© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS100_1|g10494.t1 |
| Gene name | |
| Location | scaffold_119:7631..8628 |
| Strand | + |
| Gene length (bp) | 997 |
| Transcript length (bp) | 861 |
| Coding sequence length (bp) | 861 |
| Protein length (aa) | 287 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04479 | RTA1 | RTA1 like protein | 5.0E-71 | 50 | 258 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0005575 | cellular_component | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0031224 | intrinsic component of membrane | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 43 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 15 | 37 | 22 |
| 2 | 44 | 66 | 22 |
| 3 | 86 | 108 | 22 |
| 4 | 120 | 142 | 22 |
| 5 | 157 | 179 | 22 |
| 6 | 200 | 219 | 19 |
| 7 | 234 | 256 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g10494.t1 MGVAIRSGFEYYYYYPSLAAAVIFIICFLLTTLLHTFQLVRTKTWFFIPFLIGGYFEFVGYCARAVSANQSPNWT MGPFLINSLLPLVAPALFAASIYMELGRLIIVLHAQPHSLIRVKWLTKIFVTGDVLSFLLQAGGAGLMGSHSKSG TETGSHIIVGGLVVQIVFFGFFIITTAIFHHRMLQSPTPYSLEINWKKLIWVLYSASVLILVRSIYRLIEYIEGF GGYLLSHEVYLYVFDALLMFAVMLIFHVVHPSELNAWLKSGGLVSKGFRFERLNGNAIPIS* |
| Coding | >Ani_SJS100_1|g10494.t1 ATGGGGGTTGCAATCCGTTCAGGCTTTGAATATTACTATTACTACCCCTCTCTGGCAGCGGCGGTGATATTCATC ATCTGTTTCCTGCTAACCACGCTCTTGCACACGTTCCAGCTCGTCCGGACGAAAACATGGTTCTTTATACCGTTC CTTATCGGGGGCTACTTTGAATTTGTAGGCTACTGCGCCCGTGCCGTCTCTGCCAACCAATCCCCCAATTGGACC ATGGGCCCTTTCCTGATCAACTCGCTCCTTCCTCTGGTTGCACCTGCGCTCTTTGCGGCTAGTATATATATGGAA TTGGGGAGATTGATCATCGTTCTTCATGCTCAACCACACAGCCTCATTCGAGTGAAATGGTTGACCAAGATCTTC GTCACCGGTGATGTTCTATCATTTCTGCTTCAAGCTGGAGGGGCTGGTCTCATGGGTAGTCACTCTAAAAGCGGT ACTGAAACAGGGTCGCATATCATTGTTGGCGGTCTCGTCGTCCAGATTGTTTTCTTCGGTTTCTTCATCATAACC ACCGCAATTTTCCACCATCGCATGCTACAAAGTCCGACACCATACTCCCTTGAAATAAACTGGAAAAAGCTCATC TGGGTATTGTACTCAGCTAGCGTGCTCATTCTTGTGCGGTCGATTTACCGTCTTATCGAGTATATCGAAGGGTTT GGGGGATATTTGCTTTCTCATGAGGTGTACCTCTATGTATTTGACGCGTTGCTTATGTTTGCGGTCATGCTGATA TTCCATGTCGTTCACCCGAGCGAGCTCAATGCTTGGTTGAAGTCGGGCGGGCTAGTTAGCAAAGGGTTTCGGTTC GAAAGGCTGAACGGGAATGCGATACCCATCAGCTGA |
| Transcript | >Ani_SJS100_1|g10494.t1 ATGGGGGTTGCAATCCGTTCAGGCTTTGAATATTACTATTACTACCCCTCTCTGGCAGCGGCGGTGATATTCATC ATCTGTTTCCTGCTAACCACGCTCTTGCACACGTTCCAGCTCGTCCGGACGAAAACATGGTTCTTTATACCGTTC CTTATCGGGGGCTACTTTGAATTTGTAGGCTACTGCGCCCGTGCCGTCTCTGCCAACCAATCCCCCAATTGGACC ATGGGCCCTTTCCTGATCAACTCGCTCCTTCCTCTGGTTGCACCTGCGCTCTTTGCGGCTAGTATATATATGGAA TTGGGGAGATTGATCATCGTTCTTCATGCTCAACCACACAGCCTCATTCGAGTGAAATGGTTGACCAAGATCTTC GTCACCGGTGATGTTCTATCATTTCTGCTTCAAGCTGGAGGGGCTGGTCTCATGGGTAGTCACTCTAAAAGCGGT ACTGAAACAGGGTCGCATATCATTGTTGGCGGTCTCGTCGTCCAGATTGTTTTCTTCGGTTTCTTCATCATAACC ACCGCAATTTTCCACCATCGCATGCTACAAAGTCCGACACCATACTCCCTTGAAATAAACTGGAAAAAGCTCATC TGGGTATTGTACTCAGCTAGCGTGCTCATTCTTGTGCGGTCGATTTACCGTCTTATCGAGTATATCGAAGGGTTT GGGGGATATTTGCTTTCTCATGAGGTGTACCTCTATGTATTTGACGCGTTGCTTATGTTTGCGGTCATGCTGATA TTCCATGTCGTTCACCCGAGCGAGCTCAATGCTTGGTTGAAGTCGGGCGGGCTAGTTAGCAAAGGGTTTCGGTTC GAAAGGCTGAACGGGAATGCGATACCCATCAGCTGA |
| Gene | >Ani_SJS100_1|g10494.t1 ATGGGGGTTGCAATCCGTTCAGGCTTTGAATATTACTATTACTACCCCTCTCTGGCAGCGGCGGTGATATTCATC ATCTGTTTCCTGCTAACCACGCTCTTGCACACGTTCCAGCTCGTCCGGACGAAAACATGGTTCTTTATACCGTTC CTTATCGGGGGCTACTGTGAGTCAAGACGAAGATTATACAAAATATTGGGCACTTATTCCTAATGTGTTTGTTTC ACTGCAGTTGAATTTGTAGGCTACTGCGCCCGTGCCGTCTCTGCCAACCAATCCCCCAATTGGACCATGGGCCCT TTCCTGATCAACTCGCTCCTTCCTCTGGTTGCACCTGCGCTCTTTGCGGCTAGTATATATATGGAATTGGGGAGA TTGATCATCGTTCTTCATGCTCAACCACACAGCCTCATTCGAGTGAAATGGTTGACCAAGATCTTCGTCACCGGT GATGTTCTATCATTTCTGCTTCAAGCTGGAGGTAAGGAGCACTTGCAGTTGCCGAGAAATCGCTACAAACTCATG CTAAATCCTCAATCTTCCACCTGCAGGGGCTGGTCTCATGGGTAGTCACTCTAAAAGCGGTACTGAAACAGGGTC GCATATCATTGTTGGCGGTCTCGTCGTCCAGATTGTTTTCTTCGGTTTCTTCATCATAACCACCGCAATTTTCCA CCATCGCATGCTACAAAGTCCGACACCATACTCCCTTGAAATAAACTGGAAAAAGCTCATCTGGGTATTGTACTC AGCTAGCGTGCTCATTCTTGTGCGGTCGATTTACCGTCTTATCGAGTATATCGAAGGGTTTGGGGGATATTTGCT TTCTCATGAGGTGTACCTCTATGTATTTGACGCGTTGCTTATGTTTGCGGTCATGCTGATATTCCATGTCGTTCA CCCGAGCGAGCTCAATGCTTGGTTGAAGTCGGGCGGGCTAGTTAGCAAAGGGTTTCGGTTCGAAAGGCTGAACGG GAATGCGATACCCATCAGCTGA |