© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ani_SJS100_1|g10530.t1 |
| Gene name | |
| Location | scaffold_120:26803..28165 |
| Strand | + |
| Gene length (bp) | 1362 |
| Transcript length (bp) | 1362 |
| Coding sequence length (bp) | 1362 |
| Protein length (aa) | 454 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02537 | CRCB | CrcB-like protein, Camphor Resistance (CrcB) | 2.3E-12 | 91 | 203 |
| PF02537 | CRCB | CrcB-like protein, Camphor Resistance (CrcB) | 2.0E-22 | 320 | 434 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0005575 | cellular_component | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0031224 | intrinsic component of membrane | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 24 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 81 | 103 | 22 |
| 2 | 118 | 135 | 17 |
| 3 | 171 | 193 | 22 |
| 4 | 231 | 253 | 22 |
| 5 | 277 | 299 | 22 |
| 6 | 314 | 336 | 22 |
| 7 | 343 | 365 | 22 |
| 8 | 388 | 410 | 22 |
| 9 | 417 | 439 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g10530.t1 MVVLTDTMHSCPASPATLNEVAAPPVYDASQKFLRQNDCLENQQSDSASSGGVSSESDVMRIREPDYSQEKQTKP GRMSKFLQTTFIVSYLIVFSIIGTLLRLAIESPTFYPGTPVNTRVLWANFGGSMIMGFLSEDQKLFHLESVGSTV PGHVREDPLRRAAHLKAHKKTVPLFIGLTAGFCGSLTSFSTFMRDVFLAFSNDLAVPSDPYSQVSLFTSSSAELR AQNGGFSFMALVAVLFTEIGLSLAGFFLGTDIAIALGRWTPTLPQTWLRKYLNPLVVVLACLTWIIIICLVILLP QQQKTTMLWNSYIWQGPFLFSLVFAPVGCLARFCVSLKLNNRVAGFPLGTFVVNTGGTMLLGMAFTLQHAPVNPS RLDMGGLTGCEVLQGIMDGFCGCLTTVSTWVLELSDLRRQQAYVYGGVSVAVALCFLVVEIGSLRWTEGLATPAC FAR* |
| Coding | >Ani_SJS100_1|g10530.t1 ATGGTTGTCCTGACGGACACAATGCACTCGTGTCCTGCAAGCCCAGCCACCCTCAATGAAGTCGCCGCTCCTCCT GTCTATGATGCGTCGCAGAAGTTCCTACGGCAAAATGATTGCTTGGAAAACCAACAGTCTGACTCTGCTAGTTCT GGAGGGGTCAGCAGTGAATCGGACGTTATGCGAATTCGCGAGCCTGACTACTCTCAAGAGAAGCAGACGAAGCCC GGACGCATGTCAAAGTTTTTGCAGACGACGTTTATTGTATCATATCTGATTGTATTCTCAATCATCGGCACGCTC CTCCGCTTGGCTATCGAATCCCCAACGTTCTATCCGGGGACCCCAGTCAATACAAGGGTTCTGTGGGCGAACTTC GGGGGCAGCATGATCATGGGCTTCCTGAGTGAGGATCAAAAGTTGTTCCACTTGGAAAGCGTTGGATCTACAGTT CCTGGACATGTGAGGGAGGACCCATTACGGCGTGCTGCACACTTGAAGGCCCACAAGAAGACAGTCCCCTTGTTC ATTGGTCTGACCGCCGGTTTCTGTGGAAGTCTCACATCCTTCTCCACTTTCATGCGCGATGTCTTCCTCGCTTTC TCAAATGATCTAGCCGTGCCAAGCGACCCGTACTCCCAAGTCTCTTTATTCACATCTAGCTCGGCAGAACTAAGA GCTCAGAACGGCGGGTTTAGCTTCATGGCACTTGTTGCAGTTCTCTTCACGGAGATCGGTCTCTCTCTGGCAGGT TTCTTTCTCGGAACCGATATTGCAATTGCCCTAGGCCGATGGACCCCTACTCTGCCTCAGACATGGCTGCGAAAA TACTTGAATCCCCTTGTAGTAGTCCTAGCTTGTCTCACCTGGATTATAATTATCTGTCTAGTGATACTACTACCC CAGCAGCAAAAGACAACCATGCTGTGGAACTCATATATATGGCAGGGCCCATTTCTATTCTCCCTCGTTTTTGCA CCCGTTGGCTGCCTAGCACGGTTTTGTGTTTCCCTTAAGCTCAATAACCGGGTAGCCGGTTTTCCTCTGGGAACA TTTGTGGTTAATACAGGGGGTACAATGTTACTGGGAATGGCATTCACCTTACAGCATGCTCCCGTCAACCCTTCT CGACTAGATATGGGAGGCCTCACTGGCTGCGAGGTCTTGCAAGGAATTATGGATGGATTTTGTGGGTGTTTGACA ACCGTAAGCACTTGGGTTCTGGAACTCTCCGATCTGCGTCGACAACAGGCCTATGTTTATGGTGGTGTGAGCGTT GCAGTCGCCCTTTGTTTCCTGGTGGTGGAAATTGGAAGCTTGCGGTGGACTGAAGGGCTCGCCACACCTGCATGT TTTGCTCGATAG |
| Transcript | >Ani_SJS100_1|g10530.t1 ATGGTTGTCCTGACGGACACAATGCACTCGTGTCCTGCAAGCCCAGCCACCCTCAATGAAGTCGCCGCTCCTCCT GTCTATGATGCGTCGCAGAAGTTCCTACGGCAAAATGATTGCTTGGAAAACCAACAGTCTGACTCTGCTAGTTCT GGAGGGGTCAGCAGTGAATCGGACGTTATGCGAATTCGCGAGCCTGACTACTCTCAAGAGAAGCAGACGAAGCCC GGACGCATGTCAAAGTTTTTGCAGACGACGTTTATTGTATCATATCTGATTGTATTCTCAATCATCGGCACGCTC CTCCGCTTGGCTATCGAATCCCCAACGTTCTATCCGGGGACCCCAGTCAATACAAGGGTTCTGTGGGCGAACTTC GGGGGCAGCATGATCATGGGCTTCCTGAGTGAGGATCAAAAGTTGTTCCACTTGGAAAGCGTTGGATCTACAGTT CCTGGACATGTGAGGGAGGACCCATTACGGCGTGCTGCACACTTGAAGGCCCACAAGAAGACAGTCCCCTTGTTC ATTGGTCTGACCGCCGGTTTCTGTGGAAGTCTCACATCCTTCTCCACTTTCATGCGCGATGTCTTCCTCGCTTTC TCAAATGATCTAGCCGTGCCAAGCGACCCGTACTCCCAAGTCTCTTTATTCACATCTAGCTCGGCAGAACTAAGA GCTCAGAACGGCGGGTTTAGCTTCATGGCACTTGTTGCAGTTCTCTTCACGGAGATCGGTCTCTCTCTGGCAGGT TTCTTTCTCGGAACCGATATTGCAATTGCCCTAGGCCGATGGACCCCTACTCTGCCTCAGACATGGCTGCGAAAA TACTTGAATCCCCTTGTAGTAGTCCTAGCTTGTCTCACCTGGATTATAATTATCTGTCTAGTGATACTACTACCC CAGCAGCAAAAGACAACCATGCTGTGGAACTCATATATATGGCAGGGCCCATTTCTATTCTCCCTCGTTTTTGCA CCCGTTGGCTGCCTAGCACGGTTTTGTGTTTCCCTTAAGCTCAATAACCGGGTAGCCGGTTTTCCTCTGGGAACA TTTGTGGTTAATACAGGGGGTACAATGTTACTGGGAATGGCATTCACCTTACAGCATGCTCCCGTCAACCCTTCT CGACTAGATATGGGAGGCCTCACTGGCTGCGAGGTCTTGCAAGGAATTATGGATGGATTTTGTGGGTGTTTGACA ACCGTAAGCACTTGGGTTCTGGAACTCTCCGATCTGCGTCGACAACAGGCCTATGTTTATGGTGGTGTGAGCGTT GCAGTCGCCCTTTGTTTCCTGGTGGTGGAAATTGGAAGCTTGCGGTGGACTGAAGGGCTCGCCACACCTGCATGT TTTGCTCGATAG |
| Gene | >Ani_SJS100_1|g10530.t1 ATGGTTGTCCTGACGGACACAATGCACTCGTGTCCTGCAAGCCCAGCCACCCTCAATGAAGTCGCCGCTCCTCCT GTCTATGATGCGTCGCAGAAGTTCCTACGGCAAAATGATTGCTTGGAAAACCAACAGTCTGACTCTGCTAGTTCT GGAGGGGTCAGCAGTGAATCGGACGTTATGCGAATTCGCGAGCCTGACTACTCTCAAGAGAAGCAGACGAAGCCC GGACGCATGTCAAAGTTTTTGCAGACGACGTTTATTGTATCATATCTGATTGTATTCTCAATCATCGGCACGCTC CTCCGCTTGGCTATCGAATCCCCAACGTTCTATCCGGGGACCCCAGTCAATACAAGGGTTCTGTGGGCGAACTTC GGGGGCAGCATGATCATGGGCTTCCTGAGTGAGGATCAAAAGTTGTTCCACTTGGAAAGCGTTGGATCTACAGTT CCTGGACATGTGAGGGAGGACCCATTACGGCGTGCTGCACACTTGAAGGCCCACAAGAAGACAGTCCCCTTGTTC ATTGGTCTGACCGCCGGTTTCTGTGGAAGTCTCACATCCTTCTCCACTTTCATGCGCGATGTCTTCCTCGCTTTC TCAAATGATCTAGCCGTGCCAAGCGACCCGTACTCCCAAGTCTCTTTATTCACATCTAGCTCGGCAGAACTAAGA GCTCAGAACGGCGGGTTTAGCTTCATGGCACTTGTTGCAGTTCTCTTCACGGAGATCGGTCTCTCTCTGGCAGGT TTCTTTCTCGGAACCGATATTGCAATTGCCCTAGGCCGATGGACCCCTACTCTGCCTCAGACATGGCTGCGAAAA TACTTGAATCCCCTTGTAGTAGTCCTAGCTTGTCTCACCTGGATTATAATTATCTGTCTAGTGATACTACTACCC CAGCAGCAAAAGACAACCATGCTGTGGAACTCATATATATGGCAGGGCCCATTTCTATTCTCCCTCGTTTTTGCA CCCGTTGGCTGCCTAGCACGGTTTTGTGTTTCCCTTAAGCTCAATAACCGGGTAGCCGGTTTTCCTCTGGGAACA TTTGTGGTTAATACAGGGGGTACAATGTTACTGGGAATGGCATTCACCTTACAGCATGCTCCCGTCAACCCTTCT CGACTAGATATGGGAGGCCTCACTGGCTGCGAGGTCTTGCAAGGAATTATGGATGGATTTTGTGGGTGTTTGACA ACCGTAAGCACTTGGGTTCTGGAACTCTCCGATCTGCGTCGACAACAGGCCTATGTTTATGGTGGTGTGAGCGTT GCAGTCGCCCTTTGTTTCCTGGTGGTGGAAATTGGAAGCTTGCGGTGGACTGAAGGGCTCGCCACACCTGCATGT TTTGCTCGATAG |