© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS100_1|g10810.t1 |
| Gene name | |
| Location | scaffold_135:31002..32133 |
| Strand | - |
| Gene length (bp) | 1131 |
| Transcript length (bp) | 1002 |
| Coding sequence length (bp) | 1002 |
| Protein length (aa) | 334 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01370 | Epimerase | NAD dependent epimerase/dehydratase family | 5.4E-05 | 5 | 88 |
| PF01370 | Epimerase | NAD dependent epimerase/dehydratase family | 2.0E-06 | 159 | 226 |
| PF13460 | NAD_binding_10 | NAD(P)H-binding | 1.8E-11 | 9 | 123 |
| PF05368 | NmrA | NmrA-like family | 2.1E-06 | 5 | 83 |
| PF01118 | Semialdhyde_dh | Semialdehyde dehydrogenase, NAD binding domain | 4.8E-06 | 4 | 81 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016620 | oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | Yes |
| GO:0051287 | NAD binding | Yes |
| GO:0000166 | nucleotide binding | No |
| GO:0003824 | catalytic activity | No |
| GO:0016491 | oxidoreductase activity | No |
| GO:0016903 | oxidoreductase activity, acting on the aldehyde or oxo group of donors | No |
| GO:0005488 | binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0036094 | small molecule binding | No |
| GO:0003674 | molecular_function | No |
| Orthofinder run ID | 3 |
| Orthogroup | 1065 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g10810.t1 MSPRVFITGATGYVGGQTAVTLIAAHPEYDVVALVRDQEQADKLKSRFPNISTVLGTLDDDAVLKEEAAKADVVL QTASSDHVPAVNSLLSGLANGNGRGRYIHISGTGVLNDMSTGPGNPTSKIYDDVKDIHEIINLPAEALHRNVDDA VITGGMRLNVPTAIVCPPTIYGVGEGPIKKRSMQVPFLTEAILNRGKGFTVGKGENLWDYCHVSDVAKAFLVLTE EALKPNGGSATWGPEGYYFAEAGEFSWKGVSEKVTQIAHEKGKLAAADIEPLAVEDALKFHPWAPVLWGGNCRSR ASRLRALGWKPEGPSLWEAIPSIVEFEIRALGL* |
| Coding | >Ani_SJS100_1|g10810.t1 ATGTCTCCCAGAGTCTTCATCACCGGTGCAACCGGCTACGTTGGTGGCCAGACAGCAGTCACTCTAATTGCTGCG CACCCCGAGTACGACGTCGTGGCACTAGTCCGAGACCAAGAGCAAGCCGATAAGCTCAAGAGCCGCTTCCCCAAC ATCAGTACCGTCCTCGGAACCCTCGATGATGATGCAGTGCTGAAGGAGGAGGCTGCTAAGGCTGATGTTGTGCTG CAAACCGCCAGCTCCGACCACGTCCCTGCTGTGAACTCCCTTCTCAGTGGCCTAGCAAATGGAAATGGAAGAGGG AGATACATTCACATCTCTGGCACGGGCGTTCTTAACGATATGTCGACTGGACCGGGAAACCCTACTTCAAAGATC TACGACGATGTCAAAGACATTCATGAGATTATTAACCTGCCCGCGGAAGCTCTACACCGGAATGTAGATGATGCG GTTATCACAGGTGGAATGCGGCTGAATGTTCCCACAGCAATTGTATGCCCGCCTACTATCTATGGCGTTGGTGAG GGGCCGATCAAGAAGCGGAGCATGCAGGTTCCGTTCTTGACTGAAGCGATTCTAAATCGGGGGAAAGGGTTTACT GTTGGAAAGGGGGAGAATCTCTGGGATTACTGTCACGTCAGCGACGTAGCCAAAGCATTCCTCGTCCTAACTGAA GAAGCACTGAAGCCCAACGGAGGCTCAGCAACCTGGGGCCCAGAGGGATACTATTTTGCCGAGGCCGGCGAGTTC TCATGGAAAGGTGTGAGTGAAAAAGTCACCCAGATTGCTCATGAGAAGGGAAAGCTTGCTGCTGCGGATATCGAA CCACTGGCCGTTGAGGACGCTCTTAAATTCCATCCGTGGGCGCCGGTTCTGTGGGGTGGAAACTGTCGCAGTCGG GCTAGTCGGCTGCGCGCTTTAGGGTGGAAGCCTGAGGGACCGAGCCTTTGGGAGGCCATTCCTAGTATTGTGGAG TTCGAGATTCGTGCTCTTGGATTGTGA |
| Transcript | >Ani_SJS100_1|g10810.t1 ATGTCTCCCAGAGTCTTCATCACCGGTGCAACCGGCTACGTTGGTGGCCAGACAGCAGTCACTCTAATTGCTGCG CACCCCGAGTACGACGTCGTGGCACTAGTCCGAGACCAAGAGCAAGCCGATAAGCTCAAGAGCCGCTTCCCCAAC ATCAGTACCGTCCTCGGAACCCTCGATGATGATGCAGTGCTGAAGGAGGAGGCTGCTAAGGCTGATGTTGTGCTG CAAACCGCCAGCTCCGACCACGTCCCTGCTGTGAACTCCCTTCTCAGTGGCCTAGCAAATGGAAATGGAAGAGGG AGATACATTCACATCTCTGGCACGGGCGTTCTTAACGATATGTCGACTGGACCGGGAAACCCTACTTCAAAGATC TACGACGATGTCAAAGACATTCATGAGATTATTAACCTGCCCGCGGAAGCTCTACACCGGAATGTAGATGATGCG GTTATCACAGGTGGAATGCGGCTGAATGTTCCCACAGCAATTGTATGCCCGCCTACTATCTATGGCGTTGGTGAG GGGCCGATCAAGAAGCGGAGCATGCAGGTTCCGTTCTTGACTGAAGCGATTCTAAATCGGGGGAAAGGGTTTACT GTTGGAAAGGGGGAGAATCTCTGGGATTACTGTCACGTCAGCGACGTAGCCAAAGCATTCCTCGTCCTAACTGAA GAAGCACTGAAGCCCAACGGAGGCTCAGCAACCTGGGGCCCAGAGGGATACTATTTTGCCGAGGCCGGCGAGTTC TCATGGAAAGGTGTGAGTGAAAAAGTCACCCAGATTGCTCATGAGAAGGGAAAGCTTGCTGCTGCGGATATCGAA CCACTGGCCGTTGAGGACGCTCTTAAATTCCATCCGTGGGCGCCGGTTCTGTGGGGTGGAAACTGTCGCAGTCGG GCTAGTCGGCTGCGCGCTTTAGGGTGGAAGCCTGAGGGACCGAGCCTTTGGGAGGCCATTCCTAGTATTGTGGAG TTCGAGATTCGTGCTCTTGGATTGTGA |
| Gene | >Ani_SJS100_1|g10810.t1 ATGTCTCCCAGAGTCTTCATCACCGGTGCAACCGGCTACGTTGGTGGCCAGACAGCAGTCACTCTAATTGCTGCG CACCCCGAGTACGACGTCGTGGCACTAGTCCGAGACCAAGAGCAAGCCGATAAGCTCAAGAGCCGCTTCCCCAAC ATCAGTACCGTCCTCGGAACCCTCGATGATGATGCAGTGCTGAAGGAGGAGGCTGCTAAGGCTGATGTTGTGCTG CGTAAGTCTGCTACTGCCGGCCTCTATAGCCAGGCTTCACCCAATAGTCATCGACTGACATCTTCATACTTCAAC AGAAACCGCCAGCTCCGACCACGTCCCTGCTGTGAACTCCCTTCTCAGTGGCCTAGCAAATGGAAATGGAAGAGG GAGATACATTCACATCTCTGGCACGGGCGTTCTTAACGATATGTCGACTGGACCGGGAAACCCTACTTCAAAGAT CTACGACGATGTCAAAGACATTCATGAGATTATTAACCTGCCCGCGGAAGCTCTACACCGGAATGTAGATGATGC GGTTATCACAGGTGGAATGCGGCTGAATGTTCCCACAGCAATTGTATGCCCGCCTACTATCTATGGCGTTGGTGA GGGGCCGATCAAGAAGCGGAGCATGCAGGTTCCGTTCTTGACTGAAGCGATTCTAAATCGGGGGAAAGGGTTTAC TGTTGGAAAGGGGGAGAATCTCTGGGATTGTGAGTCTCCTTCTACCTCTTTGAAACTTGGAGACAGACCAACATT TATGCAGACTGTCACGTCAGCGACGTAGCCAAAGCATTCCTCGTCCTAACTGAAGAAGCACTGAAGCCCAACGGA GGCTCAGCAACCTGGGGCCCAGAGGGATACTATTTTGCCGAGGCCGGCGAGTTCTCATGGAAAGGTGTGAGTGAA AAAGTCACCCAGATTGCTCATGAGAAGGGAAAGCTTGCTGCTGCGGATATCGAACCACTGGCCGTTGAGGACGCT CTTAAATTCCATCCGTGGGCGCCGGTTCTGTGGGGTGGAAACTGTCGCAGTCGGGCTAGTCGGCTGCGCGCTTTA GGGTGGAAGCCTGAGGGACCGAGCCTTTGGGAGGCCATTCCTAGTATTGTGGAGTTCGAGATTCGTGCTCTTGGA TTGTGA |