Fungal Genomics

at Utrecht University

PFAM Domain

General information

PFAM domainPF00076
Short nameRRM_1
Long nameRNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Proteins with at least one of this domain63
Total domain count95
More informationPFAM website

Proteins with this PFAM domain

Note: all PFAM domains are shown for these proteins
Short name Long name E-value Start End Name
protein ID PFAM
Ani_SJS100_1|g10013.t1 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.6E-05 159 229
PF01424 R3H R3H domain 3.3E-11 305 363
PF12901 SUZ-C SUZ-C motif 2.1E-07 551 584
Ani_SJS100_1|g1003.t1 PF12220 U1snRNP70_N U1 small nuclear ribonucleoprotein of 70kDa MW N terminal 2.9E-26 3 93
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.8E-16 104 178
Ani_SJS100_1|g10373.t1 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9.0E-12 586 655
Ani_SJS100_1|g10429.t1 PF03467 Smg4_UPF3 Smg-4/UPF3 family 2.4E-45 39 206
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.6E-06 423 468
Ani_SJS100_1|g10609.t1 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.7E-16 15 85
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.5E-17 103 172
Ani_SJS100_1|g10775.t1 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.1E-06 318 383
PF04146 YTH YT521-B-like domain 8.1E-65 437 641
Ani_SJS100_1|g10839.t1 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.0E-09 436 499
Ani_SJS100_1|g1304.t1 PF00929 RNase_T Exonuclease 2.6E-06 20 143
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.8E-07 256 323
PF00641 zf-RanBP Zn-finger in Ran binding protein and others 8.4E-11 351 378
PF00641 zf-RanBP Zn-finger in Ran binding protein and others 4.4E-09 424 454
Ani_SJS100_1|g1461.t1 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.9E-17 11 84
Ani_SJS100_1|g1612.t1 PF13893 RRM_5 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.8E-04 84 174
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9.6E-18 93 165
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.6E-20 186 256
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7.8E-15 313 376
Ani_SJS100_1|g1705.t1 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9.2E-06 122 193
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.4E-06 286 340
Ani_SJS100_1|g2024.t1 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.2E-12 16 85
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4.5E-11 178 235
Ani_SJS100_1|g2400.t1 PF00004 AAA ATPase family associated with various cellular activities (AAA) 2.8E-18 59 182
PF00004 AAA ATPase family associated with various cellular activities (AAA) 1.3E-41 340 468
PF17862 AAA_lid_3 AAA+ lid domain 4.0E-09 492 539
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.1E-13 576 642
Ani_SJS100_1|g2533.t1 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7.9E-09 245 309
Ani_SJS100_1|g2832.t1 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.1E-13 182 247
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.6E-20 281 350
PF15519 RBM39linker linker between RRM2 and RRM3 domains in RBM39 protein 5.6E-27 415 491
Ani_SJS100_1|g293.t1 PF10433 MMS1_N Mono-functional DNA-alkylating methyl methanesulfonate N-term 8.2E-133 74 575
PF03178 CPSF_A CPSF A subunit region 1.1E-79 784 1107
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.7E-09 1372 1429
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9.6E-09 1460 1522
Ani_SJS100_1|g3045.t1 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4.3E-06 78 115
PF08662 eIF2A Eukaryotic translation initiation factor eIF2A 1.6E-36 401 623
Ani_SJS100_1|g3182.t1 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3.7E-15 49 118
Ani_SJS100_1|g3252.t1 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.2E-19 9 79
PF14327 CSTF2_hinge Hinge domain of cleavage stimulation factor subunit 2 8.2E-33 120 199
PF14304 CSTF_C Transcription termination and cleavage factor C-terminal 1.7E-18 253 292
Ani_SJS100_1|g3439.t1 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3.7E-10 837 903
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3.3E-11 913 977
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4.9E-13 1005 1072
PF16842 RRM_occluded Occluded RNA-recognition motif 9.2E-31 1119 1197
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.7E-04 1126 1186
Ani_SJS100_1|g3452.t1 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3.8E-20 35 105
Ani_SJS100_1|g3690.t1 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9.7E-23 4 74
Ani_SJS100_1|g3719.t1 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.6E-18 305 374
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.5E-18 414 483
Ani_SJS100_1|g3757.t1 PF00641 zf-RanBP Zn-finger in Ran binding protein and others 9.6E-10 236 266
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.1E-04 352 392
PF01585 G-patch G-patch domain 9.7E-10 640 681
Ani_SJS100_1|g38.t1 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.9E-14 109 177
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8.2E-18 223 294
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3.2E-16 383 451
Ani_SJS100_1|g4032.t1 PF00160 Pro_isomerase Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 1.4E-33 3 169
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.7E-15 250 320
Ani_SJS100_1|g4038.t1 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.8E-08 126 191
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3.0E-14 220 290
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6.0E-16 347 410
Ani_SJS100_1|g4471.t1 PF01585 G-patch G-patch domain 1.4E-09 356 394
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4.3E-05 467 514
Ani_SJS100_1|g455.t1 PF04818 CID CID domain 5.5E-11 24 143
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4.4E-05 510 570
Ani_SJS100_1|g463.t1 PF02136 NTF2 Nuclear transport factor 2 (NTF2) domain 1.5E-26 61 176
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9.4E-08 408 465
Ani_SJS100_1|g4850.t1 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.4E-13 408 470
Ani_SJS100_1|g4855.t1 PF00307 CH Calponin homology (CH) domain 8.7E-20 11 115
PF00307 CH Calponin homology (CH) domain 1.5E-22 126 230
PF11971 CAMSAP_CH CAMSAP CH domain 1.1E-06 135 206
PF08726 EFhand_Ca_insen Ca2+ insensitive EF hand 8.6E-14 559 595
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4.0E-16 705 774
PF13865 FoP_duplication C-terminal duplication domain of Friend of PRMT1 1.5E-05 863 911
Ani_SJS100_1|g4946.t1 PF13893 RRM_5 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5.2E-03 34 132
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.7E-17 56 125
PF13893 RRM_5 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9.5E-02 142 223
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.1E-17 144 211
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.7E-21 237 305
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.8E-08 340 374
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6.5E-07 430 465
PF00658 PABP Poly-adenylate binding protein, unique domain 6.1E-30 668 730
Ani_SJS100_1|g5039.t1 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.4E-06 203 261
PF10443 RNA12 RNA12 protein 1.1E-174 368 789
Ani_SJS100_1|g5379.t1 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.9E-13 366 436
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3.5E-07 496 556
Ani_SJS100_1|g5384.t1 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.8E-20 69 138
Ani_SJS100_1|g6103.t1 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.0E-15 69 138
Ani_SJS100_1|g6244.t1 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9.5E-10 482 540
PF00806 PUF Pumilio-family RNA binding repeat 4.6E-05 685 714
PF00806 PUF Pumilio-family RNA binding repeat 5.1E-03 720 754
PF00806 PUF Pumilio-family RNA binding repeat 2.1E-02 763 778
PF05063 MT-A70 MT-A70 8.0E-20 1472 1661
Ani_SJS100_1|g6252.t1 PF10378 RRM Putative RRM domain 3.3E-05 139 168
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.4E-11 351 405
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6.2E-11 576 633
Ani_SJS100_1|g6270.t1 PF13893 RRM_5 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.6E-06 9 80
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7.3E-19 13 79
Ani_SJS100_1|g6299.t1 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.1E-15 2 54
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6.0E-16 85 142
Ani_SJS100_1|g6836.t1 PF01480 PWI PWI domain 2.9E-11 10 74
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8.1E-06 347 391
Ani_SJS100_1|g6902.t1 PF01494 FAD_binding_3 FAD binding domain 1.9E-14 6 357
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.7E-11 632 702
Ani_SJS100_1|g6954.t1 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6.4E-08 6 69
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.9E-17 303 372
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5.4E-10 486 546
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6.6E-15 599 673
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7.5E-15 704 772
PF13893 RRM_5 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5.4E-02 714 784
Ani_SJS100_1|g7037.t1 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6.1E-18 40 110
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.6E-13 153 221
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3.0E-14 311 372
Ani_SJS100_1|g7047.t1 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7.1E-13 221 289
Ani_SJS100_1|g7204.t1 PF05383 La La domain 2.2E-21 108 164
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6.5E-08 219 267
Ani_SJS100_1|g7286.t1 PF14605 Nup35_RRM_2 Nup53/35/40-type RNA recognition motif 1.1E-07 6 63
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.4E-08 9 74
Ani_SJS100_1|g7297.t1 PF12353 eIF3g Eukaryotic translation initiation factor 3 subunit G 3.0E-44 25 152
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.6E-14 265 320
Ani_SJS100_1|g7429.t1 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5.8E-06 75 151
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9.7E-13 187 244
Ani_SJS100_1|g7722.t1 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4.3E-12 273 344
Ani_SJS100_1|g7847.t1 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6.1E-06 358 399
Ani_SJS100_1|g8071.t1 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6.2E-13 173 238
Ani_SJS100_1|g8282.t1 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7.1E-16 49 117
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5.6E-11 240 321
Ani_SJS100_1|g8735.t1 PF16131 Torus Torus domain 1.4E-44 60 167
PF00642 zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar) 1.5E-04 131 149
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9.6E-08 202 254
Ani_SJS100_1|g8875.t1 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7.9E-08 113 168
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3.3E-07 246 293
PF02152 FolB Dihydroneopterin aldolase 2.4E-22 667 772
Ani_SJS100_1|g9123.t1 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.3E-11 8 73
Ani_SJS100_1|g9407.t1 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6.6E-18 257 326
Ani_SJS100_1|g9625.t1 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7.6E-15 48 114
Ani_SJS100_1|g9662.t1 PF00172 Zn_clus Fungal Zn(2)-Cys(6) binuclear cluster domain 7.8E-07 34 68
PF04082 Fungal_trans Fungal specific transcription factor domain 3.3E-15 243 459
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.1E-18 1042 1110
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3.3E-14 1132 1202
Ani_SJS100_1|g978.t1 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3.4E-08 104 161
PF13865 FoP_duplication C-terminal duplication domain of Friend of PRMT1 1.4E-06 189 240
Ani_SJS100_1|g9901.t1 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.2E-08 27 97
Ani_SJS100_1|g9968.t1 PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.1E-15 84 150

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