Fungal Genomics

at Utrecht University

General Properties

Protein IDAni_SJS100_1|g10012.t1
Gene name
Locationscaffold_102:90136..90486
Strand+
Gene length (bp)350
Transcript length (bp)267
Coding sequence length (bp)267
Protein length (aa) 89

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF16211 Histone_H2A_C C-terminus of histone H2A 6.5E-12 51 83
PF00125 Histone Core histone H2A/H2B/H3/H4 9.5E-11 2 49

GO

GO Term Description Terminal node
GO:0003677 DNA binding Yes
GO:0003676 nucleic acid binding No
GO:0005488 binding No
GO:1901363 heterocyclic compound binding No
GO:0097159 organic cyclic compound binding No
GO:0003674 molecular_function No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 21 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Ani_SJS100_1|g10012.t1
MRVGAKAAVYVTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDTLIRATIAFGGVLPRINRALL
LKVEQKKKNKTEA*
Coding >Ani_SJS100_1|g10012.t1
ATGCGCGTTGGCGCCAAAGCCGCCGTGTATGTCACCGCTGTTCTCGAATATCTGACCGCAGAAGTTCTCGAATTG
GCCGGAAACGCTGCCAAGGATCTCAAAGTCAAGCGTATCACCCCGCGTCATCTGCAGCTCGCCATCCGTGGAGAT
GAGGAGCTGGATACCCTGATCCGCGCCACTATTGCCTTCGGAGGTGTTCTGCCGCGCATCAACCGCGCGCTCTTG
CTGAAGGTGGAGCAAAAGAAGAAGAACAAGACTGAGGCTTAA
Transcript >Ani_SJS100_1|g10012.t1
ATGCGCGTTGGCGCCAAAGCCGCCGTGTATGTCACCGCTGTTCTCGAATATCTGACCGCAGAAGTTCTCGAATTG
GCCGGAAACGCTGCCAAGGATCTCAAAGTCAAGCGTATCACCCCGCGTCATCTGCAGCTCGCCATCCGTGGAGAT
GAGGAGCTGGATACCCTGATCCGCGCCACTATTGCCTTCGGAGGTGTTCTGCCGCGCATCAACCGCGCGCTCTTG
CTGAAGGTGGAGCAAAAGAAGAAGAACAAGACTGAGGCTTAA
Gene >Ani_SJS100_1|g10012.t1
ATGCGCGTTGGCGCCAAAGGTACGACCCTTTCCATTAAGCCTACAGAAGGCGCACCTTCCTTTGTCTCCTCTTTC
AACCATGCTGACAAATCCCGATCGCAGCCGCCGTGTATGTCACCGCTGTTCTCGAATATCTGACCGCAGAAGTTC
TCGAATTGGCCGGAAACGCTGCCAAGGATCTCAAAGTCAAGCGTATCACCCCGCGTCATCTGCAGCTCGCCATCC
GTGGAGATGAGGAGCTGGATACCCTGATCCGCGCCACTATTGCCTTCGGAGGTGTTCTGCCGCGCATCAACCGCG
CGCTCTTGCTGAAGGTGGAGCAAAAGAAGAAGAACAAGACTGAGGCTTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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