© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS100_1|g1020.t1 |
| Gene name | |
| Location | scaffold_003:611793..612952 |
| Strand | - |
| Gene length (bp) | 1159 |
| Transcript length (bp) | 1053 |
| Coding sequence length (bp) | 1053 |
| Protein length (aa) | 351 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF12829 | Mhr1 | Transcriptional regulation of mitochondrial recombination | 2.4E-28 | 70 | 153 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003697 | single-stranded DNA binding | Yes |
| GO:0006310 | DNA recombination | Yes |
| GO:0000002 | mitochondrial genome maintenance | Yes |
| GO:0000150 | DNA strand exchange activity | Yes |
| GO:0006259 | DNA metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0003677 | DNA binding | No |
| GO:0008152 | metabolic process | No |
| GO:0140640 | catalytic activity, acting on a nucleic acid | No |
| GO:0009987 | cellular process | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003674 | molecular_function | No |
| GO:0071840 | cellular component organization or biogenesis | No |
| GO:0044238 | primary metabolic process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0016043 | cellular component organization | No |
| GO:0140097 | catalytic activity, acting on DNA | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0003824 | catalytic activity | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0007005 | mitochondrion organization | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:0044260 | cellular macromolecule metabolic process | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0006996 | organelle organization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 53 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g1020.t1 MASQQVTKTPFQKILDPTKIGTWNIVRRPPVENHSIIQGKPREQNSNAFKTHQAKEGTRLRKALKALTHGKNIFA YHNIRTNQVVYSLTRYLENNTTLKQLLYHGKKTVPARLRKDMWVPYFSVHFNDSKIGLRAYHLLREFSMQRQLSP PKEMITITDAWIDQKRPRDPKGAEDFLEKYKDKIGRIMPKHHRKRAVMDQKATSVADIAAVLKIQEEEVQNGFAN GKRGYLTPTARKRRRAARAKEEQVAAEQAARVAGLEQALSSEVVEYKVQETADTTGALEDQGVKILWRDLHDARF AEAWPERVRHGELELSRDHVMPGQKGVRSEVLAEGEFRERTEQQQQGEKN* |
| Coding | >Ani_SJS100_1|g1020.t1 ATGGCCTCGCAACAGGTGACGAAGACGCCCTTCCAGAAGATCCTGGACCCGACCAAGATCGGGACGTGGAACATT GTGCGCCGCCCACCCGTCGAGAATCACAGCATCATCCAGGGCAAACCGCGCGAGCAGAACTCCAATGCGTTCAAG ACGCATCAGGCCAAGGAGGGAACTCGGTTACGAAAGGCCTTGAAGGCACTTACCCATGGCAAGAACATCTTTGCC TACCACAATATCCGCACGAATCAAGTCGTGTACTCTCTGACTCGGTATTTGGAGAACAACACAACTCTCAAACAA CTCCTCTACCACGGCAAAAAGACCGTTCCCGCCCGCCTCCGCAAAGACATGTGGGTCCCCTATTTCAGCGTGCAC TTCAACGACAGCAAGATCGGGCTACGAGCATACCACCTCCTCCGGGAATTCTCCATGCAGCGCCAACTCTCCCCG CCCAAAGAAATGATCACCATCACGGACGCCTGGATCGACCAGAAACGTCCCCGCGACCCGAAGGGCGCCGAAGAC TTCCTCGAGAAATACAAGGACAAGATCGGCCGGATCATGCCCAAGCACCACCGCAAGCGCGCCGTCATGGATCAA AAGGCCACCAGTGTGGCAGATATCGCGGCCGTGCTGAAGATCCAGGAAGAGGAGGTGCAGAATGGCTTTGCGAAT GGAAAGAGGGGCTATCTGACCCCTACCGCGCGGAAGAGGAGACGTGCTGCTAGGGCTAAGGAGGAGCAGGTTGCT GCGGAGCAGGCTGCGAGGGTGGCTGGATTGGAGCAGGCGCTGAGCAGTGAGGTCGTCGAGTATAAGGTCCAGGAG ACCGCGGATACCACTGGTGCGTTGGAGGATCAGGGAGTTAAGATCCTTTGGAGGGATCTGCATGATGCGCGGTTT GCGGAGGCTTGGCCTGAGCGTGTGAGACATGGTGAGTTGGAGTTGTCTCGCGATCATGTCATGCCCGGTCAGAAG GGTGTGAGATCCGAGGTGTTGGCCGAGGGTGAGTTCCGCGAGAGGACGGAGCAGCAGCAGCAGGGTGAGAAGAAC TAA |
| Transcript | >Ani_SJS100_1|g1020.t1 ATGGCCTCGCAACAGGTGACGAAGACGCCCTTCCAGAAGATCCTGGACCCGACCAAGATCGGGACGTGGAACATT GTGCGCCGCCCACCCGTCGAGAATCACAGCATCATCCAGGGCAAACCGCGCGAGCAGAACTCCAATGCGTTCAAG ACGCATCAGGCCAAGGAGGGAACTCGGTTACGAAAGGCCTTGAAGGCACTTACCCATGGCAAGAACATCTTTGCC TACCACAATATCCGCACGAATCAAGTCGTGTACTCTCTGACTCGGTATTTGGAGAACAACACAACTCTCAAACAA CTCCTCTACCACGGCAAAAAGACCGTTCCCGCCCGCCTCCGCAAAGACATGTGGGTCCCCTATTTCAGCGTGCAC TTCAACGACAGCAAGATCGGGCTACGAGCATACCACCTCCTCCGGGAATTCTCCATGCAGCGCCAACTCTCCCCG CCCAAAGAAATGATCACCATCACGGACGCCTGGATCGACCAGAAACGTCCCCGCGACCCGAAGGGCGCCGAAGAC TTCCTCGAGAAATACAAGGACAAGATCGGCCGGATCATGCCCAAGCACCACCGCAAGCGCGCCGTCATGGATCAA AAGGCCACCAGTGTGGCAGATATCGCGGCCGTGCTGAAGATCCAGGAAGAGGAGGTGCAGAATGGCTTTGCGAAT GGAAAGAGGGGCTATCTGACCCCTACCGCGCGGAAGAGGAGACGTGCTGCTAGGGCTAAGGAGGAGCAGGTTGCT GCGGAGCAGGCTGCGAGGGTGGCTGGATTGGAGCAGGCGCTGAGCAGTGAGGTCGTCGAGTATAAGGTCCAGGAG ACCGCGGATACCACTGGTGCGTTGGAGGATCAGGGAGTTAAGATCCTTTGGAGGGATCTGCATGATGCGCGGTTT GCGGAGGCTTGGCCTGAGCGTGTGAGACATGGTGAGTTGGAGTTGTCTCGCGATCATGTCATGCCCGGTCAGAAG GGTGTGAGATCCGAGGTGTTGGCCGAGGGTGAGTTCCGCGAGAGGACGGAGCAGCAGCAGCAGGGTGAGAAGAAC TAA |
| Gene | >Ani_SJS100_1|g1020.t1 ATGGCCTCGCAACAGGTGACGAAGACGCCCTTCCAGAAGATCCTGGACCCGACCAAGATCGGGACGTGGAACATT GTGCGCCGCCCACCCGTCGAGAATCACAGCATCATCCAGGGCAAACCGCGCGAGCAGAACTCCAATGCGTTCAAG ACGCATCAGGCCAAGGAGGGAACTCGGTTACGAAAGGCCTTGAAGGCACTTACCCATGGCAAGAACATCTTTGCC TACCACAATATCCGCACGAATCAAGTCGTGTACTCTCTGACTCGGTATTTGGAGGTGAGTCTCTCTTCCACTAGC TTACCAGGTCGAAGTGGACCCATCAATCTATCGATCCCATATCAAGCAGACGAAGAAAACACACCACTAACTCAA CATAAAACAGAACAACACAACTCTCAAACAACTCCTCTACCACGGCAAAAAGACCGTTCCCGCCCGCCTCCGCAA AGACATGTGGGTCCCCTATTTCAGCGTGCACTTCAACGACAGCAAGATCGGGCTACGAGCATACCACCTCCTCCG GGAATTCTCCATGCAGCGCCAACTCTCCCCGCCCAAAGAAATGATCACCATCACGGACGCCTGGATCGACCAGAA ACGTCCCCGCGACCCGAAGGGCGCCGAAGACTTCCTCGAGAAATACAAGGACAAGATCGGCCGGATCATGCCCAA GCACCACCGCAAGCGCGCCGTCATGGATCAAAAGGCCACCAGTGTGGCAGATATCGCGGCCGTGCTGAAGATCCA GGAAGAGGAGGTGCAGAATGGCTTTGCGAATGGAAAGAGGGGCTATCTGACCCCTACCGCGCGGAAGAGGAGACG TGCTGCTAGGGCTAAGGAGGAGCAGGTTGCTGCGGAGCAGGCTGCGAGGGTGGCTGGATTGGAGCAGGCGCTGAG CAGTGAGGTCGTCGAGTATAAGGTCCAGGAGACCGCGGATACCACTGGTGCGTTGGAGGATCAGGGAGTTAAGAT CCTTTGGAGGGATCTGCATGATGCGCGGTTTGCGGAGGCTTGGCCTGAGCGTGTGAGACATGGTGAGTTGGAGTT GTCTCGCGATCATGTCATGCCCGGTCAGAAGGGTGTGAGATCCGAGGTGTTGGCCGAGGGTGAGTTCCGCGAGAG GACGGAGCAGCAGCAGCAGGGTGAGAAGAACTAA |