Protein ID | Ani_SJS100_1|g10254.t1 |
Gene name | |
Location | scaffold_110:65339..67430 |
Strand | + |
Gene length (bp) | 2091 |
Transcript length (bp) | 1983 |
Coding sequence length (bp) | 1983 |
Protein length (aa) | 661 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF00505 | HMG_box | HMG (high mobility group) box | 2.0E-22 | 112 | 180 |
PF09011 | HMG_box_2 | HMG-box domain | 4.8E-08 | 114 | 179 |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 68 | 0.45 |
Transcription Factor Class (based on PFAM domains) |
---|
HMG |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Ani_SJS100_1|g10254.t1 MNDDVAKVSMMDRHLDTAALSGHRRFTDTLPPVHLTSLNRSKVALNKVASNAASAIETPKPTNFLATKAIPLRER SSLSERSSSSSPIKSSNAPTPRESATQFCLCQPDPKIPRPRNAFILYRQHYQAAVVAQNPGLANPEISKIIGEQW RGLPQETKDEWKALAEEEKARHQQQYPEYRYQPRRYGRDGNLRSGASGISHNPPGSTVCSRCGGRVMNPPVSPET PYTPRASFFGGKSAPGEVFSARSNQCRAKDLDRAPNVIKLIPNGNGESRLPRQHFVESRSRSPDNKRRRLGPLGP YDIRERSPDSSYPASPYTPRSAVADSRGLYQPLQQPRPGRNFKEYTPPDPSLKLPPLQTATHVPGTITPTTPYSH DGPSIEATVMTIPFLNKIKVLAKISPPLTPAYHDGSSFRRGAVIAVDGQDPVLVKIMVEFLNNTLQKEGRYHTQI FGGPEIRSRESYSESEQMGDATVDYLNIISSWHRISDEIVSFVKPSRASSESKSVDEESTPGVSPRTIIPKTADL QINSPEQLSDNSSVSTVSTGLGSITMPVPVALVPRYQLTTADAFACSVPIGDSYAPLDHWQWMASLWRACVGPDI TVYIRECEKDELERLGGSPVEVRLHDARTIVVRRLASSPSELEEKSLKRVGFEIEDFLTQ* |
Coding | >Ani_SJS100_1|g10254.t1 ATGAATGACGATGTCGCTAAAGTGTCTATGATGGACCGTCATCTGGACACTGCTGCTTTAAGTGGTCATCGTCGA TTCACTGACACACTGCCTCCGGTACATCTGACCTCTCTGAATCGAAGCAAGGTAGCTCTCAACAAAGTCGCCTCC AACGCTGCCTCTGCTATTGAAACCCCGAAGCCCACGAACTTTCTAGCTACAAAGGCTATTCCTCTTCGTGAACGC TCATCTTTGTCAGAACGTTCGTCGTCATCTAGTCCAATCAAGTCATCCAATGCTCCCACCCCAAGGGAGTCGGCC ACACAGTTCTGCCTCTGTCAGCCGGATCCGAAGATCCCTAGGCCTCGAAATGCGTTCATCTTATACCGCCAACAT TACCAAGCTGCAGTGGTCGCGCAGAACCCAGGCCTTGCCAATCCTGAAATCTCCAAAATTATTGGGGAGCAATGG AGAGGGCTTCCACAGGAGACAAAGGATGAGTGGAAAGCACTGGCAGAGGAGGAGAAAGCTCGGCACCAACAACAA TACCCGGAGTATCGCTATCAGCCTCGTCGCTACGGTCGGGATGGGAATCTCCGGAGCGGAGCATCTGGCATCAGC CATAACCCTCCAGGCTCTACAGTCTGCAGCCGATGTGGAGGCCGTGTGATGAACCCTCCAGTATCACCGGAGACT CCTTATACACCCAGGGCCTCCTTTTTCGGTGGAAAATCGGCACCTGGGGAGGTCTTTTCAGCACGCAGTAACCAG TGTCGCGCCAAAGATCTGGACCGTGCTCCTAATGTCATCAAGCTTATCCCCAATGGTAATGGGGAATCACGCTTG CCTCGTCAGCATTTTGTGGAAAGCAGAAGCCGATCACCGGATAATAAGCGCAGGCGGTTGGGACCGCTTGGTCCT TACGATATCCGTGAAAGAAGCCCGGATTCTTCATATCCTGCATCTCCATACACTCCTCGCTCGGCAGTAGCAGAC TCACGAGGTCTGTACCAGCCGCTACAGCAGCCACGGCCCGGCCGAAATTTCAAGGAGTATACCCCGCCGGATCCC AGCTTGAAACTTCCACCGCTACAAACAGCTACTCATGTCCCCGGAACTATCACCCCAACGACTCCATATTCGCAT GATGGACCTAGCATCGAAGCCACCGTCATGACAATCCCGTTTCTCAACAAGATAAAGGTCTTGGCTAAGATCTCC CCGCCCTTGACGCCGGCATACCATGATGGATCGTCGTTCCGACGTGGGGCTGTGATAGCCGTGGATGGACAAGAT CCTGTTCTTGTTAAAATAATGGTCGAATTTTTGAACAATACATTACAGAAGGAGGGTAGGTATCATACCCAAATC TTCGGAGGACCTGAGATTCGGTCTCGTGAGAGCTACTCCGAATCCGAGCAAATGGGTGATGCAACTGTCGACTAC CTCAATATCATCTCCTCATGGCACCGCATCTCCGACGAAATAGTCAGCTTCGTGAAGCCTTCACGAGCATCATCG GAGTCAAAGTCAGTTGACGAAGAATCCACGCCAGGAGTGTCGCCACGGACTATTATACCCAAGACTGCTGATTTA CAGATCAACTCTCCCGAGCAATTGAGCGATAATAGCTCTGTTTCGACAGTCTCCACCGGATTGGGTTCCATTACG ATGCCCGTGCCTGTCGCACTTGTTCCCCGATACCAACTAACGACCGCGGATGCTTTTGCTTGCTCCGTCCCGATC GGGGATTCGTATGCACCACTTGACCACTGGCAGTGGATGGCATCTCTGTGGAGGGCGTGCGTAGGACCGGACATA ACCGTGTACATCCGAGAATGCGAGAAGGACGAACTAGAGCGTCTTGGAGGCAGCCCCGTGGAAGTTCGTCTTCAT GATGCACGAACCATTGTGGTTCGAAGACTGGCATCCTCACCAAGCGAACTGGAGGAAAAGTCACTTAAGAGAGTC GGCTTCGAGATTGAGGACTTTCTCACCCAATGA |
Transcript | >Ani_SJS100_1|g10254.t1 ATGAATGACGATGTCGCTAAAGTGTCTATGATGGACCGTCATCTGGACACTGCTGCTTTAAGTGGTCATCGTCGA TTCACTGACACACTGCCTCCGGTACATCTGACCTCTCTGAATCGAAGCAAGGTAGCTCTCAACAAAGTCGCCTCC AACGCTGCCTCTGCTATTGAAACCCCGAAGCCCACGAACTTTCTAGCTACAAAGGCTATTCCTCTTCGTGAACGC TCATCTTTGTCAGAACGTTCGTCGTCATCTAGTCCAATCAAGTCATCCAATGCTCCCACCCCAAGGGAGTCGGCC ACACAGTTCTGCCTCTGTCAGCCGGATCCGAAGATCCCTAGGCCTCGAAATGCGTTCATCTTATACCGCCAACAT TACCAAGCTGCAGTGGTCGCGCAGAACCCAGGCCTTGCCAATCCTGAAATCTCCAAAATTATTGGGGAGCAATGG AGAGGGCTTCCACAGGAGACAAAGGATGAGTGGAAAGCACTGGCAGAGGAGGAGAAAGCTCGGCACCAACAACAA TACCCGGAGTATCGCTATCAGCCTCGTCGCTACGGTCGGGATGGGAATCTCCGGAGCGGAGCATCTGGCATCAGC CATAACCCTCCAGGCTCTACAGTCTGCAGCCGATGTGGAGGCCGTGTGATGAACCCTCCAGTATCACCGGAGACT CCTTATACACCCAGGGCCTCCTTTTTCGGTGGAAAATCGGCACCTGGGGAGGTCTTTTCAGCACGCAGTAACCAG TGTCGCGCCAAAGATCTGGACCGTGCTCCTAATGTCATCAAGCTTATCCCCAATGGTAATGGGGAATCACGCTTG CCTCGTCAGCATTTTGTGGAAAGCAGAAGCCGATCACCGGATAATAAGCGCAGGCGGTTGGGACCGCTTGGTCCT TACGATATCCGTGAAAGAAGCCCGGATTCTTCATATCCTGCATCTCCATACACTCCTCGCTCGGCAGTAGCAGAC TCACGAGGTCTGTACCAGCCGCTACAGCAGCCACGGCCCGGCCGAAATTTCAAGGAGTATACCCCGCCGGATCCC AGCTTGAAACTTCCACCGCTACAAACAGCTACTCATGTCCCCGGAACTATCACCCCAACGACTCCATATTCGCAT GATGGACCTAGCATCGAAGCCACCGTCATGACAATCCCGTTTCTCAACAAGATAAAGGTCTTGGCTAAGATCTCC CCGCCCTTGACGCCGGCATACCATGATGGATCGTCGTTCCGACGTGGGGCTGTGATAGCCGTGGATGGACAAGAT CCTGTTCTTGTTAAAATAATGGTCGAATTTTTGAACAATACATTACAGAAGGAGGGTAGGTATCATACCCAAATC TTCGGAGGACCTGAGATTCGGTCTCGTGAGAGCTACTCCGAATCCGAGCAAATGGGTGATGCAACTGTCGACTAC CTCAATATCATCTCCTCATGGCACCGCATCTCCGACGAAATAGTCAGCTTCGTGAAGCCTTCACGAGCATCATCG GAGTCAAAGTCAGTTGACGAAGAATCCACGCCAGGAGTGTCGCCACGGACTATTATACCCAAGACTGCTGATTTA CAGATCAACTCTCCCGAGCAATTGAGCGATAATAGCTCTGTTTCGACAGTCTCCACCGGATTGGGTTCCATTACG ATGCCCGTGCCTGTCGCACTTGTTCCCCGATACCAACTAACGACCGCGGATGCTTTTGCTTGCTCCGTCCCGATC GGGGATTCGTATGCACCACTTGACCACTGGCAGTGGATGGCATCTCTGTGGAGGGCGTGCGTAGGACCGGACATA ACCGTGTACATCCGAGAATGCGAGAAGGACGAACTAGAGCGTCTTGGAGGCAGCCCCGTGGAAGTTCGTCTTCAT GATGCACGAACCATTGTGGTTCGAAGACTGGCATCCTCACCAAGCGAACTGGAGGAAAAGTCACTTAAGAGAGTC GGCTTCGAGATTGAGGACTTTCTCACCCAATGA |
Gene | >Ani_SJS100_1|g10254.t1 ATGAATGACGATGTCGCTAAAGTGTCTATGATGGACCGTCATCTGGACACTGCTGCTTTAAGTGGTCATCGTCGA TTCACTGACACACTGCCTCCGGTACATCTGACCTCTCTGAATCGAAGCAAGGTAGCTCTCAACAAAGTCGCCTCC AACGCTGCCTCTGCTATTGAAACCCCGAAGCCCACGAACTTTCTAGCTACAAAGGCTATTCCTCTTCGTGAACGC TCATCTTTGTCAGAACGTTCGTCGTCATCTAGTCCAATCAAGTCATCCAATGCTCCCACCCCAAGGGAGTCGGCC ACACAGTTCTGCCTCTGTCAGCCGGATCCGAAGATCCCTAGGCCTCGAAATGGTATGCAAGCTTGAAATCTGCTC GATTTGTTTCTTGAGCTGACAAACAGGTTAAAGCGTTCATCTTATACCGCCAACATTACCAAGCTGCAGTGGTCG CGCAGAACCCAGGCCTTGCCAATCCTGAAATCTCCAAAATTATTGGGGAGCAATGGAGAGGGCTTCCACAGGAGA CAAAGGATGAGTGGAAAGCACTGGCAGAGGTAAGTGCATGTACTGTATCTATCTTTGAGTGGACCACCTAACTCT TGACAGGAGGAGAAAGCTCGGCACCAACAACAATACCCGGAGTATCGCTATCAGCCTCGTCGCTACGGTCGGGAT GGGAATCTCCGGAGCGGAGCATCTGGCATCAGCCATAACCCTCCAGGCTCTACAGTCTGCAGCCGATGTGGAGGC CGTGTGATGAACCCTCCAGTATCACCGGAGACTCCTTATACACCCAGGGCCTCCTTTTTCGGTGGAAAATCGGCA CCTGGGGAGGTCTTTTCAGCACGCAGTAACCAGTGTCGCGCCAAAGATCTGGACCGTGCTCCTAATGTCATCAAG CTTATCCCCAATGGTAATGGGGAATCACGCTTGCCTCGTCAGCATTTTGTGGAAAGCAGAAGCCGATCACCGGAT AATAAGCGCAGGCGGTTGGGACCGCTTGGTCCTTACGATATCCGTGAAAGAAGCCCGGATTCTTCATATCCTGCA TCTCCATACACTCCTCGCTCGGCAGTAGCAGACTCACGAGGTCTGTACCAGCCGCTACAGCAGCCACGGCCCGGC CGAAATTTCAAGGAGTATACCCCGCCGGATCCCAGCTTGAAACTTCCACCGCTACAAACAGCTACTCATGTCCCC GGAACTATCACCCCAACGACTCCATATTCGCATGATGGACCTAGCATCGAAGCCACCGTCATGACAATCCCGTTT CTCAACAAGATAAAGGTCTTGGCTAAGATCTCCCCGCCCTTGACGCCGGCATACCATGATGGATCGTCGTTCCGA CGTGGGGCTGTGATAGCCGTGGATGGACAAGATCCTGTTCTTGTTAAAATAATGGTCGAATTTTTGAACAATACA TTACAGAAGGAGGGTAGGTATCATACCCAAATCTTCGGAGGACCTGAGATTCGGTCTCGTGAGAGCTACTCCGAA TCCGAGCAAATGGGTGATGCAACTGTCGACTACCTCAATATCATCTCCTCATGGCACCGCATCTCCGACGAAATA GTCAGCTTCGTGAAGCCTTCACGAGCATCATCGGAGTCAAAGTCAGTTGACGAAGAATCCACGCCAGGAGTGTCG CCACGGACTATTATACCCAAGACTGCTGATTTACAGATCAACTCTCCCGAGCAATTGAGCGATAATAGCTCTGTT TCGACAGTCTCCACCGGATTGGGTTCCATTACGATGCCCGTGCCTGTCGCACTTGTTCCCCGATACCAACTAACG ACCGCGGATGCTTTTGCTTGCTCCGTCCCGATCGGGGATTCGTATGCACCACTTGACCACTGGCAGTGGATGGCA TCTCTGTGGAGGGCGTGCGTAGGACCGGACATAACCGTGTACATCCGAGAATGCGAGAAGGACGAACTAGAGCGT CTTGGAGGCAGCCCCGTGGAAGTTCGTCTTCATGATGCACGAACCATTGTGGTTCGAAGACTGGCATCCTCACCA AGCGAACTGGAGGAAAAGTCACTTAAGAGAGTCGGCTTCGAGATTGAGGACTTTCTCACCCAATGA |