© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ani_SJS100_1|g1046.t1 |
| Gene name | |
| Location | scaffold_003:689308..690321 |
| Strand | - |
| Gene length (bp) | 1013 |
| Transcript length (bp) | 888 |
| Coding sequence length (bp) | 888 |
| Protein length (aa) | 296 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00106 | adh_short | short chain dehydrogenase | 5.3E-41 | 5 | 212 |
| PF13561 | adh_short_C2 | Enoyl-(Acyl carrier protein) reductase | 1.1E-31 | 11 | 225 |
| PF08659 | KR | KR domain | 4.6E-07 | 6 | 173 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 150 | 172 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g1046.t1 MTQPKTILITGAAGGIGLATSRHFNTLHPTSTIILTDLPTHQEATESLIQSTFPHPEKAVFLPANITDWGRMTHL FRTIAQKYGGVDVVVANAGMMESTPVLDLEDIDEETGELRESLEARRVVDVNLMGTLNTLRLAMYHMKEKEKKNG SIVLVASTSGYFGGTGVTAYVASKHGVVGLLRASQVTAQKYGIRVNAVAPFMTPTRMTAGLSQSWQDAGLEANTP ERVAEVIEQVGMDTARRGSCMLVAGRFLREMESTRMALLPSWLGQDVADFMAKAMKFIADIGGYVLPARL* |
| Coding | >Ani_SJS100_1|g1046.t1 ATGACCCAACCCAAAACAATCCTCATAACCGGCGCCGCCGGAGGCATTGGCCTCGCCACATCCCGGCATTTCAAC ACCCTCCACCCCACCAGTACCATCATCCTCACTGATCTGCCCACTCACCAAGAGGCCACTGAGTCCTTGATTCAG AGTACATTCCCGCACCCGGAAAAGGCAGTCTTTCTCCCCGCTAATATTACGGACTGGGGGCGAATGACACATCTA TTCAGGACGATTGCACAGAAATACGGCGGGGTGGATGTGGTGGTTGCAAATGCGGGAATGATGGAGTCTACGCCT GTTCTAGATTTGGAGGATATTGATGAGGAGACAGGGGAGTTGAGGGAGAGTTTGGAGGCAAGGAGGGTGGTGGAT GTTAATCTGATGGGGACTTTGAATACTCTGCGATTGGCGATGTATCACATGAAAGAGAAGGAGAAGAAGAACGGT TCAATTGTGCTGGTGGCTTCTACGTCGGGTTATTTTGGAGGCACGGGTGTCACAGCTTATGTGGCTTCCAAGCAT GGTGTAGTGGGATTGCTTCGGGCGTCGCAAGTGACGGCGCAGAAGTATGGCATCCGTGTTAATGCCGTTGCACCA TTCATGACCCCAACTAGAATGACGGCTGGTTTGTCTCAAAGCTGGCAGGATGCTGGGCTCGAGGCGAACACTCCT GAACGGGTGGCGGAGGTTATTGAGCAGGTCGGGATGGATACGGCCCGGAGGGGCTCTTGTATGCTGGTTGCTGGA AGATTTCTCAGGGAGATGGAGTCGACGAGGATGGCATTGCTCCCGTCATGGCTAGGTCAAGATGTTGCGGATTTC ATGGCGAAAGCAATGAAGTTCATTGCAGACATCGGAGGCTATGTGCTTCCTGCTCGACTATAG |
| Transcript | >Ani_SJS100_1|g1046.t1 ATGACCCAACCCAAAACAATCCTCATAACCGGCGCCGCCGGAGGCATTGGCCTCGCCACATCCCGGCATTTCAAC ACCCTCCACCCCACCAGTACCATCATCCTCACTGATCTGCCCACTCACCAAGAGGCCACTGAGTCCTTGATTCAG AGTACATTCCCGCACCCGGAAAAGGCAGTCTTTCTCCCCGCTAATATTACGGACTGGGGGCGAATGACACATCTA TTCAGGACGATTGCACAGAAATACGGCGGGGTGGATGTGGTGGTTGCAAATGCGGGAATGATGGAGTCTACGCCT GTTCTAGATTTGGAGGATATTGATGAGGAGACAGGGGAGTTGAGGGAGAGTTTGGAGGCAAGGAGGGTGGTGGAT GTTAATCTGATGGGGACTTTGAATACTCTGCGATTGGCGATGTATCACATGAAAGAGAAGGAGAAGAAGAACGGT TCAATTGTGCTGGTGGCTTCTACGTCGGGTTATTTTGGAGGCACGGGTGTCACAGCTTATGTGGCTTCCAAGCAT GGTGTAGTGGGATTGCTTCGGGCGTCGCAAGTGACGGCGCAGAAGTATGGCATCCGTGTTAATGCCGTTGCACCA TTCATGACCCCAACTAGAATGACGGCTGGTTTGTCTCAAAGCTGGCAGGATGCTGGGCTCGAGGCGAACACTCCT GAACGGGTGGCGGAGGTTATTGAGCAGGTCGGGATGGATACGGCCCGGAGGGGCTCTTGTATGCTGGTTGCTGGA AGATTTCTCAGGGAGATGGAGTCGACGAGGATGGCATTGCTCCCGTCATGGCTAGGTCAAGATGTTGCGGATTTC ATGGCGAAAGCAATGAAGTTCATTGCAGACATCGGAGGCTATGTGCTTCCTGCTCGACTATAG |
| Gene | >Ani_SJS100_1|g1046.t1 ATGACCCAACCCAAAACAATCCTCATAACCGGCGCCGCCGGAGGCATTGGCCTCGCCACATCCCGGCATTTCAAC ACCCTCCACCCCACCAGTACCATCATCCTCACTGATCTGCCCACTCACCAAGAGGCCACTGAGTCCTTGATTCAG AGTACATTCCCGCACCCGGAAAAGGCAGTCTTTCTCCCCGCTAATATTACGGACTGGGGGCGAATGACACATCTA TTCAGGACGATTGCACAGAAATACGGCGGGGTGGATGTGGTGGTTGCAAATGCGGGAATGATGGAGTCTACGCCT GTTCTAGATTTGGAGGATATTGATGAGGAGACAGGGGAGTTGAGGGAGAGTTTGGAGGCAAGGAGGGTGGTGGAT GTTAATCTGATGGGGACTTTGAATAGTATGAATGCCTTTCTTTTCTTCTTTTGTGCTCTGGGGTGTGAGGTGCTA ATGGTGTGAAGCTCTGCGATTGGCGATGTATCACATGAAAGAGAAGGAGAAGAAGAACGGTTCAATTGTGCTGGT GGCTTCTACGTCGGGTTATTTTGGAGGCACGGGTGTCACAGCTTATGTGGCTTCCAAGCATGGTGTAGTGGGATT GCTTCGGGCGTCGCAAGTGACGGCGCAGAAGTATGGCATCCGTGTTAATGCCGTTGCACCATTCATGACCCCAAC TAGAATGACGGCTGGTTTGTCTCAAAGCTGGCAGGATGCTGGGCTCGAGGCGAACACTCCTGAACGGGTGGCGGA GGTTATTGAGCAGGTCGGGATGGATACGGCCCGGAGGGGCTCTTGTATGCTGGTGAGTGCACCGAATAGCAGGAG TGATTGTGATGTACAGTCGCACTAAGGGGTTTATGTGCTAGGTTGCTGGAAGATTTCTCAGGGAGATGGAGTCGA CGAGGATGGCATTGCTCCCGTCATGGCTAGGTCAAGATGTTGCGGATTTCATGGCGAAAGCAATGAAGTTCATTG CAGACATCGGAGGCTATGTGCTTCCTGCTCGACTATAG |