Fungal Genomics

Agaricus bisporus var bisporus H39 Agaricus bisporus var bisporus H97 Agaricus bisporus var burnettii H119p4 Aspergillus niger CBS 112.32 Aspergillus niger CBS 113.50 Aspergillus niger CBS 115988 Aspergillus niger CBS 115989 Aspergillus niger CBS 118.52 Aspergillus niger CBS 124.48 Aspergillus niger CBS 131.52 Aspergillus niger CBS 133816 Aspergillus niger CBS 147320 Aspergillus niger CBS 147321 Aspergillus niger CBS 147322 Aspergillus niger CBS 147323 Aspergillus niger CBS 147324 Aspergillus niger CBS 147343 Aspergillus niger CBS 147344 Aspergillus niger CBS 147345 Aspergillus niger CBS 147346 Aspergillus niger CBS 147347 Aspergillus niger CBS 147352 Aspergillus niger CBS 147353 Aspergillus niger CBS 147371 Aspergillus niger CBS 147482 Aspergillus niger CBS 630.78 Aspergillus niger CBS 769.97 Niveomyces coronatus CBS 149186 Ophiocordyceps australis 1348a (Ghana) Ophiocordyceps australis map64 (Brazil) Ophiocordyceps camponoti-floridani Ophiocordyceps camponoti-rufipedis Ophiocordyceps kimflemingae Ophiocordyceps subramaniannii Penicillium roqueforti DTO002I6 Penicillium roqueforti DTO003C3 Penicillium roqueforti DTO003H1 (CBS 147308) Penicillium roqueforti DTO006G1 Penicillium roqueforti DTO006G7 Penicillium roqueforti DTO012A1 Penicillium roqueforti DTO012A2 (CBS 147309) Penicillium roqueforti DTO012A6 (CBS 147310) Penicillium roqueforti DTO012A7 Penicillium roqueforti DTO012A8 Penicillium roqueforti DTO012A9 Penicillium roqueforti DTO013E5 Penicillium roqueforti DTO013F2 Penicillium roqueforti DTO013F5 (CBS 147311) Penicillium roqueforti DTO027I6 Penicillium roqueforti DTO032C6 Penicillium roqueforti DTO039G3 Penicillium roqueforti DTO046C5 Penicillium roqueforti DTO070G2 (CBS 147317) Penicillium roqueforti DTO081F9 (CBS 147318) Penicillium roqueforti DTO101D6 (CBS 147325) Penicillium roqueforti DTO102I9 (CBS 147326) Penicillium roqueforti DTO126G2 (CBS 147330) Penicillium roqueforti DTO127F7 (CBS 147331) Penicillium roqueforti DTO127F9 (CBS 147332) Penicillium roqueforti DTO130C1 (CBS 147333) Penicillium roqueforti DTO163C3 (CBS 147337) Penicillium roqueforti DTO163F5 (CBS 147338) Penicillium roqueforti DTO163G4 (CBS 147339) Penicillium roqueforti DTO265D5 (CBS 147372) Penicillium roqueforti DTO369A1 (CBS 147354) Penicillium roqueforti DTO375B1 (CBS 147355) Penicillium roqueforti DTO377G2 (LCP 96.3914a) Penicillium roqueforti LCP96 04111 Rhodonia placenta FPRL280 Torrubiellomyces zombiae CBS 149187

General Properties

Protein ID	Ani_SJS100_1|g10486.t1
Gene name
Location	scaffold_118:50915..53238
Strand	-
Gene length (bp)	2323
Transcript length (bp)	2127
Coding sequence length (bp)	2127
Protein length (aa)	709

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PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF05793	TFIIF_alpha	Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)	2.5E-08	237	327

GO

GO Term	Description	Terminal node
GO:0005634	nucleus	Yes
GO:0006367	transcription initiation from RNA polymerase II promoter	Yes
GO:0032968	positive regulation of transcription elongation from RNA polymerase II promoter	Yes
GO:0003677	DNA binding	Yes
GO:0051252	regulation of RNA metabolic process	No
GO:1902680	positive regulation of RNA biosynthetic process	No
GO:1903508	positive regulation of nucleic acid-templated transcription	No
GO:0071704	organic substance metabolic process	No
GO:0003674	molecular_function	No
GO:0010557	positive regulation of macromolecule biosynthetic process	No
GO:0043226	organelle	No
GO:0009987	cellular process	No
GO:0051254	positive regulation of RNA metabolic process	No
GO:0008152	metabolic process	No
GO:0048522	positive regulation of cellular process	No
GO:0009058	biosynthetic process	No
GO:0034641	cellular nitrogen compound metabolic process	No
GO:0008150	biological_process	No
GO:0010468	regulation of gene expression	No
GO:0031328	positive regulation of cellular biosynthetic process	No
GO:0018130	heterocycle biosynthetic process	No
GO:1903506	regulation of nucleic acid-templated transcription	No
GO:0009891	positive regulation of biosynthetic process	No
GO:0016070	RNA metabolic process	No
GO:0031323	regulation of cellular metabolic process	No
GO:0060255	regulation of macromolecule metabolic process	No
GO:0050789	regulation of biological process	No
GO:0010556	regulation of macromolecule biosynthetic process	No
GO:0019219	regulation of nucleobase-containing compound metabolic process	No
GO:0031326	regulation of cellular biosynthetic process	No
GO:0006357	regulation of transcription by RNA polymerase II	No
GO:0003676	nucleic acid binding	No
GO:0019438	aromatic compound biosynthetic process	No
GO:2001141	regulation of RNA biosynthetic process	No
GO:0032784	regulation of DNA-templated transcription, elongation	No
GO:0006807	nitrogen compound metabolic process	No
GO:0046483	heterocycle metabolic process	No
GO:0009893	positive regulation of metabolic process	No
GO:0006355	regulation of transcription, DNA-templated	No
GO:1901360	organic cyclic compound metabolic process	No
GO:0010604	positive regulation of macromolecule metabolic process	No
GO:0043229	intracellular organelle	No
GO:0005575	cellular_component	No
GO:0097159	organic cyclic compound binding	No
GO:0009889	regulation of biosynthetic process	No
GO:0090304	nucleic acid metabolic process	No
GO:0032786	positive regulation of DNA-templated transcription, elongation	No
GO:0043170	macromolecule metabolic process	No
GO:0048518	positive regulation of biological process	No
GO:0044238	primary metabolic process	No
GO:0031325	positive regulation of cellular metabolic process	No
GO:0051171	regulation of nitrogen compound metabolic process	No
GO:0110165	cellular anatomical entity	No
GO:0045935	positive regulation of nucleobase-containing compound metabolic process	No
GO:0044237	cellular metabolic process	No
GO:1901362	organic cyclic compound biosynthetic process	No
GO:0006725	cellular aromatic compound metabolic process	No
GO:0006139	nucleobase-containing compound metabolic process	No
GO:0009059	macromolecule biosynthetic process	No
GO:0045944	positive regulation of transcription by RNA polymerase II	No
GO:0044249	cellular biosynthetic process	No
GO:0034243	regulation of transcription elongation from RNA polymerase II promoter	No
GO:0065007	biological regulation	No
GO:0044271	cellular nitrogen compound biosynthetic process	No
GO:1901363	heterocyclic compound binding	No
GO:0006352	DNA-templated transcription, initiation	No
GO:1901576	organic substance biosynthetic process	No
GO:0050794	regulation of cellular process	No
GO:0005488	binding	No
GO:0019222	regulation of metabolic process	No
GO:0051173	positive regulation of nitrogen compound metabolic process	No
GO:0045893	positive regulation of transcription, DNA-templated	No
GO:0043231	intracellular membrane-bounded organelle	No
GO:0034654	nucleobase-containing compound biosynthetic process	No
GO:0043227	membrane-bounded organelle	No
GO:0080090	regulation of primary metabolic process	No
GO:0032774	RNA biosynthetic process	No

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 41	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Ani_SJS100_1|g10486.t1 MTTPTNDQTLKTPTGSNGPPPVRIRRPKVADPLVRPKRRPAIRPPAPTSAANGASRMPNSRPVTSSQLPGARVEK SLNPKNDFSANGFSGPLLSENYVDYPIVTTRRALREGLKHHIARFTSKKSVDPRDESQFTRPVRLQRRDPRARPN EAHVERGQLNSKPGSEQSTQMDELEREELEARKAAREKERAENMAQIAPSVGSAPKRHNAPKQKTQQVTKTDMTP EEIARTRIKYEEALPWHLEDFDNKNIWVGNYEAALSETHAVFVLENTGKMRMIPVEKWYRFSAKNTFKALTIEEA ERLMAKKIKDPRWFMEKQQEQAQRKELEQFARQQKVYAGKQGTPGGVEGLEADEMDFEEDRFADDEEHDDLFNED EEAKAAEKRIKQDQLKANVFDLKNEKDYEEEELREKREKEARRVLGKKVRKALQKREKNYDYSSGSDVNPYSDEE SSDESEAERQKEEEGKVEEDKSKKEPSKGNLTPSGRLRHADPAKKGSAAAPRKRLGSPSDASGTDTSRKKGKSKH PSSQPTPQPPSRPMSPSASSLPVSKKRVRNVLAGSAGSASDVDGGAGSGGEMSESGKVKKLKLNPPSVASQSVTP QGSRAGSPAPLGSKSFSGSRASSPESLRGPTRISTPGPSGSAQGFPTPAEIHAAIPQSGIGSSDLLRIFRPRIGE SKENHRRFIAIVKDVGVYGKEDRLLRPGSLKET*
Coding	>Ani_SJS100_1|g10486.t1 ATGACCACACCTACTAATGATCAGACTCTCAAGACCCCGACGGGGTCGAACGGTCCTCCACCAGTGAGGATTCGC CGGCCAAAAGTGGCGGATCCCCTCGTGCGACCAAAGAGGAGACCGGCAATAAGACCCCCAGCTCCTACCTCGGCA GCAAACGGCGCATCAAGGATGCCTAACTCAAGACCAGTCACTTCAAGCCAGCTACCAGGGGCTCGCGTCGAGAAA AGCCTGAACCCGAAGAATGATTTTTCGGCAAACGGATTCAGCGGCCCGTTGTTGTCTGAGAATTACGTTGATTAC CCCATCGTGACTACAAGACGAGCATTGCGCGAAGGCTTGAAGCACCATATCGCCAGGTTCACCTCGAAAAAGTCC GTCGATCCTCGCGATGAAAGTCAGTTTACTCGCCCTGTTAGGCTCCAGCGCCGAGATCCACGAGCACGGCCGAAT GAAGCACACGTTGAGAGAGGCCAGCTCAATTCGAAACCCGGCTCCGAACAAAGCACCCAGATGGACGAACTTGAA CGCGAGGAGTTGGAGGCTAGGAAAGCAGCTCGTGAAAAGGAGCGCGCAGAGAACATGGCCCAAATAGCTCCTTCC GTCGGATCAGCGCCGAAAAGGCATAATGCCCCCAAACAGAAAACTCAGCAAGTGACTAAAACAGACATGACCCCA GAGGAGATAGCCAGGACTCGGATCAAGTATGAGGAGGCCCTTCCATGGCACTTGGAGGATTTTGACAACAAAAAT ATATGGGTAGGAAATTATGAAGCCGCGTTGTCAGAGACCCACGCAGTCTTTGTGCTTGAGAATACAGGGAAGATG AGAATGATACCGGTTGAGAAGTGGTATCGCTTCAGTGCGAAGAATACATTCAAGGCTTTGACCATAGAAGAAGCC GAGAGACTTATGGCTAAGAAGATCAAAGATCCGCGGTGGTTTATGGAGAAACAACAAGAACAAGCTCAACGAAAG GAACTGGAACAATTTGCCAGGCAACAAAAAGTGTACGCTGGTAAACAGGGAACCCCAGGCGGTGTCGAAGGGTTA GAAGCGGATGAGATGGACTTCGAAGAGGATAGGTTTGCCGATGATGAGGAGCATGATGATCTTTTTAACGAGGAT GAGGAAGCCAAGGCCGCTGAAAAGCGAATCAAGCAAGACCAACTGAAAGCCAATGTGTTCGATCTGAAGAACGAA AAGGACTACGAAGAGGAGGAACTTAGAGAAAAAAGAGAGAAAGAAGCTCGCCGAGTGCTTGGAAAGAAAGTACGC AAGGCTCTTCAGAAGAGGGAAAAGAACTATGACTATAGTAGCGGTTCAGATGTGAACCCTTATTCAGATGAGGAG AGCTCGGACGAAAGTGAAGCTGAACGGCAGAAGGAGGAAGAGGGCAAAGTTGAGGAGGATAAGAGCAAGAAAGAA CCCTCAAAAGGCAACCTTACTCCATCAGGTCGCTTACGACACGCCGATCCGGCCAAAAAAGGCTCTGCCGCAGCA CCTAGGAAGCGGCTAGGGTCTCCGTCTGATGCAAGTGGTACAGATACGTCCCGCAAGAAGGGGAAGAGTAAACAT CCGTCTTCCCAACCCACACCACAGCCACCTTCTCGTCCTATGTCTCCAAGCGCTTCATCATTACCAGTCAGCAAA AAGCGTGTTCGGAATGTGTTAGCAGGCAGCGCAGGATCTGCTAGCGATGTTGACGGTGGGGCTGGATCGGGCGGC GAAATGAGTGAGAGTGGGAAAGTTAAGAAACTGAAGCTCAATCCTCCGTCAGTGGCCTCACAGAGTGTGACACCG CAGGGCTCAAGGGCCGGCAGTCCGGCTCCCTTGGGTAGCAAGAGCTTCTCCGGAAGTCGTGCTAGCAGTCCGGAG TCTCTGAGGGGTCCAACACGCATTTCAACTCCGGGTCCATCTGGTAGTGCCCAAGGCTTTCCTACACCTGCAGAA ATCCATGCCGCTATTCCGCAGTCTGGTATTGGGAGTAGCGATTTGCTTAGAATCTTCCGTCCTCGTATTGGGGAA TCCAAAGAGAATCACCGGCGGTTCATAGCAATTGTCAAAGATGTTGGAGTGTACGGGAAAGAAGATAGGCTCTTA AGACCTGGTTCACTGAAAGAGACATAA
Transcript	>Ani_SJS100_1|g10486.t1 ATGACCACACCTACTAATGATCAGACTCTCAAGACCCCGACGGGGTCGAACGGTCCTCCACCAGTGAGGATTCGC CGGCCAAAAGTGGCGGATCCCCTCGTGCGACCAAAGAGGAGACCGGCAATAAGACCCCCAGCTCCTACCTCGGCA GCAAACGGCGCATCAAGGATGCCTAACTCAAGACCAGTCACTTCAAGCCAGCTACCAGGGGCTCGCGTCGAGAAA AGCCTGAACCCGAAGAATGATTTTTCGGCAAACGGATTCAGCGGCCCGTTGTTGTCTGAGAATTACGTTGATTAC CCCATCGTGACTACAAGACGAGCATTGCGCGAAGGCTTGAAGCACCATATCGCCAGGTTCACCTCGAAAAAGTCC GTCGATCCTCGCGATGAAAGTCAGTTTACTCGCCCTGTTAGGCTCCAGCGCCGAGATCCACGAGCACGGCCGAAT GAAGCACACGTTGAGAGAGGCCAGCTCAATTCGAAACCCGGCTCCGAACAAAGCACCCAGATGGACGAACTTGAA CGCGAGGAGTTGGAGGCTAGGAAAGCAGCTCGTGAAAAGGAGCGCGCAGAGAACATGGCCCAAATAGCTCCTTCC GTCGGATCAGCGCCGAAAAGGCATAATGCCCCCAAACAGAAAACTCAGCAAGTGACTAAAACAGACATGACCCCA GAGGAGATAGCCAGGACTCGGATCAAGTATGAGGAGGCCCTTCCATGGCACTTGGAGGATTTTGACAACAAAAAT ATATGGGTAGGAAATTATGAAGCCGCGTTGTCAGAGACCCACGCAGTCTTTGTGCTTGAGAATACAGGGAAGATG AGAATGATACCGGTTGAGAAGTGGTATCGCTTCAGTGCGAAGAATACATTCAAGGCTTTGACCATAGAAGAAGCC GAGAGACTTATGGCTAAGAAGATCAAAGATCCGCGGTGGTTTATGGAGAAACAACAAGAACAAGCTCAACGAAAG GAACTGGAACAATTTGCCAGGCAACAAAAAGTGTACGCTGGTAAACAGGGAACCCCAGGCGGTGTCGAAGGGTTA GAAGCGGATGAGATGGACTTCGAAGAGGATAGGTTTGCCGATGATGAGGAGCATGATGATCTTTTTAACGAGGAT GAGGAAGCCAAGGCCGCTGAAAAGCGAATCAAGCAAGACCAACTGAAAGCCAATGTGTTCGATCTGAAGAACGAA AAGGACTACGAAGAGGAGGAACTTAGAGAAAAAAGAGAGAAAGAAGCTCGCCGAGTGCTTGGAAAGAAAGTACGC AAGGCTCTTCAGAAGAGGGAAAAGAACTATGACTATAGTAGCGGTTCAGATGTGAACCCTTATTCAGATGAGGAG AGCTCGGACGAAAGTGAAGCTGAACGGCAGAAGGAGGAAGAGGGCAAAGTTGAGGAGGATAAGAGCAAGAAAGAA CCCTCAAAAGGCAACCTTACTCCATCAGGTCGCTTACGACACGCCGATCCGGCCAAAAAAGGCTCTGCCGCAGCA CCTAGGAAGCGGCTAGGGTCTCCGTCTGATGCAAGTGGTACAGATACGTCCCGCAAGAAGGGGAAGAGTAAACAT CCGTCTTCCCAACCCACACCACAGCCACCTTCTCGTCCTATGTCTCCAAGCGCTTCATCATTACCAGTCAGCAAA AAGCGTGTTCGGAATGTGTTAGCAGGCAGCGCAGGATCTGCTAGCGATGTTGACGGTGGGGCTGGATCGGGCGGC GAAATGAGTGAGAGTGGGAAAGTTAAGAAACTGAAGCTCAATCCTCCGTCAGTGGCCTCACAGAGTGTGACACCG CAGGGCTCAAGGGCCGGCAGTCCGGCTCCCTTGGGTAGCAAGAGCTTCTCCGGAAGTCGTGCTAGCAGTCCGGAG TCTCTGAGGGGTCCAACACGCATTTCAACTCCGGGTCCATCTGGTAGTGCCCAAGGCTTTCCTACACCTGCAGAA ATCCATGCCGCTATTCCGCAGTCTGGTATTGGGAGTAGCGATTTGCTTAGAATCTTCCGTCCTCGTATTGGGGAA TCCAAAGAGAATCACCGGCGGTTCATAGCAATTGTCAAAGATGTTGGAGTGTACGGGAAAGAAGATAGGCTCTTA AGACCTGGTTCACTGAAAGAGACATAA
Gene	>Ani_SJS100_1|g10486.t1 ATGACCACACCTACTAATGATCAGACTCTCAAGACCCCGACGGGGTCGAACGGTCCTCCACCAGTGAGGATTCGC CGGCCAAAAGTGGCGGATCCCCTCGTGCGACCAAAGAGGAGACCGGCAATAAGACCCCCAGCTCCTACCTCGGCA GCAAACGGCGCATCAAGGATGCCTAACTCAAGACCAGTCACTTCAAGCCAGCTACCAGGGGCTCGCGTCGAGAAA AGCCTGAACCCGAAGAATGATTTTTCGGCAAACGGATTCAGCGGCCCGTTGTTGTCTGAGAATTACGTTGATTAC CCCATCGTGACTACAAGACGAGCATTGCGCGAAGGCTTGAAGCACCATATCGCCAGGTTCACCTCGAAAAAGTCC GTCGATCCTCGCGATGAAAGTCAGTTTACTCGCCCTGTTAGGCTCCAGCGCCGAGATCCACGAGCACGGCCGAAT GAAGCACACGTTGAGAGAGGCCAGCTCAATTCGAAACCCGGCTCCGAACAAAGCACCCAGATGGACGAACTTGAA CGCGAGGAGTTGGAGGCTAGGAAAGCAGCTCGTGAAAAGGAGCGCGCAGAGAACATGGCCCAAATAGCTCCTTCC GTCGGATCAGCGCCGAAAAGGCATAATGCCCCCAAACAGAAAACTCAGCAAGTGACTAAAACAGACATGACCCCA GAGGAGATAGCCAGGACTCGGATCAAGTATGAGGAGGCCCTTCCATGGCACTTGGAGGATTTTGACAACAAAAAT ATATGGGTAGGAAATTATGAAGCCGCGTTGTCAGAGACCCACGCAGTCTTTGTGCTTGAGAATACAGGGAAGATG AGAATGATACCGGTTGAGAAGTGGTATCGCTTCAGTGCGAAGAATACATTCAAGGCTTTGACCATAGAAGAAGCC GAGAGACTTATGGCTAAGAAGATCAAAGATCCGCGGTGGTTTATGGAGAAACAACAAGAACAAGCTCAACGAAAG GAACTGGAACAATTTGCCAGGCAACAAAAAGTGTACGCTGGTAAACAGGGAACCCCAGGCGGTGTCGAAGGGTTA GAAGCGGATGAGATGGACTTCGAAGAGGATAGGTTTGCCGATGATGAGGAGCATGATGATCTTTTTAACGAGGAT GAGGAAGCCAAGGCCGCTGAAAAGCGAATCAAGCAAGACCAACTGAAAGCCAATGTGTTCGATCTGAAGAACGAA AAGGACTACGAAGAGGAGGAACTTAGAGAAAAAAGAGAGAAAGAAGCTCGCCGAGTGCTTGGAAAGAAAGTACGC AAGGCTCTTCAGAAGAGGGAAAAGAACTATGACTATAGTAGCGGTTCAGATGTGAACCCTTATTCAGATGAGGAG GTAATTTCTTCCTCCTTTCCCCGTATCCTATGTGCATTTGTACGATATTTGGGACGATCTGACATTTTTGACAGA GCTCGGACGAAAGTGAAGCTGAACGGCAGAAGGAGGAAGAGGGCAAAGTTGAGGAGGATAAGAGCAAGAAAGAAC CCTCAAAAGGCAACCTTACTCCATCAGGTCGCTTACGACACGCCGATCCGGCCAAAAAAGGCTCTGCCGCAGCAC CTAGGAAGCGGCTAGGGTCTCCGTCTGATGCAAGTGGTACAGATACGTCCCGCAAGAAGGGGAAGAGTAAACATC CGTCTTCCCAACCCACACCACAGCCACCTTCTCGTCCTATGTCTCCAAGCGCTTCATCATTACCAGTACGTTTTA CCTTCTGTTAAAACTGCGTTTGTTTCGGTTACTGATTCGGTCTAGGTCAGCAAAAAGCGTGTTCGGAATGTGTTA GCAGGCAGCGCAGGATCTGCTAGCGATGTTGACGGTGGGGCTGGATCGGGCGGCGAAATGAGTGAGAGTGGGAAA GTTAAGAAACTGAAGCTCAATCCTCCGTCAGTGGCCTCACAGAGTGTGACACCGCAGGGCTCAAGGGCCGGCAGT CCGGCTCCCTTGGGTAGCAAGAGCTTCTCCGGAAGTCGTGCTAGCAGTCCGGAGTCTCTGAGGGGTAAGTTGCTT GATTCTATCATCCTGCGCACTACGAACCGATTTACTGAGTAGCTGAACACCTGCAGGTCCAACACGCATTTCAAC TCCGGGTCCATCTGGTAGTGCCCAAGGCTTTCCTACACCTGCAGAAATCCATGCCGCTATTCCGCAGTCTGGTAT TGGGAGTAGCGATTTGCTTAGAATCTTCCGTCCTCGTATTGGGGAATCCAAAGAGAATCACCGGCGGTTCATAGC AATTGTCAAAGATGTTGGAGTGTACGGGAAAGAAGATAGGCTCTTAAGACCTGGTTCACTGAAAGAGACATAA