© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Ani_SJS100_1|g10144.t1 |
| Gene name | |
| Location | scaffold_107:15135..16398 |
| Strand | + |
| Gene length (bp) | 1263 |
| Transcript length (bp) | 1047 |
| Coding sequence length (bp) | 1047 |
| Protein length (aa) | 349 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02866 | Ldh_1_C | lactate/malate dehydrogenase, alpha/beta C-terminal domain | 1.2E-42 | 175 | 346 |
| PF00056 | Ldh_1_N | lactate/malate dehydrogenase, NAD binding domain | 6.5E-25 | 2 | 94 |
| PF00056 | Ldh_1_N | lactate/malate dehydrogenase, NAD binding domain | 5.6E-09 | 120 | 173 |
| PF01073 | 3Beta_HSD | 3-beta hydroxysteroid dehydrogenase/isomerase family | 6.9E-05 | 6 | 94 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006694 | steroid biosynthetic process | Yes |
| GO:0016616 | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | Yes |
| GO:0003854 | 3-beta-hydroxy-delta5-steroid dehydrogenase activity | Yes |
| GO:0016491 | oxidoreductase activity | Yes |
| GO:1901576 | organic substance biosynthetic process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0033764 | steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | No |
| GO:0044238 | primary metabolic process | No |
| GO:0008202 | steroid metabolic process | No |
| GO:0008610 | lipid biosynthetic process | No |
| GO:0003674 | molecular_function | No |
| GO:0008152 | metabolic process | No |
| GO:0006629 | lipid metabolic process | No |
| GO:0003824 | catalytic activity | No |
| GO:0009058 | biosynthetic process | No |
| GO:0016229 | steroid dehydrogenase activity | No |
| GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors | No |
| GO:0008150 | biological_process | No |
| GO:1901362 | organic cyclic compound biosynthetic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g10144.t1 MVKIALLGAAGQIGTPLSLLCKTSDLLDEIALYDIVHVPGIATDLMHIDTKAKVIGYLPQDDGLKKALTGADIIV VTAGIARKPGMTRDDLFKVRQQPHNKTKDPNAVPSLEQPSLTNTQTNAHIIRAIFTEVAATCPKAICCIVTNPVN STVPVAAETLKRAGVFDPTRLFGVTTLDVVRASTFAAHATNTDPKAYKVPVIGGHSGATILPLYSQAQPPVNLDE EALAAVIKKVQFGGDEIVKSKQGAGSATTCMAYAGFRFVKAILAAMAGETVTEEAYVYLPGIPGGDEIAARLGVD YFAVKVEIGKMGASKALPFGEISESERKLLGIAIEGLKKDIATGLALK* |
| Coding | >Ani_SJS100_1|g10144.t1 ATGGTGAAAATTGCACTTCTTGGCGCCGCGGGCCAGATAGGCACGCCCCTCAGCCTTTTATGCAAGACAAGTGAT TTACTTGATGAGATTGCTCTGTACGATATTGTTCATGTACCGGGCATCGCCACGGATTTAATGCACATCGACACC AAAGCCAAGGTTATCGGCTACCTTCCACAAGACGATGGACTAAAGAAAGCACTTACCGGAGCTGATATCATCGTT GTCACAGCTGGTATTGCCCGGAAGCCGGGTATGACTAGAGATGATCTGTTCAAGGTGAGACAACAACCACATAAC AAGACCAAAGATCCAAATGCTGTGCCCTCACTAGAACAACCCTCTCTAACAAACACTCAGACAAACGCCCACATT ATCCGCGCCATCTTCACCGAAGTCGCAGCAACATGCCCCAAGGCAATCTGCTGCATCGTCACCAACCCCGTCAAC TCCACCGTCCCCGTCGCAGCGGAGACTCTCAAAAGAGCAGGCGTGTTTGACCCTACGCGTCTCTTTGGCGTCACT ACCTTGGACGTCGTGCGGGCATCTACCTTCGCGGCACACGCCACGAACACCGACCCCAAGGCTTACAAAGTCCCC GTCATCGGTGGCCACAGCGGAGCTACCATACTTCCGCTTTACAGTCAGGCTCAACCACCGGTCAATCTTGATGAA GAGGCTTTGGCGGCTGTTATAAAAAAGGTGCAATTCGGTGGCGATGAGATCGTGAAAAGCAAGCAGGGCGCCGGA AGCGCTACGACGTGCATGGCGTATGCGGGATTTCGCTTTGTTAAGGCCATTCTGGCAGCTATGGCTGGGGAGACT GTTACTGAGGAGGCCTATGTCTATCTTCCGGGTATCCCGGGTGGGGATGAGATTGCGGCTAGGCTTGGGGTGGAC TACTTTGCTGTTAAGGTTGAGATTGGTAAGATGGGGGCTTCGAAGGCGTTGCCGTTTGGTGAGATATCGGAGAGC GAGAGGAAGCTTCTTGGGATTGCTATTGAGGGGCTGAAGAAGGATATTGCTACGGGTTTGGCTTTGAAGTAG |
| Transcript | >Ani_SJS100_1|g10144.t1 ATGGTGAAAATTGCACTTCTTGGCGCCGCGGGCCAGATAGGCACGCCCCTCAGCCTTTTATGCAAGACAAGTGAT TTACTTGATGAGATTGCTCTGTACGATATTGTTCATGTACCGGGCATCGCCACGGATTTAATGCACATCGACACC AAAGCCAAGGTTATCGGCTACCTTCCACAAGACGATGGACTAAAGAAAGCACTTACCGGAGCTGATATCATCGTT GTCACAGCTGGTATTGCCCGGAAGCCGGGTATGACTAGAGATGATCTGTTCAAGGTGAGACAACAACCACATAAC AAGACCAAAGATCCAAATGCTGTGCCCTCACTAGAACAACCCTCTCTAACAAACACTCAGACAAACGCCCACATT ATCCGCGCCATCTTCACCGAAGTCGCAGCAACATGCCCCAAGGCAATCTGCTGCATCGTCACCAACCCCGTCAAC TCCACCGTCCCCGTCGCAGCGGAGACTCTCAAAAGAGCAGGCGTGTTTGACCCTACGCGTCTCTTTGGCGTCACT ACCTTGGACGTCGTGCGGGCATCTACCTTCGCGGCACACGCCACGAACACCGACCCCAAGGCTTACAAAGTCCCC GTCATCGGTGGCCACAGCGGAGCTACCATACTTCCGCTTTACAGTCAGGCTCAACCACCGGTCAATCTTGATGAA GAGGCTTTGGCGGCTGTTATAAAAAAGGTGCAATTCGGTGGCGATGAGATCGTGAAAAGCAAGCAGGGCGCCGGA AGCGCTACGACGTGCATGGCGTATGCGGGATTTCGCTTTGTTAAGGCCATTCTGGCAGCTATGGCTGGGGAGACT GTTACTGAGGAGGCCTATGTCTATCTTCCGGGTATCCCGGGTGGGGATGAGATTGCGGCTAGGCTTGGGGTGGAC TACTTTGCTGTTAAGGTTGAGATTGGTAAGATGGGGGCTTCGAAGGCGTTGCCGTTTGGTGAGATATCGGAGAGC GAGAGGAAGCTTCTTGGGATTGCTATTGAGGGGCTGAAGAAGGATATTGCTACGGGTTTGGCTTTGAAGTAG |
| Gene | >Ani_SJS100_1|g10144.t1 ATGGTGAAAATTGCACTTCTTGGCGCCGCGGGCCAGATAGGCACGCCCCTCAGCCTTTTATGCAAGACAGTGAGT ATGACCAAATAATGGATAATAGAAGTAAGACTCAATGTGGGGAAACTGGCTGAATTTGCCTAGAGTGATTTACTT GATGAGATTGCTCTGTACGATATTGTTCATGTACCGGGCATCGCCACGGATTTAATGCACATCGACACCAAAGCC AAGGTTATCGGCTACCTTCCACAAGACGATGGACTAAAGAAAGCACTTACCGGAGCTGATATCATCGTTGTCACA GCTGGTATTGCCCGGAAGCCGGGTATGACTAGAGATGGTAAGTGACAACCCCTATCACTACGGCTACTACCTATA TATATTTCCAGCTCTTGACGGGTGTTCACATATAGATCTGTTCAAGGTGAGACAACAACCACATAACAAGACCAA AGATCCAAATGCTGTGCCCTCACTAGAACAACCCTCTCTAACAAACACTCAGACAAACGCCCACATTATCCGCGC CATCTTCACCGAAGTCGCAGCAACATGCCCCAAGGCAATCTGCTGCATCGTCACCAACCCCGTCAACTCCACCGT CCCCGTCGCAGCGGAGACTCTCAAAAGAGCAGGCGTGTTTGACCCTACGCGTCTCTTTGGCGTCACTACCTTGGA CGTCGTGCGGGCATCTACCTTCGCGGCACACGCCACGAACACCGACCCCAAGGCTTACAAAGTCCCCGTCATCGG TGGCCACAGCGGAGCTACCATACTTCCGCTTTACAGTCAGGCTCAACCACCGGTCAATCTTGATGAAGAGGCTTT GGCGGCTGTTATAAAAAGTATGTCACTACTTGGCGTTCTAGCTTCCGTGGGAGAGTGCGTGTATGCTGATTGTCA TGGAAATGAATAATAGAGGTGCAATTCGGTGGCGATGAGATCGTGAAAAGCAAGCAGGGCGCCGGAAGCGCTACG ACGTGCATGGCGTATGCGGGATTTCGCTTTGTTAAGGCCATTCTGGCAGCTATGGCTGGGGAGACTGTTACTGAG GAGGCCTATGTCTATCTTCCGGGTATCCCGGGTGGGGATGAGATTGCGGCTAGGCTTGGGGTGGACTACTTTGCT GTTAAGGTTGAGATTGGTAAGATGGGGGCTTCGAAGGCGTTGCCGTTTGGTGAGATATCGGAGAGCGAGAGGAAG CTTCTTGGGATTGCTATTGAGGGGCTGAAGAAGGATATTGCTACGGGTTTGGCTTTGAAGTAG |