© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ani_SJS100_1|g10423.t1 |
| Gene name | |
| Location | scaffold_116:41467..42089 |
| Strand | + |
| Gene length (bp) | 622 |
| Transcript length (bp) | 516 |
| Coding sequence length (bp) | 516 |
| Protein length (aa) | 172 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00646 | F-box | F-box domain | 3.2E-04 | 19 | 51 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005515 | protein binding | Yes |
| GO:0005488 | binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 143 | 165 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g10423.t1 MDSSSLQEAPAIPSLNLMDLPTELHLHISTYLPYPDALALKHTSRHFYSLVYTGVHLKVDWFVERFSQKLDCPME KCSFRTDEAFCNKTIRVIMERRRRHLECRAQPGGCLVIEGRTCQKDLLPLWMKKRGRWEMVRSFGNEALIHGLIF LCVFLLWNMSARLFNRAVVAV* |
| Coding | >Ani_SJS100_1|g10423.t1 ATGGATTCCTCATCGCTCCAAGAAGCCCCAGCTATCCCTTCACTCAATCTGATGGACCTCCCCACAGAACTCCAT CTACATATCTCCACATATCTCCCTTACCCAGATGCACTAGCATTGAAACACACCTCTCGTCATTTCTACTCTCTC GTCTACACCGGGGTCCACCTGAAGGTCGACTGGTTTGTGGAACGCTTTTCGCAGAAACTCGATTGTCCAATGGAG AAATGCTCGTTCCGGACGGACGAGGCGTTCTGTAACAAGACAATTCGAGTGATCATGGAGCGCAGAAGACGGCAT CTGGAGTGTCGGGCACAACCGGGTGGGTGCCTGGTCATTGAGGGGAGGACTTGTCAGAAGGATCTGCTTCCATTG TGGATGAAGAAACGGGGTCGTTGGGAGATGGTCAGGTCTTTTGGGAATGAAGCTTTGATCCACGGGCTTATCTTT CTCTGTGTGTTTTTGCTTTGGAATATGAGTGCAAGGCTTTTTAACCGCGCGGTGGTGGCAGTATAA |
| Transcript | >Ani_SJS100_1|g10423.t1 ATGGATTCCTCATCGCTCCAAGAAGCCCCAGCTATCCCTTCACTCAATCTGATGGACCTCCCCACAGAACTCCAT CTACATATCTCCACATATCTCCCTTACCCAGATGCACTAGCATTGAAACACACCTCTCGTCATTTCTACTCTCTC GTCTACACCGGGGTCCACCTGAAGGTCGACTGGTTTGTGGAACGCTTTTCGCAGAAACTCGATTGTCCAATGGAG AAATGCTCGTTCCGGACGGACGAGGCGTTCTGTAACAAGACAATTCGAGTGATCATGGAGCGCAGAAGACGGCAT CTGGAGTGTCGGGCACAACCGGGTGGGTGCCTGGTCATTGAGGGGAGGACTTGTCAGAAGGATCTGCTTCCATTG TGGATGAAGAAACGGGGTCGTTGGGAGATGGTCAGGTCTTTTGGGAATGAAGCTTTGATCCACGGGCTTATCTTT CTCTGTGTGTTTTTGCTTTGGAATATGAGTGCAAGGCTTTTTAACCGCGCGGTGGTGGCAGTATAA |
| Gene | >Ani_SJS100_1|g10423.t1 ATGGATTCCTCATCGCTCCAAGAAGCCCCAGCTATCCCTTCACTCAATCTGATGGACCTCCCCACAGAACTCCAT CTACATATCTCCACATATCTCCCTTACCCAGATGCACTAGCATTGAAACACACCTCTCGTCATTTCTACTCTCTC GTCTACACCGGGGTCCACCTGAAGGTCGACTGGTTTGTGGAACGCTTTTCGCAGAAACTCGATTGTCCAATGGAG AAATGCTCGTTCCGGACGGACGAGGCGTTCTGTAACAAGACAATTCGAGTGATCATGGAGCGCAGAAGACGGCAT CTGGAGTGTCGGGCACAACCGGGTGGGTGCCTGGTCATTGAGGGGAGGACTTGTCAGAAGGATCTGCTTCCATTG TGGATGAAGAAACGGGGTCGTTGGGAGATGGTCAGGTCTTTTGGGAATGAAGGTTGGTTTGCATCTGAACGTATC GCTTGAGATTATGAGCTAACATGCTTGCAGCTTTGATCCACGGGCTTATCTTTCTCTGTGTGTTTTTGCTTTGGA ATATGAGTGCAAGGTGAGTTGCCTTATCGGTATAGAATTTAATCTCAATCATACTAACTCTGTCAGGCTTTTTAA CCGCGCGGTGGTGGCAGTATAA |