Fungal Genomics

at Utrecht University

General Properties

Protein IDAni_SJS100_1|g10429.t1
Gene name
Locationscaffold_116:56923..58724
Strand-
Gene length (bp)1801
Transcript length (bp)1749
Coding sequence length (bp)1749
Protein length (aa) 583

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF03467 Smg4_UPF3 Smg-4/UPF3 family 2.4E-45 39 206
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.6E-06 423 468

GO

GO Term Description Terminal node
GO:0003723 RNA binding Yes
GO:0003676 nucleic acid binding No
GO:0005488 binding No
GO:1901363 heterocyclic compound binding No
GO:0097159 organic cyclic compound binding No
GO:0003674 molecular_function No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 55 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ani_SJS100_1|g10429.t1
MTQIPAGKSTGGVLQIPAAATQKNASAPPKKAPKPAAPRLKLLVRRLPPGLTQAEFETALGSEWKVGGGKVDWFQ
YKPGKVSKDPAKPSRPSRAYIHVMSSDHTIPLSNKVRQTSFLDARNTSTDPVLLGPPSLEFAPYAKIAGNRSRKD
ARQGTIDQDPEFIAFLESLTQPLAKPAPVESGADGEDKKETVTVTPLVQYIREKKANKAKESSKSKHKSDKDSKG
EKIQAKKLLQRPDRDTKVSAATEKPEKKSKSDKATKEAVKAANKQAANVAAKQAAKSSPAQNSPKDTPQTSTERK
RERGSVAAAAKILQRDLGLAPSGRRRGGKAAAVDGDTPKSDQSGTATPDTSKKETPSRPSKGANSARDKSKGSNT
QPPSEPSEASTPVSTTPKPGKSGKGKQASAGPAATATQAFLKHANPSQGVTEPLLEAAFAPFGKVLKVEIDKKKG
FGYIDFAEPDGLQKAIAASPVSVAQSQVVVLERKANPGGEKGRGKGRSEAQASSGGGGGGGGGGGGGNNSRGNKS
NESGSGGNSSRGPRGGRGSKGKGAPKGGGGGGGGNSGGNAGAANGNHPESKGGSDSK*
Coding >Ani_SJS100_1|g10429.t1
ATGACGCAGATCCCTGCGGGCAAGTCTACAGGAGGCGTTCTCCAGATCCCCGCCGCTGCGACTCAGAAGAATGCC
TCTGCGCCGCCAAAGAAGGCTCCAAAGCCAGCCGCGCCTCGATTGAAGCTCCTCGTCAGACGTCTGCCACCCGGA
CTAACACAAGCGGAATTCGAGACAGCGTTGGGCTCGGAATGGAAGGTTGGCGGTGGGAAGGTCGACTGGTTCCAA
TACAAGCCAGGAAAGGTCTCTAAAGATCCAGCCAAACCTTCTCGGCCTTCGCGTGCGTATATCCATGTCATGTCC
AGCGATCACACCATCCCGCTCTCGAACAAAGTCCGCCAAACGTCTTTCTTGGACGCCCGTAATACCTCAACCGAT
CCTGTCCTTTTGGGACCTCCATCTTTGGAATTCGCACCTTATGCCAAGATTGCCGGAAACCGTTCGCGCAAAGAC
GCCCGTCAAGGAACTATCGACCAAGACCCCGAGTTCATCGCTTTTCTCGAGAGCCTCACGCAACCACTTGCCAAA
CCGGCTCCTGTCGAGTCTGGCGCTGATGGGGAGGATAAGAAGGAGACGGTGACTGTTACGCCTTTGGTGCAGTAC
ATCAGAGAGAAGAAGGCCAACAAGGCGAAGGAATCCAGCAAATCTAAACACAAGTCGGACAAGGACTCCAAGGGG
GAGAAGATCCAGGCGAAGAAGTTGCTACAACGTCCTGACAGGGATACAAAGGTCTCTGCTGCTACGGAGAAACCC
GAGAAGAAATCCAAGTCCGACAAAGCTACCAAGGAAGCTGTGAAGGCCGCAAACAAGCAGGCTGCTAATGTTGCT
GCCAAGCAAGCCGCGAAATCATCTCCAGCGCAAAACTCACCCAAGGATACGCCACAGACATCTACAGAGCGGAAA
CGCGAACGTGGAAGTGTCGCGGCTGCTGCCAAGATCCTCCAGCGCGACCTGGGGCTTGCTCCGTCCGGTCGCCGC
AGGGGTGGCAAAGCAGCGGCCGTTGATGGAGATACGCCCAAGTCTGATCAGAGCGGAACTGCAACCCCAGATACG
AGCAAGAAGGAGACGCCGTCCAGACCTTCCAAGGGGGCGAACTCGGCTCGGGACAAGTCCAAGGGCAGCAACACA
CAACCACCCAGTGAGCCATCCGAAGCAAGCACTCCAGTCAGTACTACACCTAAGCCGGGAAAGTCTGGGAAGGGG
AAGCAAGCATCGGCAGGACCGGCAGCGACCGCTACCCAAGCATTCCTCAAGCACGCCAACCCATCTCAGGGCGTT
ACCGAGCCACTTCTGGAAGCCGCATTCGCGCCATTCGGAAAGGTTCTCAAAGTGGAGATTGATAAGAAGAAAGGA
TTCGGCTACATTGATTTCGCAGAACCCGACGGACTTCAAAAGGCCATTGCTGCTAGTCCTGTCTCGGTCGCGCAG
AGTCAAGTTGTCGTGCTAGAGAGAAAGGCCAACCCCGGTGGAGAGAAGGGCCGCGGCAAAGGCCGCAGTGAAGCC
CAAGCATCCTCGGGAGGCGGCGGCGGCGGTGGTGGTGGTGGCGGTGGTGGTAACAATAGCCGGGGGAATAAGTCC
AATGAAAGCGGCTCGGGGGGCAACTCATCTCGTGGACCACGCGGTGGACGAGGGTCCAAGGGCAAGGGAGCCCCC
AAGGGAGGAGGAGGCGGAGGAGGAGGAAACAGTGGTGGAAATGCCGGGGCTGCGAATGGGAATCACCCTGAGAGC
AAGGGGGGTTCAGATAGTAAATGA
Transcript >Ani_SJS100_1|g10429.t1
ATGACGCAGATCCCTGCGGGCAAGTCTACAGGAGGCGTTCTCCAGATCCCCGCCGCTGCGACTCAGAAGAATGCC
TCTGCGCCGCCAAAGAAGGCTCCAAAGCCAGCCGCGCCTCGATTGAAGCTCCTCGTCAGACGTCTGCCACCCGGA
CTAACACAAGCGGAATTCGAGACAGCGTTGGGCTCGGAATGGAAGGTTGGCGGTGGGAAGGTCGACTGGTTCCAA
TACAAGCCAGGAAAGGTCTCTAAAGATCCAGCCAAACCTTCTCGGCCTTCGCGTGCGTATATCCATGTCATGTCC
AGCGATCACACCATCCCGCTCTCGAACAAAGTCCGCCAAACGTCTTTCTTGGACGCCCGTAATACCTCAACCGAT
CCTGTCCTTTTGGGACCTCCATCTTTGGAATTCGCACCTTATGCCAAGATTGCCGGAAACCGTTCGCGCAAAGAC
GCCCGTCAAGGAACTATCGACCAAGACCCCGAGTTCATCGCTTTTCTCGAGAGCCTCACGCAACCACTTGCCAAA
CCGGCTCCTGTCGAGTCTGGCGCTGATGGGGAGGATAAGAAGGAGACGGTGACTGTTACGCCTTTGGTGCAGTAC
ATCAGAGAGAAGAAGGCCAACAAGGCGAAGGAATCCAGCAAATCTAAACACAAGTCGGACAAGGACTCCAAGGGG
GAGAAGATCCAGGCGAAGAAGTTGCTACAACGTCCTGACAGGGATACAAAGGTCTCTGCTGCTACGGAGAAACCC
GAGAAGAAATCCAAGTCCGACAAAGCTACCAAGGAAGCTGTGAAGGCCGCAAACAAGCAGGCTGCTAATGTTGCT
GCCAAGCAAGCCGCGAAATCATCTCCAGCGCAAAACTCACCCAAGGATACGCCACAGACATCTACAGAGCGGAAA
CGCGAACGTGGAAGTGTCGCGGCTGCTGCCAAGATCCTCCAGCGCGACCTGGGGCTTGCTCCGTCCGGTCGCCGC
AGGGGTGGCAAAGCAGCGGCCGTTGATGGAGATACGCCCAAGTCTGATCAGAGCGGAACTGCAACCCCAGATACG
AGCAAGAAGGAGACGCCGTCCAGACCTTCCAAGGGGGCGAACTCGGCTCGGGACAAGTCCAAGGGCAGCAACACA
CAACCACCCAGTGAGCCATCCGAAGCAAGCACTCCAGTCAGTACTACACCTAAGCCGGGAAAGTCTGGGAAGGGG
AAGCAAGCATCGGCAGGACCGGCAGCGACCGCTACCCAAGCATTCCTCAAGCACGCCAACCCATCTCAGGGCGTT
ACCGAGCCACTTCTGGAAGCCGCATTCGCGCCATTCGGAAAGGTTCTCAAAGTGGAGATTGATAAGAAGAAAGGA
TTCGGCTACATTGATTTCGCAGAACCCGACGGACTTCAAAAGGCCATTGCTGCTAGTCCTGTCTCGGTCGCGCAG
AGTCAAGTTGTCGTGCTAGAGAGAAAGGCCAACCCCGGTGGAGAGAAGGGCCGCGGCAAAGGCCGCAGTGAAGCC
CAAGCATCCTCGGGAGGCGGCGGCGGCGGTGGTGGTGGTGGCGGTGGTGGTAACAATAGCCGGGGGAATAAGTCC
AATGAAAGCGGCTCGGGGGGCAACTCATCTCGTGGACCACGCGGTGGACGAGGGTCCAAGGGCAAGGGAGCCCCC
AAGGGAGGAGGAGGCGGAGGAGGAGGAAACAGTGGTGGAAATGCCGGGGCTGCGAATGGGAATCACCCTGAGAGC
AAGGGGGGTTCAGATAGTAAATGA
Gene >Ani_SJS100_1|g10429.t1
ATGACGCAGATCCCTGCGGGCAAGTCTACAGGAGGCGTTCTCCAGATCCCCGCCGCTGCGACTCAGAAGAATGCC
TCTGCGCCGCCAAAGAAGGCTCCAAAGCCAGCCGCGCCTCGATTGAAGCTCCTCGTCAGACGTCTGCCACCCGGA
CTAACACAAGCGGAATTCGAGACAGCGTTGGGCTCGGAATGGAAGGTTGGCGGTGGGAAGGTCGACTGGTTCCAA
TACAAGCCAGGAAAGGTCTCTAAAGAGTAAGCTAGCATTGTAACCTGTGAAGACTTTCGCTAACAGTATGCTGTA
TAGTCCAGCCAAACCTTCTCGGCCTTCGCGTGCGTATATCCATGTCATGTCCAGCGATCACACCATCCCGCTCTC
GAACAAAGTCCGCCAAACGTCTTTCTTGGACGCCCGTAATACCTCAACCGATCCTGTCCTTTTGGGACCTCCATC
TTTGGAATTCGCACCTTATGCCAAGATTGCCGGAAACCGTTCGCGCAAAGACGCCCGTCAAGGAACTATCGACCA
AGACCCCGAGTTCATCGCTTTTCTCGAGAGCCTCACGCAACCACTTGCCAAACCGGCTCCTGTCGAGTCTGGCGC
TGATGGGGAGGATAAGAAGGAGACGGTGACTGTTACGCCTTTGGTGCAGTACATCAGAGAGAAGAAGGCCAACAA
GGCGAAGGAATCCAGCAAATCTAAACACAAGTCGGACAAGGACTCCAAGGGGGAGAAGATCCAGGCGAAGAAGTT
GCTACAACGTCCTGACAGGGATACAAAGGTCTCTGCTGCTACGGAGAAACCCGAGAAGAAATCCAAGTCCGACAA
AGCTACCAAGGAAGCTGTGAAGGCCGCAAACAAGCAGGCTGCTAATGTTGCTGCCAAGCAAGCCGCGAAATCATC
TCCAGCGCAAAACTCACCCAAGGATACGCCACAGACATCTACAGAGCGGAAACGCGAACGTGGAAGTGTCGCGGC
TGCTGCCAAGATCCTCCAGCGCGACCTGGGGCTTGCTCCGTCCGGTCGCCGCAGGGGTGGCAAAGCAGCGGCCGT
TGATGGAGATACGCCCAAGTCTGATCAGAGCGGAACTGCAACCCCAGATACGAGCAAGAAGGAGACGCCGTCCAG
ACCTTCCAAGGGGGCGAACTCGGCTCGGGACAAGTCCAAGGGCAGCAACACACAACCACCCAGTGAGCCATCCGA
AGCAAGCACTCCAGTCAGTACTACACCTAAGCCGGGAAAGTCTGGGAAGGGGAAGCAAGCATCGGCAGGACCGGC
AGCGACCGCTACCCAAGCATTCCTCAAGCACGCCAACCCATCTCAGGGCGTTACCGAGCCACTTCTGGAAGCCGC
ATTCGCGCCATTCGGAAAGGTTCTCAAAGTGGAGATTGATAAGAAGAAAGGATTCGGCTACATTGATTTCGCAGA
ACCCGACGGACTTCAAAAGGCCATTGCTGCTAGTCCTGTCTCGGTCGCGCAGAGTCAAGTTGTCGTGCTAGAGAG
AAAGGCCAACCCCGGTGGAGAGAAGGGCCGCGGCAAAGGCCGCAGTGAAGCCCAAGCATCCTCGGGAGGCGGCGG
CGGCGGTGGTGGTGGTGGCGGTGGTGGTAACAATAGCCGGGGGAATAAGTCCAATGAAAGCGGCTCGGGGGGCAA
CTCATCTCGTGGACCACGCGGTGGACGAGGGTCCAAGGGCAAGGGAGCCCCCAAGGGAGGAGGAGGCGGAGGAGG
AGGAAACAGTGGTGGAAATGCCGGGGCTGCGAATGGGAATCACCCTGAGAGCAAGGGGGGTTCAGATAGTAAATG
A

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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