© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS100_1|g10555.t1 |
| Gene name | |
| Location | scaffold_121:51318..52591 |
| Strand | + |
| Gene length (bp) | 1273 |
| Transcript length (bp) | 1092 |
| Coding sequence length (bp) | 1092 |
| Protein length (aa) | 364 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00892 | EamA | EamA-like transporter family | 1.7E-06 | 219 | 353 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0016020 | membrane | Yes |
| GO:0110165 | cellular anatomical entity | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0005575 | cellular_component | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 33 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 61 | 83 | 22 |
| 2 | 98 | 115 | 17 |
| 3 | 128 | 146 | 18 |
| 4 | 156 | 178 | 22 |
| 5 | 185 | 204 | 19 |
| 6 | 219 | 238 | 19 |
| 7 | 251 | 273 | 22 |
| 8 | 283 | 305 | 22 |
| 9 | 310 | 332 | 22 |
| 10 | 336 | 358 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g10555.t1 MVVAGSNLRDDECKGLLTSVTCSPASPPPPQSDDVKLELGYYSYEDEKRPEVLSEEPEKQIGSVRLLVWMTINIV ATVAIVFTNKSILSNASFRNSQVSFAAYHFTITGLTLWLASRPCCGWFEPKHVSPYRILHLVAAMCIQVIFQNLA LAYSSVIFHQLARLLLTPATALLNFALFQSSIPRAAFLPLVLLCTGVGIVSYFDSLPSAKGNDTTTPEGIFFALS GVCASALYTVLVGRYHKKLEMSSMQLLLNQAPVSAAVLLCVVPWMETFPEVAAVPGSLWTSILASGIFACLVNLS QFYIIDAAGPVTSTVIGQLKTCVIVGLGWVLSDHEILRQSVAGILMALTGMSLYMKIILRHQS* |
| Coding | >Ani_SJS100_1|g10555.t1 ATGGTTGTTGCAGGATCGAATCTGCGGGATGATGAGTGCAAGGGTCTATTGACTTCAGTGACTTGCAGTCCTGCA AGCCCACCACCACCACAATCGGACGATGTGAAGCTTGAGTTGGGATACTATTCGTACGAGGACGAAAAGAGACCT GAAGTGTTGTCTGAGGAGCCGGAAAAGCAGATAGGGAGTGTTCGGCTTCTTGTATGGATGACAATCAATATTGTT GCGACTGTTGCCATCGTATTCACCAACAAATCCATCCTCTCCAATGCATCTTTCCGCAACTCGCAAGTATCCTTC GCCGCCTATCATTTCACCATCACCGGGCTCACACTATGGCTGGCATCGCGGCCATGCTGCGGCTGGTTCGAACCC AAGCACGTATCGCCCTACCGCATCCTCCACCTCGTCGCGGCTATGTGCATCCAGGTCATCTTTCAGAACCTGGCA CTGGCTTATTCGTCGGTAATCTTTCACCAGCTGGCGCGGTTGCTCCTTACGCCTGCTACGGCGTTGTTGAATTTT GCGCTGTTCCAGTCCAGCATCCCCAGAGCGGCGTTCCTTCCCCTGGTCCTACTGTGCACGGGAGTTGGAATTGTC TCCTACTTTGATTCGCTCCCGTCCGCGAAAGGCAACGATACCACGACACCAGAGGGTATTTTCTTCGCTTTGTCT GGTGTGTGCGCTAGTGCACTGTACACGGTCCTGGTGGGCCGGTATCATAAGAAGCTGGAGATGAGCAGTATGCAG CTTCTACTTAATCAGGCCCCTGTCAGTGCTGCTGTCCTGTTGTGTGTTGTTCCATGGATGGAGACGTTTCCGGAG GTTGCGGCTGTCCCTGGGTCGTTGTGGACTTCGATACTTGCGAGTGGAATATTCGCTTGTCTGGTGAACCTATCT CAGTTCTATATTATTGATGCTGCCGGGCCGGTTACGAGCACGGTGATCGGACAGCTCAAGACCTGCGTCATTGTA GGGTTGGGATGGGTGCTGAGTGACCATGAGATTCTGCGGCAGAGTGTCGCGGGTATTTTGATGGCTTTGACGGGG ATGAGCTTGTACATGAAGATAATCCTAAGGCATCAATCATGA |
| Transcript | >Ani_SJS100_1|g10555.t1 ATGGTTGTTGCAGGATCGAATCTGCGGGATGATGAGTGCAAGGGTCTATTGACTTCAGTGACTTGCAGTCCTGCA AGCCCACCACCACCACAATCGGACGATGTGAAGCTTGAGTTGGGATACTATTCGTACGAGGACGAAAAGAGACCT GAAGTGTTGTCTGAGGAGCCGGAAAAGCAGATAGGGAGTGTTCGGCTTCTTGTATGGATGACAATCAATATTGTT GCGACTGTTGCCATCGTATTCACCAACAAATCCATCCTCTCCAATGCATCTTTCCGCAACTCGCAAGTATCCTTC GCCGCCTATCATTTCACCATCACCGGGCTCACACTATGGCTGGCATCGCGGCCATGCTGCGGCTGGTTCGAACCC AAGCACGTATCGCCCTACCGCATCCTCCACCTCGTCGCGGCTATGTGCATCCAGGTCATCTTTCAGAACCTGGCA CTGGCTTATTCGTCGGTAATCTTTCACCAGCTGGCGCGGTTGCTCCTTACGCCTGCTACGGCGTTGTTGAATTTT GCGCTGTTCCAGTCCAGCATCCCCAGAGCGGCGTTCCTTCCCCTGGTCCTACTGTGCACGGGAGTTGGAATTGTC TCCTACTTTGATTCGCTCCCGTCCGCGAAAGGCAACGATACCACGACACCAGAGGGTATTTTCTTCGCTTTGTCT GGTGTGTGCGCTAGTGCACTGTACACGGTCCTGGTGGGCCGGTATCATAAGAAGCTGGAGATGAGCAGTATGCAG CTTCTACTTAATCAGGCCCCTGTCAGTGCTGCTGTCCTGTTGTGTGTTGTTCCATGGATGGAGACGTTTCCGGAG GTTGCGGCTGTCCCTGGGTCGTTGTGGACTTCGATACTTGCGAGTGGAATATTCGCTTGTCTGGTGAACCTATCT CAGTTCTATATTATTGATGCTGCCGGGCCGGTTACGAGCACGGTGATCGGACAGCTCAAGACCTGCGTCATTGTA GGGTTGGGATGGGTGCTGAGTGACCATGAGATTCTGCGGCAGAGTGTCGCGGGTATTTTGATGGCTTTGACGGGG ATGAGCTTGTACATGAAGATAATCCTAAGGCATCAATCATGA |
| Gene | >Ani_SJS100_1|g10555.t1 ATGGTTGTTGCAGGATCGAATCTGCGGGATGATGAGTGCAAGGGTCTATTGACTTCAGTGACTTGCAGTCCTGCA AGCCCACCACCACCACAATCGGACGATGTGAAGCTTGAGTTGGGATACTATTCGTACGAGGACGAAAAGAGACCT GAAGTGTTGTCTGAGGAGCCGGAAAAGCAGATAGGGAGTGTTCGGCTTCTTGTATGGATGACAATCAATATTGTT GCGACTGTTGCCATCGTATGTTCCTATCATGCTGAACTTGAACATGAATAATAGTCACTGACAAACACGCAGGTA TTCACCAACAAATCCATCCTCTCCAATGCATCTTTCCGCAACTCGCAAGTATCCTTCGCCGCCTATCATTTCACC ATCACCGGGCTCACACTATGGCTGGCATCGCGGCCATGCTGCGGCTGGTTCGAACCCAAGCACGTATCGCCCTAC CGCATCCTCCACCTCGTCGCGGCTATGTGCATCCAGGTCATCTTTCAGAACCTGGCACTGGCTTATTCGTCGGTA ATCTTTCACCAGCTGGCGCGGTTGCTCCTTACGCCTGCTACGGCGTTGTTGAATTTTGCGCTGTTCCAGTCCAGC ATCCCCAGAGCGGCGTTCCTTCCCCTGGTCCTACTGTGCACGGGAGTTGGAATTGTCTCCTACTTTGATTCGCTC CCGTCCGCGAAAGGCAACGATACCACGACACCAGAGGGTATTTTCTTCGCTTTGTCTGGTGTGTGCGCTAGTGCA CTGTACACGGTCCTGGTGGGCCGGTATCATAAGAAGCTGGAGATGAGCAGTATGCAGCTTCTACTTAATCAGGCC CCTGTCAGTGCTGCTGTCCTGTTGTGTGTTGTTCCATGGATGGAGACGTTTCCGGAGGTTGCGGCTGTCCCTGGG TCGTTGTGGACTTCGATACTTGCGGTAAGCTGACTTTTATGTGCTTTTTGTCTGACAATCGATTAAGATAGAAAA GTGGCTGATGTATGCTTTGCAGAGTGGAATATTCGCTTGTCTGGTGAACCTATCTCAGTTCTATATTATTGATGC TGCCGGGCCGGTTACGAGCACGGTGATCGGACAGCTCAAGACCTGCGTCATTGTAGGGTTGGGATGGGTGCTGAG TGACCATGAGATTCTGCGGCAGAGTGTCGCGGGTATTTTGATGGCTTTGACGGGGATGAGCTTGTGAGTTACCTT GTCTTTATGGTTGATTCTGATATGACTGACGTTCTGTAGGTACATGAAGATAATCCTAAGGCATCAATCATGA |