCACCCAACCCGATCTG GAAAAGGAGTTGCACGTTTCCCTTCGAAATGGCGACGACAGCGAGTCCTCCTCATCCCGGTCAGTCTGCCGGGAA AAAGCGGAGAAGAAGGAGTCCAAAATCGTTGACGGACGTATCGTCTCCGACGCTATCATCGGTCTCTCCGACGGC ATGACGGTTCCATTTGCCCTGACCGCAGGCTTATCTGCTCTGGGAGACACCAAGGTCGTGGTTTTTGGCGGCATG GCCGAACTCATTGCAGGAGCCATCTCCATGGGATTGGGAGGCTACTTGGGTGCGAAGAGCGAAGAGTGAGTAGTC TTCAAACTTCCCCAAGTATACAAAATTAGCAAAAGAAATATGCTGACCAGTTTTAGGGAGTCCTACCGCGCAACC CTGAAGGAAACAAAGCAAGAGATTCTAACCGACCCCGCATCGGTGACTGAGACGATCTCGGATGTCTTTGCGCCC TATGACCTCCCCGCAGAGCTGGTGGGAGAGCTCACGCGACACCTCTCCTCATCCCCTAACCTCCCCTCCTTCCTC ATGAACTTCCATCACACCGTCCAGGAACCCTCTGGCTCTCGTGCCTTCATCTGTGCCTTGACCATTGCATTGGGA TACTTCATCGGTGGCTTCGTGCCACTCCTCCCCTACTTCTTCGTTGGGCCCCATGATGTACTCTCTGCCCTGCGC TGGTCAATCGCCACGATGGCCGTTGCTTTGTTCTTGTTCGGTTACGGCAAGACGTGCTTCGTCAGCGGATGGAAA GGATATCGGAACATCAGACGCGGTGTCATTGGCGGCTTGCAGATGGTTCTAGTCGGAGGCGTTGCAGCAGGCTCT GCAATGGGGCTGGTGAAGGGGTTCCAAATGCTGGCTGACTCTCATAGTCATGAGCATTAG |