© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS100_1|g10247.t1 |
| Gene name | |
| Location | scaffold_110:30328..31531 |
| Strand | + |
| Gene length (bp) | 1203 |
| Transcript length (bp) | 957 |
| Coding sequence length (bp) | 957 |
| Protein length (aa) | 319 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF05637 | Glyco_transf_34 | galactosyl transferase GMA12/MNN10 family | 3.2E-64 | 65 | 295 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0016757 | glycosyltransferase activity | Yes |
| GO:0016740 | transferase activity | No |
| GO:0003824 | catalytic activity | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0005575 | cellular_component | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 57 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 30 | 52 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g10247.t1 MQFALPPRRTPITPPYARSSRISLQRRKQLKAVAILGFALLTVFFLLSQFFYTSTGAPAVPAGTSSIVVVTVLDR TAWSNEYIQKIVKNREDYAKRHGYTNFFANVSDYETVLDNAPKSWAVLPALRHAMASNPYSKYFFHLDAHALIMN PSKSLESHVLDKDRLESLMLKDVSVVPPDSIIKTFSHTQAQDVDLIMTTDAEDLSSGSFLLRQGDFAKYFLDFWF DPLYISYNFAKAETHVLDHIVQWHPTILARLALVPQRTINGYSKDSNGAGVDGVYKDGDFVIRFLGCDTDTKRSC EKEMEPYYRLWAGKMKNE* |
| Coding | >Ani_SJS100_1|g10247.t1 ATGCAGTTCGCTCTGCCTCCGCGGAGGACTCCGATAACCCCTCCGTACGCTCGCTCGTCGCGAATCTCACTCCAG CGCAGGAAACAGCTCAAAGCTGTGGCCATTCTGGGCTTCGCCCTGCTCACCGTCTTCTTCCTTCTTTCCCAGTTT TTCTACACAAGTACAGGGGCCCCGGCCGTACCAGCAGGAACATCCAGCATCGTCGTCGTCACCGTTCTAGACAGG ACGGCTTGGAGTAACGAGTACATCCAGAAGATCGTCAAGAACAGAGAGGACTATGCTAAGCGACATGGCTATACG AACTTCTTTGCCAACGTTTCCGACTATGAAACCGTCCTCGATAACGCCCCGAAGTCCTGGGCCGTCCTCCCAGCC CTCCGTCACGCGATGGCCTCCAACCCGTACTCGAAGTACTTTTTCCACCTAGATGCTCACGCCCTAATAATGAAC CCGAGCAAATCACTTGAATCGCACGTCCTCGACAAGGACCGTCTCGAATCCCTCATGCTCAAGGACGTCTCCGTC GTGCCTCCCGATAGCATCATCAAGACGTTTTCGCATACACAGGCTCAAGATGTCGATCTCATTATGACCACCGAT GCGGAGGATTTGAGCTCCGGTAGCTTCCTCCTTCGACAGGGTGATTTTGCCAAATACTTCCTCGACTTCTGGTTC GACCCTCTGTACATTAGCTATAACTTTGCAAAGGCCGAGACCCACGTTCTGGATCACATTGTGCAATGGCACCCA ACTATCTTGGCCAGATTGGCTCTGGTTCCACAGCGGACCATCAATGGGTACAGCAAGGATTCAAACGGGGCTGGC GTGGACGGCGTCTATAAGGACGGTGACTTCGTCATTCGGTTCCTTGGCTGTGACACCGACACGAAGCGGAGTTGC GAGAAGGAAATGGAGCCGTATTATCGGCTTTGGGCGGGAAAGATGAAGAATGAGTAA |
| Transcript | >Ani_SJS100_1|g10247.t1 ATGCAGTTCGCTCTGCCTCCGCGGAGGACTCCGATAACCCCTCCGTACGCTCGCTCGTCGCGAATCTCACTCCAG CGCAGGAAACAGCTCAAAGCTGTGGCCATTCTGGGCTTCGCCCTGCTCACCGTCTTCTTCCTTCTTTCCCAGTTT TTCTACACAAGTACAGGGGCCCCGGCCGTACCAGCAGGAACATCCAGCATCGTCGTCGTCACCGTTCTAGACAGG ACGGCTTGGAGTAACGAGTACATCCAGAAGATCGTCAAGAACAGAGAGGACTATGCTAAGCGACATGGCTATACG AACTTCTTTGCCAACGTTTCCGACTATGAAACCGTCCTCGATAACGCCCCGAAGTCCTGGGCCGTCCTCCCAGCC CTCCGTCACGCGATGGCCTCCAACCCGTACTCGAAGTACTTTTTCCACCTAGATGCTCACGCCCTAATAATGAAC CCGAGCAAATCACTTGAATCGCACGTCCTCGACAAGGACCGTCTCGAATCCCTCATGCTCAAGGACGTCTCCGTC GTGCCTCCCGATAGCATCATCAAGACGTTTTCGCATACACAGGCTCAAGATGTCGATCTCATTATGACCACCGAT GCGGAGGATTTGAGCTCCGGTAGCTTCCTCCTTCGACAGGGTGATTTTGCCAAATACTTCCTCGACTTCTGGTTC GACCCTCTGTACATTAGCTATAACTTTGCAAAGGCCGAGACCCACGTTCTGGATCACATTGTGCAATGGCACCCA ACTATCTTGGCCAGATTGGCTCTGGTTCCACAGCGGACCATCAATGGGTACAGCAAGGATTCAAACGGGGCTGGC GTGGACGGCGTCTATAAGGACGGTGACTTCGTCATTCGGTTCCTTGGCTGTGACACCGACACGAAGCGGAGTTGC GAGAAGGAAATGGAGCCGTATTATCGGCTTTGGGCGGGAAAGATGAAGAATGAGTAA |
| Gene | >Ani_SJS100_1|g10247.t1 ATGCAGTTCGCTCTGCCTCCGCGGAGGACTCCGATAACCCCTCCGTACGCTCGCTCGTCGCGAATCTCACTCCAG CGCAGGAAACAGCTCAAAGCTGTGGCCATTCTGGGCTTCGCCCTGCTCACCGTCTTCTTCCTTCTTTCCCAGTTT TTCTACACAAGTACAGGGGCCCCGGCCGTACCAGCAGGAACATCCAGCATCGTCGTCGTCACCGTTCTAGACAGG ACGGCTTGGAGTAACGAGTACATCCAGAAGATCGTCAAGAACAGAGAGGACTATGCTAAGCGACATGGTAAGGCG ACAGCAACCCAGTCACTTTCCTCGTGTCCAGTAACTCTTCTAATGTCTCACAATTGTGATTCAGGCTATACGAAC TTCTTTGCCAACGTTTCCGACTATGAAACCGTCCTCGATAACGCCCCGAAGTCCTGGGCCGTCCTCCCAGCCCTC CGTCACGCGATGGCCTCCAACCCGTACTCGAAGTACTTTTTCCACCTAGATGCTCACGCCCTAATAATGAACCCG AGCAAATCACTTGAATCGCACGTCCTCGACAAGGACCGTCTCGAATCCCTCATGCTCAAGGACGTCTCCGTCGTG CCTCCCGATAGCATCATCAAGACGTTTTCGCATACACAGGCTCAAGATGTCGATCTCATTATGACCACCGATGCG GAGGATTTGAGCTCCGGTAGCTTCCTCCTTCGACAGGGTGATTTTGCCAAATACTTCCTCGACTTCTGGTTCGAC CCTCTGTACATTAGCTATAACTTTGCAAAGGCCGAGACCCACGTTCTGGTAAGTGAGGAGACACATTACGCTTCT ATCTTTTTAGCTTTTCTATTTATACGCCGGACACCTCTAGTCGGATGTTCGCCTTATCAAATTCGGTTCTTTATT TTTTGCTTTTGCTTCATGATTTCCTGCGTCACCAGACTAAGTAACTAACCTACGTCATCAATTGCTGTCCAGGAT CACATTGTGCAATGGCACCCAACTATCTTGGCCAGATTGGCTCTGGTTCCACAGCGGACCATCAATGGGTACAGC AAGGATTCAAACGGGGCTGGCGTGGACGGCGTCTATAAGGACGGTGACTTCGTCATTCGGTTCCTTGGCTGTGAC ACCGACACGAAGCGGAGTTGCGAGAAGGAAATGGAGCCGTATTATCGGCTTTGGGCGGGAAAGATGAAGAATGAG TAA |