© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Ani_SJS100_1|g10006.t1 |
| Gene name | |
| Location | scaffold_102:72105..73145 |
| Strand | - |
| Gene length (bp) | 1040 |
| Transcript length (bp) | 834 |
| Coding sequence length (bp) | 834 |
| Protein length (aa) | 278 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13869 | NUDIX_2 | Nucleotide hydrolase | 1.2E-82 | 27 | 220 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003729 | mRNA binding | Yes |
| GO:0005849 | mRNA cleavage factor complex | Yes |
| GO:0006378 | mRNA polyadenylation | Yes |
| GO:0044238 | primary metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0006396 | RNA processing | No |
| GO:0003674 | molecular_function | No |
| GO:0140513 | nuclear protein-containing complex | No |
| GO:0032991 | protein-containing complex | No |
| GO:0006397 | mRNA processing | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0016070 | RNA metabolic process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0016071 | mRNA metabolic process | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0031124 | mRNA 3'-end processing | No |
| GO:0008152 | metabolic process | No |
| GO:0031123 | RNA 3'-end processing | No |
| GO:0043631 | RNA polyadenylation | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0005575 | cellular_component | No |
| GO:0003723 | RNA binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:0003676 | nucleic acid binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 22 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Ani_SJS100_1|g10006.t1 MSTTTATAIQSSRPPIIPKDFSAQQPKTIRLYPLSNYTFGTKETQPEEDPSVLARLKRLEEHYDLHGMRRTCEGV LVCHEHNHPHVLMLQIANAFFKLPGDYLHFEDDEVEGFKKRLNERLAPVGSQFSGEGVNEDWEIGDTLAQWWRPN FETFMYPFLPGHVTRPKECKKLYFIQLPKKKVLSVPKNMKLLAVPLFELYDNTARYGPQLSAIPHLLSRYNFEFV DENDNVVAATPGTPLPDHQIPRTKVLAGDSGDGQDEGMTDYPSGEGENGASA* |
| Coding | >Ani_SJS100_1|g10006.t1 ATGTCGACCACCACCGCGACGGCGATCCAAAGCTCGCGCCCCCCCATCATCCCCAAAGACTTCTCCGCGCAACAA CCCAAAACAATCCGCCTGTACCCCCTCTCCAACTACACATTCGGCACCAAGGAAACGCAACCGGAGGAGGACCCG TCCGTTTTGGCGCGTCTAAAACGTCTCGAGGAGCACTACGACCTACATGGCATGAGACGCACCTGCGAGGGCGTC CTCGTCTGCCACGAACACAACCATCCTCATGTGCTGATGCTGCAGATTGCCAACGCGTTTTTCAAGCTCCCCGGT GACTACCTCCACTTCGAAGACGACGAAGTCGAAGGCTTCAAGAAACGCCTCAATGAACGTCTCGCCCCCGTCGGC TCCCAGTTCTCGGGCGAAGGCGTTAACGAAGACTGGGAGATTGGTGACACGTTGGCGCAATGGTGGAGGCCGAAC TTTGAGACGTTCATGTACCCTTTCCTCCCGGGACATGTGACTCGGCCGAAGGAGTGCAAGAAGTTGTATTTCATC CAATTGCCGAAGAAGAAGGTCCTCTCGGTCCCGAAGAACATGAAACTCCTCGCCGTCCCACTCTTCGAACTATAC GACAACACGGCCCGGTATGGCCCTCAGCTCTCGGCTATCCCGCACTTGCTGTCGAGATACAATTTTGAGTTTGTC GATGAGAACGACAACGTGGTTGCCGCGACGCCGGGCACGCCCTTGCCGGATCATCAGATCCCCCGGACGAAGGTG CTGGCTGGTGATAGCGGTGATGGACAGGATGAGGGGATGACGGATTACCCTTCTGGAGAGGGCGAAAACGGGGCT AGTGCGTAG |
| Transcript | >Ani_SJS100_1|g10006.t1 ATGTCGACCACCACCGCGACGGCGATCCAAAGCTCGCGCCCCCCCATCATCCCCAAAGACTTCTCCGCGCAACAA CCCAAAACAATCCGCCTGTACCCCCTCTCCAACTACACATTCGGCACCAAGGAAACGCAACCGGAGGAGGACCCG TCCGTTTTGGCGCGTCTAAAACGTCTCGAGGAGCACTACGACCTACATGGCATGAGACGCACCTGCGAGGGCGTC CTCGTCTGCCACGAACACAACCATCCTCATGTGCTGATGCTGCAGATTGCCAACGCGTTTTTCAAGCTCCCCGGT GACTACCTCCACTTCGAAGACGACGAAGTCGAAGGCTTCAAGAAACGCCTCAATGAACGTCTCGCCCCCGTCGGC TCCCAGTTCTCGGGCGAAGGCGTTAACGAAGACTGGGAGATTGGTGACACGTTGGCGCAATGGTGGAGGCCGAAC TTTGAGACGTTCATGTACCCTTTCCTCCCGGGACATGTGACTCGGCCGAAGGAGTGCAAGAAGTTGTATTTCATC CAATTGCCGAAGAAGAAGGTCCTCTCGGTCCCGAAGAACATGAAACTCCTCGCCGTCCCACTCTTCGAACTATAC GACAACACGGCCCGGTATGGCCCTCAGCTCTCGGCTATCCCGCACTTGCTGTCGAGATACAATTTTGAGTTTGTC GATGAGAACGACAACGTGGTTGCCGCGACGCCGGGCACGCCCTTGCCGGATCATCAGATCCCCCGGACGAAGGTG CTGGCTGGTGATAGCGGTGATGGACAGGATGAGGGGATGACGGATTACCCTTCTGGAGAGGGCGAAAACGGGGCT AGTGCGTAG |
| Gene | >Ani_SJS100_1|g10006.t1 ATGTCGACCACCACCGCGACGGCGATCCAAAGCTCGCGCCCGTACGTCCTGACATCGACCTACCTCACTACCGCT TCCTTCTCCACGCAATCACCACTGACCATGTCATGAATAATAGCCCCATCATCCCCAAAGACTTCTCCGCGCAAC AACCCAAAACAATCCGCCTGTACCCCCTCTCCAACTACACATTCGGCACCAAGGAAACGCAACCGGAGGAGGACC CGTCCGTTTTGGCGCGTCTAAAACGTCTCGAGGAGCACTACGACCTACATGGCATGAGACGCACCTGCGAGGGCG TCCTCGTCTGCCACGAACACAACCATCCTCATGTGCTGATGCTGCAGATTGCCAACGCGTTTTTCAAGCTGTACG TTTGTATACCCTCTGCAATCTGGAGCTTCTACTTACCCTGGTGGATACAGCCCCGGTGACTACCTCCACTTCGAA GACGACGAAGTCGAAGGCTTCAAGAAACGCCTCAATGAACGTCTCGCCCCCGTCGGCTCCCAGTTCTCGGGCGAA GGCGTTAACGAAGACTGGGAGATTGGTGACACGTTGGCGCAATGGTGGAGGCCGAACTTTGAGACGTTCATGTAC CCTTTCCTCCCGGGACATGTGACTCGGCCGAAGGAGTGCAAGAAGTTGTATTTCATCCAATTGCCGAAGAAGAGT AAGCCTTCCTTCATATATCATGCACAGTCAGGCCATCAGGGAGGAATGGTATGATTAATTTGTGTTGTGCAGAGG TCCTCTCGGTCCCGAAGAACATGAAACTCCTCGCCGTCCCACTCTTCGAACTATACGACAACACGGCCCGGTATG GCCCTCAGCTCTCGGCTATCCCGCACTTGCTGTCGAGATACAATTTTGAGTTTGTCGATGAGAACGACAACGTGG TTGCCGCGACGCCGGGCACGCCCTTGCCGGATCATCAGATCCCCCGGACGAAGGTGCTGGCTGGTGATAGCGGTG ATGGACAGGATGAGGGGATGACGGATTACCCTTCTGGAGAGGGCGAAAACGGGGCTAGTGCGTAG |