© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Sequences in assembly | 1357 |
|---|---|
| Total assembly length (Mbp) | 31.95 |
| Assembly GC content (%) | 51.11 |
| Assembly gaps (%) | 0.0 |
| L50 number (#) | 200 |
| N50 length (bp) | 49324 |
| Genes | 8930 |
| Gene length (median) | 1452 |
| Transcript length (median) | 1302 |
| Exon length (median) | 323 |
| CDS length (median) | 1299 |
| Protein length (median) | 433 |
| Spliced genes (total, %) | 6450 (72.23%) |
| Exons per gene (median) | 2 |
| Intron length (median) | 67 |
| Introns per spliced gene (median) | 2 |
| Gene density (genes / Mbp) | 279.49 |
| Coding content of assembly (bp, %) | 13987488 (43.78%) |
| Proteins with internal stops (total, %) | 0 (0.0%) |
| Unique PFAM domains | 3818 |
| Genes with PFAM (total, %) | 6450 (72.23%) |
| Genes with GO (total, %) | 4083 (45.72%) |
| Genes with signalP (total, %) | 766 (8.58%) |
| Genes with TMHMM (total, %) | 1714 (19.19%) |
| Genes annotated as TF (total, %) | 294 (3.29%) |
| Genes annotated as MEROPS protease (total, %) | 336 (3.76%) |
| Genes annotated as CAZyme (total, %) | 281 (3.15%) |
| Secondary metabolism gene cluster | 53 |
| CEGMA completeness (%) | 97.16 |
| BUSCO2 completeness (fungi_odb9) | Complete: 93.1% (Single-copy: 92.07%, Duplicated: 1.03%), Fragmented: 2.41%, Missing: 4.48% |