© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS100_1|g10199.t1 |
| Gene name | |
| Location | scaffold_108:70271..71156 |
| Strand | - |
| Gene length (bp) | 885 |
| Transcript length (bp) | 885 |
| Coding sequence length (bp) | 885 |
| Protein length (aa) | 295 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF08501 | Shikimate_dh_N | Shikimate dehydrogenase substrate binding domain | 3.8E-21 | 12 | 90 |
| PF18317 | SDH_C | Shikimate 5'-dehydrogenase C-terminal domain | 2.5E-11 | 255 | 284 |
| PF01488 | Shikimate_DH | Shikimate / quinate 5-dehydrogenase | 3.9E-07 | 137 | 204 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0004764 | shikimate 3-dehydrogenase (NADP+) activity | Yes |
| GO:0003824 | catalytic activity | No |
| GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors | No |
| GO:0016491 | oxidoreductase activity | No |
| GO:0016616 | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g10199.t1 MTQPLNFHIFGGSNIRASLSPTIHNAAFTHHHLSHTYTTAECTSLSEMSHLITSPSFGGASITMPHKIAAFDHCT EVSDSARAIGAINTLVTTRSPQANSKVVVKGDNTDWSGLYTLIIDHLSKEGVHAAKPTGKVGLVIGAGGAARAGV YALLQAQFSTIIIWNRTVEKAEKIIQDFDTLKSEGIEMRAVGDVTGIGPVDVVIGTIPGDVKAEEDFEGLFQGSK MGLCVEMAYKPKVTPLMRVAERRGWVVKDGLEVLLRQGFEQYRLWTGLEAPELVMREAIEERDGVRSKV* |
| Coding | >Ani_SJS100_1|g10199.t1 ATGACTCAACCCCTCAACTTCCACATCTTCGGCGGCTCCAACATCCGCGCCTCCTTATCCCCCACCATCCACAAC GCCGCCTTCACCCACCACCATCTCTCGCACACCTACACCACCGCAGAATGCACCTCCTTATCAGAAATGTCCCAT CTCATCACCTCTCCCTCCTTCGGGGGTGCCAGCATCACAATGCCCCATAAAATCGCCGCTTTCGACCACTGCACT GAAGTGAGCGATTCAGCGCGCGCCATTGGGGCCATCAATACCCTCGTTACTACTCGATCCCCACAAGCAAACAGC AAGGTAGTAGTAAAAGGCGACAATACAGACTGGTCCGGCCTCTACACACTCATCATCGACCATTTATCTAAAGAA GGTGTACATGCCGCAAAACCAACCGGCAAAGTAGGCCTCGTCATCGGGGCAGGCGGTGCCGCGAGAGCCGGAGTG TATGCGCTCTTACAGGCTCAGTTCTCGACGATTATTATTTGGAATCGGACTGTCGAGAAGGCGGAGAAGATTATT CAGGATTTTGATACCCTCAAGAGTGAGGGAATCGAGATGAGGGCTGTGGGGGATGTTACGGGGATTGGACCTGTG GATGTGGTTATTGGGACTATTCCTGGGGATGTTAAGGCGGAGGAGGACTTTGAAGGGCTGTTTCAGGGATCGAAG ATGGGGTTGTGTGTGGAGATGGCGTATAAGCCGAAGGTTACACCCCTGATGAGGGTTGCGGAGAGGCGGGGTTGG GTGGTAAAGGATGGGTTGGAAGTGTTGTTGAGGCAGGGATTTGAGCAGTATCGCTTGTGGACGGGGTTGGAGGCT CCGGAGCTGGTGATGAGGGAGGCGATTGAGGAGAGGGATGGGGTGAGGTCTAAGGTTTGA |
| Transcript | >Ani_SJS100_1|g10199.t1 ATGACTCAACCCCTCAACTTCCACATCTTCGGCGGCTCCAACATCCGCGCCTCCTTATCCCCCACCATCCACAAC GCCGCCTTCACCCACCACCATCTCTCGCACACCTACACCACCGCAGAATGCACCTCCTTATCAGAAATGTCCCAT CTCATCACCTCTCCCTCCTTCGGGGGTGCCAGCATCACAATGCCCCATAAAATCGCCGCTTTCGACCACTGCACT GAAGTGAGCGATTCAGCGCGCGCCATTGGGGCCATCAATACCCTCGTTACTACTCGATCCCCACAAGCAAACAGC AAGGTAGTAGTAAAAGGCGACAATACAGACTGGTCCGGCCTCTACACACTCATCATCGACCATTTATCTAAAGAA GGTGTACATGCCGCAAAACCAACCGGCAAAGTAGGCCTCGTCATCGGGGCAGGCGGTGCCGCGAGAGCCGGAGTG TATGCGCTCTTACAGGCTCAGTTCTCGACGATTATTATTTGGAATCGGACTGTCGAGAAGGCGGAGAAGATTATT CAGGATTTTGATACCCTCAAGAGTGAGGGAATCGAGATGAGGGCTGTGGGGGATGTTACGGGGATTGGACCTGTG GATGTGGTTATTGGGACTATTCCTGGGGATGTTAAGGCGGAGGAGGACTTTGAAGGGCTGTTTCAGGGATCGAAG ATGGGGTTGTGTGTGGAGATGGCGTATAAGCCGAAGGTTACACCCCTGATGAGGGTTGCGGAGAGGCGGGGTTGG GTGGTAAAGGATGGGTTGGAAGTGTTGTTGAGGCAGGGATTTGAGCAGTATCGCTTGTGGACGGGGTTGGAGGCT CCGGAGCTGGTGATGAGGGAGGCGATTGAGGAGAGGGATGGGGTGAGGTCTAAGGTTTGA |
| Gene | >Ani_SJS100_1|g10199.t1 ATGACTCAACCCCTCAACTTCCACATCTTCGGCGGCTCCAACATCCGCGCCTCCTTATCCCCCACCATCCACAAC GCCGCCTTCACCCACCACCATCTCTCGCACACCTACACCACCGCAGAATGCACCTCCTTATCAGAAATGTCCCAT CTCATCACCTCTCCCTCCTTCGGGGGTGCCAGCATCACAATGCCCCATAAAATCGCCGCTTTCGACCACTGCACT GAAGTGAGCGATTCAGCGCGCGCCATTGGGGCCATCAATACCCTCGTTACTACTCGATCCCCACAAGCAAACAGC AAGGTAGTAGTAAAAGGCGACAATACAGACTGGTCCGGCCTCTACACACTCATCATCGACCATTTATCTAAAGAA GGTGTACATGCCGCAAAACCAACCGGCAAAGTAGGCCTCGTCATCGGGGCAGGCGGTGCCGCGAGAGCCGGAGTG TATGCGCTCTTACAGGCTCAGTTCTCGACGATTATTATTTGGAATCGGACTGTCGAGAAGGCGGAGAAGATTATT CAGGATTTTGATACCCTCAAGAGTGAGGGAATCGAGATGAGGGCTGTGGGGGATGTTACGGGGATTGGACCTGTG GATGTGGTTATTGGGACTATTCCTGGGGATGTTAAGGCGGAGGAGGACTTTGAAGGGCTGTTTCAGGGATCGAAG ATGGGGTTGTGTGTGGAGATGGCGTATAAGCCGAAGGTTACACCCCTGATGAGGGTTGCGGAGAGGCGGGGTTGG GTGGTAAAGGATGGGTTGGAAGTGTTGTTGAGGCAGGGATTTGAGCAGTATCGCTTGTGGACGGGGTTGGAGGCT CCGGAGCTGGTGATGAGGGAGGCGATTGAGGAGAGGGATGGGGTGAGGTCTAAGGTTTGA |